mRNA_H-paniculata_contig29549.8037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29549.8037.1
Unique NamemRNA_H-paniculata_contig29549.8037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.720e-29
Identity = 64/144 (44.44%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    7 AWNALVKKYNNHTEEARRACHEKLVSTRIEPGQDPNDFFFILDECSQTLEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAMYVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC 438
            AW  L   ++  T+EARRAC  KL  T ++ G+DP+DF   +D+    LEDMG+ + DE YED +L+AL  EY  +R T  +   FGL +IR  +  MY+D LSR S+  SVAG G+A  A     SNVQC  C+  GH   +C
Sbjct:   63 AWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203
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BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-6
Identity = 31/116 (26.72%), Postives = 55/116 (47.41%), Query Frame = 1 
Query:   91 IEPGQDPNDFFFILDECSQTLEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAMYVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC 438
            +EPG +P+DFF+        LE MG+T+ D  ++D  +Q    +Y+ +++  F    F +  ++  +  +++D   R      +AG G A        S   C  C   GHV ++C
Sbjct:    1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGCAMAT---KTSGPICFECNEPGHVRRNC 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29549.8037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.720e-2944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Y1_9PHAE1.190e-626.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29549contigH-paniculata_contig29549:964..1401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.6073403-CDS-H-paniculata_contig29549:963..14011622929902.6073403-CDS-H-paniculata_contig29549:963..1401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29549 964..1401 +
1691481062.2379243-CDS-H-paniculata_contig29549:963..14011691481062.2379243-CDS-H-paniculata_contig29549:963..1401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29549 964..1401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29549.8037.1prot_H-paniculata_contig29549.8037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29549 964..1401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29549.8037.1

>prot_H-paniculata_contig29549.8037.1 ID=prot_H-paniculata_contig29549.8037.1|Name=mRNA_H-paniculata_contig29549.8037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
HAAWNALVKKYNNHTEEARRACHEKLVSTRIEPGQDPNDFFFILDECSQT
LEDMGQTVHDEPYEDTVLQALPTEYERVRITRFEKHDFGLDDIRHMVHAM
YVDNLSRCSNCKSVAGSGIATQAVGYNGSNVQCNYCKGVGHVIQDC
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mRNA from alignment at H-paniculata_contig29549:964..1401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29549.8037.1 ID=mRNA_H-paniculata_contig29549.8037.1|Name=mRNA_H-paniculata_contig29549.8037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig29549:964..1401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCGGCTTGGAATGCCCTGGTAAAGAAGTATAACAACCACACAGAAGA
GGCCAGGCGGGCATGCCACGAGAAGCTGGTCAGTACAAGGATTGAGCCTG
GCCAGGATCCCAACGATTTCTTCTTCATCTTAGACGAATGCAGTCAAACT
CTCGAGGACATGGGGCAGACAGTGCACGACGAGCCCTACGAGGACACTGT
TCTCCAAGCTCTTCCTACCGAGTATGAAAGGGTGCGAATCACCAGATTCG
AGAAGCACGACTTCGGACTGGACGACATCCGGCACATGGTACACGCTATG
TACGTCGACAACCTTTCGCGTTGTTCTAATTGCAAGTCGGTCGCAGGTAG
CGGTATCGCCACGCAGGCGGTCGGGTACAACGGCAGCAACGTGCAGTGCA
ACTACTGCAAGGGTGTCGGGCACGTCATACAGGACTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig29549:964..1401+

>mRNA_H-paniculata_contig29549.8037.1 ID=mRNA_H-paniculata_contig29549.8037.1|Name=mRNA_H-paniculata_contig29549.8037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig29549:964..1401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCGGCTTGGAATGCCCTGGTAAAGAAGTATAACAACCACACAGAAGA
GGCCAGGCGGGCATGCCACGAGAAGCTGGTCAGTACAAGGATTGAGCCTG
GCCAGGATCCCAACGATTTCTTCTTCATCTTAGACGAATGCAGTCAAACT
CTCGAGGACATGGGGCAGACAGTGCACGACGAGCCCTACGAGGACACTGT
TCTCCAAGCTCTTCCTACCGAGTATGAAAGGGTGCGAATCACCAGATTCG
AGAAGCACGACTTCGGACTGGACGACATCCGGCACATGGTACACGCTATG
TACGTCGACAACCTTTCGCGTTGTTCTAATTGCAAGTCGGTCGCAGGTAG
CGGTATCGCCACGCAGGCGGTCGGGTACAACGGCAGCAACGTGCAGTGCA
ACTACTGCAAGGGTGTCGGGCACGTCATACAGGACTGCCATGCGGCTTGG
AATGCCCTGGTAAAGAAGTATAACAACCACACAGAAGAGGCCAGGCGGGC
ATGCCACGAGAAGCTGGTCAGTACAAGGATTGAGCCTGGCCAGGATCCCA
ACGATTTCTTCTTCATCTTAGACGAATGCAGTCAAACTCTCGAGGACATG
GGGCAGACAGTGCACGACGAGCCCTACGAGGACACTGTTCTCCAAGCTCT
TCCTACCGAGTATGAAAGGGTGCGAATCACCAGATTCGAGAAGCACGACT
TCGGACTGGACGACATCCGGCACATGGTACACGCTATGTACGTCGACAAC
CTTTCGCGTTGTTCTAATTGCAAGTCGGTCGCAGGTAGCGGTATCGCCAC
GCAGGCGGTCGGGTACAACGGCAGCAACGTGCAGTGCAACTACTGCAAGG
GTGTCGGGCACGTCATACAGGACTGC
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