mRNA_H-paniculata_contig29589.8042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29589.8042.1
Unique NamemRNA_H-paniculata_contig29589.8042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 58.5 bits (140), Expect = 7.090e-8
Identity = 36/100 (36.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   22 GECSLPV-ALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHK 318
            G  S P+ AL   ++T+ + + W +DSGA+NH+TNDLS +  +++P  G + V + NGS L +  +G  +LIS+S T      ++ ++P+++ NL S+ K
Sbjct:   43 GSSSSPMEALLATSETVTD-DAWFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 54.7 bits (130), Expect = 2.840e-6
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   73 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 348
            N N WV DSGA++H+T DLS +  L +P  G + V + +G+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:  111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 199          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A833X6V8_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833X6V8_JUGRE)

HSP 1 Score: 54.7 bits (130), Expect = 3.020e-6
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   25 ECSLPVALTNQNQTINNGNM-WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL 345
            +  L  AL N   TI+N    W +D+GAS HMT+D+S++ D  +P  G D V++GNGS L +  +G     S S T      +V  +P L  NL S+ K+   +P S+
Sbjct:  189 DAHLAEALANF--TISNDTADWYTDTGASAHMTSDVSQL-DKVEPYTGTDRVIVGNGSSLPITHMG-----SCSPTPSLTLNDVLVVPNLTKNLLSVSKLTNDFPFSV 288          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 54.7 bits (130), Expect = 3.130e-6
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   73 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 348
            N N WV DSGA++H+T DLS +  L +P  G + V + +G+ L +   G   L    T   P TL +V Y+P+L  NL S++++     +S++
Sbjct:  329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 417          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY)

HSP 1 Score: 54.3 bits (129), Expect = 4.290e-6
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   49 TNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
            +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +GNG  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  355 SNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY)

HSP 1 Score: 54.3 bits (129), Expect = 4.290e-6
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   49 TNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
            +N N T   G  W++DSGAS+H+T DL+ +     P  G + V +GNG  L +  +G   L  H+   +     V ++P +  NL S+HK+
Sbjct:  355 SNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-5
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1
Query:   28 CSLPVALTN-------QNQTI-NNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL---EVSYLPELNFNLFSLHKIQGKYPISL 345
            C+   A TN       Q QTI NN N W+ D+GAS H+T D+S +       AG+D V + NGS + +   G+  L      D P  L   ++ ++P L  NL S+ K+    PIS+
Sbjct:  300 CNFKYAPTNTRSPQALQAQTIPNNSNEWILDTGASAHLTPDISNVQ-YPHSYAGQDSVSIANGSTVPIQNSGQGIL---PLPDTPRKLYLRKILHVPSLAQNLLSVSKLTADNPISI 412          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A8J5F994_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F994_ZINOF)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-5
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   82 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
            +WV DSGA++HM+N L+ +YD   P +   +V + NG    V   GK+ L+S +        EV Y+P   F L S+HK+
Sbjct:  378 VWVIDSGATDHMSNKLTHVYDFH-PFSKPSLVSVANGKGAHVQGKGKIKLVSDTIES-----EVLYVPSFPFQLLSVHKL 451          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-5
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   79 NMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLD 348
            N WV+DSGA++H+TN  S++   + P +GED V++GN   L +  +G   L S+   ++P   +V   P +  +L S+ K+   YP  ++
Sbjct:  291 NPWVTDSGATSHITNSTSQLQSAQ-PYSGEDSVIVGNSDFLPITHIGSAVLTSNQG-NLPLR-DVLVCPNITKSLLSVSKLTSDYPCVIE 377          
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-5
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   31 SLPVALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLE-VSYLPELNFNLFSLHKI 321
            S P A      + N+   W+ D+GASNH+TNDLS +  L  P  G D +++GNGS L +  +G   ++    ++VP  L+ V  +P ++ N+ S+ ++
Sbjct:  618 SKPQAHMAATTSANSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTIL---ISNVPVHLQHVLCVPLISRNIISISRL 711          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A834W4R7_9FABA7.090e-836.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JUM8_9BRAS2.840e-635.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A833X6V8_JUGRE3.020e-637.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2KMT9_9BRAS3.130e-635.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HVC4_FAGSY4.290e-634.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F8M1_FAGSY4.290e-634.07Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2I0VGA3_9ASPA1.070e-535.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5F994_ZINOF1.460e-537.50Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
Q9SV56_ARATH1.480e-533.33Uncharacterized protein AT4g28900 n=1 Tax=Arabidop... [more]
A0A5N6NBX7_9ASTR1.490e-533.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29589contigH-paniculata_contig29589:2656..3003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929903.064486-CDS-H-paniculata_contig29589:2655..30031622929903.064486-CDS-H-paniculata_contig29589:2655..3003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29589 2656..3003 +
1691481062.3946824-CDS-H-paniculata_contig29589:2655..30031691481062.3946824-CDS-H-paniculata_contig29589:2655..3003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29589 2656..3003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29589.8042.1prot_H-paniculata_contig29589.8042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29589 2656..3003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29589.8042.1

