mRNA_H-paniculata_contig29543.8036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29543.8036.1
Unique NamemRNA_H-paniculata_contig29543.8036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29543.8036.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.880e-11
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    4 VFRRGIEDCASEDVSFLYHSMGSMELASGRLQDAKAVFAEGLRWYPKNTQLLLGAALAETK 186
            +F RGI + +SEDVSFL HS+GS+ELA+ RL +A+AVF  G+  YP  +QLLLGA LA  K
Sbjct:  728 IFARGIRE-SSEDVSFLCHSLGSLELAADRLGEARAVFLAGVERYPNGSQLLLGAGLAIAK 787
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BLAST of mRNA_H-paniculata_contig29543.8036.1 vs. uniprot
Match: A0A1X6PKZ8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKZ8_PORUM)

HSP 1 Score: 57.8 bits (138), Expect = 3.060e-7
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   28 CASEDVSFLYHSMGSMELAS----GRLQDAKAVFAEGLRWYPKNTQLLLGAALAETKSS 192
            C  ED S+++HS G +EL +    G    A AVFA+GLR YP+N+QLL+GAALA   S+
Sbjct:  644 CTREDTSYVWHSWGMLELHALGEGGGASAATAVFADGLRRYPRNSQLLVGAALAAVASA 702
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29543.8036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0Y9_9PHAE3.880e-1159.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6PKZ8_PORUM3.060e-750.85Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29543contigH-paniculata_contig29543:609..1517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.5348055-CDS-H-paniculata_contig29543:608..8401622929902.5348055-CDS-H-paniculata_contig29543:608..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29543 609..840 -
1691481062.212138-CDS-H-paniculata_contig29543:608..8401691481062.212138-CDS-H-paniculata_contig29543:608..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29543 609..840 -
1622929902.5582733-CDS-H-paniculata_contig29543:1383..15171622929902.5582733-CDS-H-paniculata_contig29543:1383..1517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29543 1384..1517 -
1691481062.2274327-CDS-H-paniculata_contig29543:1383..15171691481062.2274327-CDS-H-paniculata_contig29543:1383..1517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29543 1384..1517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29543.8036.1prot_H-paniculata_contig29543.8036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29543 609..1517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29543.8036.1

>prot_H-paniculata_contig29543.8036.1 ID=prot_H-paniculata_contig29543.8036.1|Name=mRNA_H-paniculata_contig29543.8036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
KVFRRGIEDCASEDVSFLYHSMGSMELASGRLQDAKAVFAEGLRWYPKNT
QLLLGAALAETKSSNIERARELFRRSIQADPTHAHAWQAWGVMESRSGNR
DVARKLWESGLKNCPRHGPLWQ
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mRNA from alignment at H-paniculata_contig29543:609..1517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29543.8036.1 ID=mRNA_H-paniculata_contig29543.8036.1|Name=mRNA_H-paniculata_contig29543.8036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig29543:609..1517- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCTTCCGTCGCGGTATTGAAGACTGCGCTAGCGAGGATGTGTCTTT
CCTGTATCATTCCATGGGATCCATGGAGCTGGCATCGGGCAGACTCCAGG
ATGCCAAAGCCGTCTTCGCGGAAGGGTTGCGCTGGTCAGTTGTATGCTTG
CATCACGTCACTTGTTTTTTTCCCCACTATCTAATCAACAGAACAGTCGT
CTTTCAACTCGCCGTTGGTGCGCAATCACTGACTGCCAATCCGGCCTATC
AATGATTTTGTATCACCTTTCAATCGGGCCCGAATGCACACGATCAATGT
CAACGTTTTAGCCCGTAAGACTCTTTTGCCGTCGAACGCACGTATTTTGA
ATGAAACTGATTTGTTAGTGAAATCTGGTGATGTGTTCAAAAGATTTTTT
TATTTTATTTTTCATGTTACATGAAAATACCATATTTTGTGGTTTTGATC
ATTTTACTGTTGTAAAAATTCAGCTACGGCATGATATATTCTAGTCGGTG
CCAAAAAGTCACGACGGATTGTCGCAGTGCAGGTTTTTTCACCTGTTTCT
TTTTTTTTCATGTAATTTTGAGACTTGACGAGGGTCGCCATTTTATATTT
ATATTTTTTTGTAATACGGTATTAAAAACGTTCGACAGATTAAAAAAACA
AGAAAAATTTTGTCCATAAATATCCAGGTATCCGAAGAACACGCAGCTGT
TGCTCGGAGCAGCCTTAGCGGAGACGAAGAGCAGCAACATCGAGCGGGCT
CGGGAGCTGTTCAGGCGGTCAATCCAGGCGGACCCTACCCACGCCCACGC
CTGGCAAGCCTGGGGCGTGATGGAGTCGAGATCAGGAAACCGTGATGTGG
CTAGGAAACTCTGGGAGAGCGGTTTGAAAAACTGCCCGCGGCACGGGCCC
CTGTGGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig29543:609..1517-

>mRNA_H-paniculata_contig29543.8036.1 ID=mRNA_H-paniculata_contig29543.8036.1|Name=mRNA_H-paniculata_contig29543.8036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig29543:609..1517- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCTTCCGTCGCGGTATTGAAGACTGCGCTAGCGAGGATGTGTCTTT
CCTGTATCATTCCATGGGATCCATGGAGCTGGCATCGGGCAGACTCCAGG
ATGCCAAAGCCGTCTTCGCGGAAGGGTTGCGCTGAAGGTCTTCCGTCGCG
GTATTGAAGACTGCGCTAGCGAGGATGTGTCTTTCCTGTATCATTCCATG
GGATCCATGGAGCTGGCATCGGGCAGACTCCAGGATGCCAAAGCCGTCTT
CGCGGAAGGGTTGCGCTGGTATCCGAAGAACACGCAGCTGTTGCTCGGAG
CAGCCTTAGCGGAGACGAAGAGCAGCAACATCGAGCGGGCTCGGGAGCTG
TTCAGGCGGTCAATCCAGGCGGACCCTACCCACGCCCACGCCTGGCAAGC
CTGGGGCGTGATGGAGTCGAGATCAGGAAACCGTGATGTGGCTAGGAAAC
TCTGGGAGAGCGGTTTGAAAAACTGCCCGCGGCACGGGCCCCTGTGGCAG
GTATCCGAAGAACACGCAGCTGTTGCTCGGAGCAGCCTTAGCGGAGACGA
AGAGCAGCAACATCGAGCGGGCTCGGGAGCTGTTCAGGCGGTCAATCCAG
GCGGACCCTACCCACGCCCACGCCTGGCAAGCCTGGGGCGTGATGGAGTC
GAGATCAGGAAACCGTGATGTGGCTAGGAAACTCTGGGAGAGCGGTTTGA
AAAACTGCCCGCGGCACGGGCCCCTGTGGCAG
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