prot_H-paniculata_contig29549.8037.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig29549.8037.1
Unique Nameprot_H-paniculata_contig29549.8037.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length146
Homology
[Close]
BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.720e-29
Identity = 64/144 (44.44%), Postives = 86/144 (59.72%), Query Frame = 0 
Query:    3 AWNALVKKYNNHTEEARRACHEKLVSTRIEPGQDPNDFFFILDECSQTLEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAMYVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC 146
            AW  L   ++  T+EARRAC  KL  T ++ G+DP+DF   +D+    LEDMG+ + DE YED +L+AL  EY  +R T  +   FGL +IR  +  MY+D LSR S+  SVAG G+A  A     SNVQC  C+  GH   +C
Sbjct:   63 AWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203
[Close]
BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-6
Identity = 31/116 (26.72%), Postives = 55/116 (47.41%), Query Frame = 0 
Query:   31 IEPGQDPNDFFFILDECSQTLEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAMYVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC 146
            +EPG +P+DFF+        LE MG+T+ D  ++D  +Q    +Y+ +++  F    F +  ++  +  +++D   R      +AG G A        S   C  C   GHV ++C
Sbjct:    1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGCAMAT---KTSGPICFECNEPGHVRRNC 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.720e-2944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Y1_9PHAE1.190e-626.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..80
e-value: 1.8E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29549contigH-paniculata_contig29549:964..1401 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29549.8037.1mRNA_H-paniculata_contig29549.8037.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig29549 964..1401 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig29549.8037.1 ID=prot_H-paniculata_contig29549.8037.1|Name=mRNA_H-paniculata_contig29549.8037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
HAAWNALVKKYNNHTEEARRACHEKLVSTRIEPGQDPNDFFFILDECSQT
LEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAM
YVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC
back to top