>prot_H-paniculata_contig29589.8042.1 ID=prot_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
KLDDTEDGECSLPVALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLR
KPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFN
LFSLHKIQGKYPISLD
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mRNA from alignment at H-paniculata_contig29589:2656..3003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29589.8042.1 ID=mRNA_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig29589:2656..3003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTTGGATGATACAGAGGATGGAGAGTGCAGTTTGCCTGTAGCTTTGAC GAATCAAAATCAAACTATTAACAATGGCAATATGTGGGTGTCTGATTCCG GTGCAAGTAACCACATGACGAACGATCTTTCGAAAATGTATGACCTTCGT AAGCCTGTGGCAGGGGAAGATGTGGTAATGTTGGGGAATGGATCGATTCT GGTTGTAGATTTGGTGGGAAAGTTGGATTTGATTTCTCACTCCACTACCG ACGTGCCTGCCACACTTGAAGTATCATACTTACCAGAGTTGAACTTCAAC CTTTTTTCCCTCCACAAAATCCAAGGGAAGTATCCAATATCTTTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29589:2656..3003+

>mRNA_H-paniculata_contig29589.8042.1 ID=mRNA_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig29589:2656..3003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTTGGATGATACAGAGGATGGAGAGTGCAGTTTGCCTGTAGCTTTGAC
GAATCAAAATCAAACTATTAACAATGGCAATATGTGGGTGTCTGATTCCG
GTGCAAGTAACCACATGACGAACGATCTTTCGAAAATGTATGACCTTCGT
AAGCCTGTGGCAGGGGAAGATGTGGTAATGTTGGGGAATGGATCGATTCT
GGTTGTAGATTTGGTGGGAAAGTTGGATTTGATTTCTCACTCCACTACCG
ACGTGCCTGCCACACTTGAAGTATCATACTTACCAGAGTTGAACTTCAAC
CTTTTTTCCCTCCACAAAATCCAAGGGAAGTATCCAATATCTTTGGATAA
GTTGGATGATACAGAGGATGGAGAGTGCAGTTTGCCTGTAGCTTTGACGA
ATCAAAATCAAACTATTAACAATGGCAATATGTGGGTGTCTGATTCCGGT
GCAAGTAACCACATGACGAACGATCTTTCGAAAATGTATGACCTTCGTAA
GCCTGTGGCAGGGGAAGATGTGGTAATGTTGGGGAATGGATCGATTCTGG
TTGTAGATTTGGTGGGAAAGTTGGATTTGATTTCTCACTCCACTACCGAC
GTGCCTGCCACACTTGAAGTATCATACTTACCAGAGTTGAACTTCAACCT
TTTTTCCCTCCACAAAATCCAAGGGAAGTATCCAATATCTTTGGAT
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