mRNA_H-paniculata_contig29589.8042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 58.5 bits (140), Expect = 7.090e-8 Identity = 36/100 (36.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 22 GECSLPV-ALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHK 318
G S P+ AL ++T+ + + W +DSGA+NH+TNDLS + +++P G + V + NGS L + +G +LIS+S T ++ ++P+++ NL S+ K
Sbjct: 43 GSSSSPMEALLATSETVTD-DAWFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS) HSP 1 Score: 54.7 bits (130), Expect = 2.840e-6 Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 73 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 348
N N WV DSGA++H+T DLS + L +P G + V + +G+ L + G L T P TL +V Y+P+L NL S++++ +S++
Sbjct: 111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 199
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A833X6V8_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833X6V8_JUGRE) HSP 1 Score: 54.7 bits (130), Expect = 3.020e-6 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 25 ECSLPVALTNQNQTINNGNM-WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISL 345
+ L AL N TI+N W +D+GAS HMT+D+S++ D +P G D V++GNGS L + +G S S T +V +P L NL S+ K+ +P S+
Sbjct: 189 DAHLAEALANF--TISNDTADWYTDTGASAHMTSDVSQL-DKVEPYTGTDRVIVGNGSSLPITHMG-----SCSPTPSLTLNDVLVVPNLTKNLLSVSKLTNDFPFSV 288
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS) HSP 1 Score: 54.7 bits (130), Expect = 3.130e-6 Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 73 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL-EVSYLPELNFNLFSLHKIQGKYPISLD 348
N N WV DSGA++H+T DLS + L +P G + V + +G+ L + G L T P TL +V Y+P+L NL S++++ +S++
Sbjct: 329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRLCNANRVSVE 417
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY) HSP 1 Score: 54.3 bits (129), Expect = 4.290e-6 Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 49 TNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
+N N T G W++DSGAS+H+T DL+ + P G + V +GNG L + +G L H+ + V ++P + NL S+HK+
Sbjct: 355 SNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY) HSP 1 Score: 54.3 bits (129), Expect = 4.290e-6 Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 49 TNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
+N N T G W++DSGAS+H+T DL+ + P G + V +GNG L + +G L H+ + V ++P + NL S+HK+
Sbjct: 355 SNLNMTQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA) HSP 1 Score: 53.1 bits (126), Expect = 1.070e-5 Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1
Query: 28 CSLPVALTN-------QNQTI-NNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATL---EVSYLPELNFNLFSLHKIQGKYPISL 345
C+ A TN Q QTI NN N W+ D+GAS H+T D+S + AG+D V + NGS + + G+ L D P L ++ ++P L NL S+ K+ PIS+
Sbjct: 300 CNFKYAPTNTRSPQALQAQTIPNNSNEWILDTGASAHLTPDISNVQ-YPHSYAGQDSVSIANGSTVPIQNSGQGIL---PLPDTPRKLYLRKILHVPSLAQNLLSVSKLTADNPISI 412
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A8J5F994_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F994_ZINOF) HSP 1 Score: 52.8 bits (125), Expect = 1.460e-5 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 82 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKI 321
+WV DSGA++HM+N L+ +YD P + +V + NG V GK+ L+S + EV Y+P F L S+HK+
Sbjct: 378 VWVIDSGATDHMSNKLTHVYDFH-PFSKPSLVSVANGKGAHVQGKGKIKLVSDTIES-----EVLYVPSFPFQLLSVHKL 451
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH) HSP 1 Score: 52.8 bits (125), Expect = 1.480e-5 Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 79 NMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYPISLD 348
N WV+DSGA++H+TN S++ + P +GED V++GN L + +G L S+ ++P +V P + +L S+ K+ YP ++
Sbjct: 291 NPWVTDSGATSHITNSTSQLQSAQ-PYSGEDSVIVGNSDFLPITHIGSAVLTSNQG-NLPLR-DVLVCPNITKSLLSVSKLTSDYPCVIE 377
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR) HSP 1 Score: 52.8 bits (125), Expect = 1.490e-5 Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 31 SLPVALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSILVVDLVGKLDLISHSTTDVPATLE-VSYLPELNFNLFSLHKI 321
S P A + N+ W+ D+GASNH+TNDLS + L P G D +++GNGS L + +G ++ ++VP L+ V +P ++ N+ S+ ++
Sbjct: 618 SKPQAHMAATTSANSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTIL---ISNVPVHLQHVLCVPLISRNIISISRL 711 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29589.8042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29589.8042.1 >prot_H-paniculata_contig29589.8042.1 ID=prot_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp KLDDTEDGECSLPVALTNQNQTINNGNMWVSDSGASNHMTNDLSKMYDLRback to top mRNA from alignment at H-paniculata_contig29589:2656..3003+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29589.8042.1 ID=mRNA_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig29589:2656..3003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29589:2656..3003+ >mRNA_H-paniculata_contig29589.8042.1 ID=mRNA_H-paniculata_contig29589.8042.1|Name=mRNA_H-paniculata_contig29589.8042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig29589:2656..3003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |