mRNA_H-paniculata_contig2954.8035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2954.8035.1
Unique NamemRNA_H-paniculata_contig2954.8035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 3.030e-98
Identity = 188/332 (56.63%), Postives = 217/332 (65.36%), Query Frame = 1 
Query:  400 GEFFGEPEWQRAPGRWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLAKIAEKRQSASSSTPRYNKSDRRSAAQ----------LSPLGRRGEGGRQ-GSSPGSRVSLGSDTRAVVDRTGPPQSGAGANGGREAPDGPAHRRESIIEDXXXXXXXXXXXXGGVMLRNTVIRDLKGFGMEHAGPLGRSLISKVMAVSQDNYPEMV 1362
            GEFF EPEWQRA GRW+R EE LLREMK  +  DLR  PPFPEVVG+RRMLRFLRGH +D   AA MM  ML+WR+ NGV+ IRE+IM  K FDPS FPEG++ITKL+P+LVA+PLCVD DGAPISYE+Y FSPRQVTAHA+GDL FFI FHIYCQEFKQICLDSLSDAKEMENLA+ A++             +D R  A                  G GGR  G+  G R        + +   G P   +   GG   P       ES  E              GV+LRNT+IRDL GFGMEHAG +GRSLIS+V+AVSQDNYPEM+
Sbjct:   50 GEFFVEPEWQRAAGRWTRFEEGLLREMKAELQGDLRAAPPFPEVVGTRRMLRFLRGHDHDAAKAAVMMRRMLQWRKDNGVDDIREDIMQNKKFDPSLFPEGEMITKLFPLLVASPLCVDMDGAPISYESYEFSPRQVTAHANGDLGFFIKFHIYCQEFKQICLDSLSDAKEMENLARRAKRASXXXXXXXESTATDPRVPATGXXXXXXXXXXXXXXTTGGGGRDTGAGRGMR-----GRASTIGGGGLPLPESEDKGGTVPPKLEGRGVESEEEGKGPW---------GVVLRNTIIRDLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMM 367
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 6.030e-92
Identity = 186/338 (55.03%), Postives = 220/338 (65.09%), Query Frame = 1 
Query:  400 GEFFGEPEWQRAPGRWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQ---------------VTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLAKIAEKRQSASSSTPRYNKSDRRSAAQLSPLGRRGEGGRQGSSPGSRVSLGSDTRAVVDRTGPPQSGAGANGGREAPDGP--AHRRESIIEDXXXXXXXXXXXXGGVMLRNTVIRDLKGFGMEHAGPLGRSLISKVMAVSQDNYPEMV 1362
            GE F EPEWQRA GRW R EE LL EMK  + +DL+  PPFPEVVG+RRMLRFLRGH +D   AA MM  ML+WR+ NGV+ IRE+IM  K FDPS FP+G++ITKL+P+LVA+PLCVD DGAPISYE+Y FSPRQ               VTAHA+GDL FFI FHIYCQEFKQICLDSLSDAKEMENLA+ A KR S+ S  P  + +   +  ++  +G    GGR G    +    G DT A     G   +     GG   P+              XX           GV+LRNT+IRDL GFGMEHAG +GRSLIS+V+AVSQDNYPEM+
Sbjct:  122 GELFVEPEWQRAAGRWPRFEESLLTEMKAELQDDLKAAPPFPEVVGTRRMLRFLRGHDHDAAKAAAMMRRMLQWRKDNGVDDIREDIMQNKKFDPSLFPDGEMITKLFPLLVASPLCVDMDGAPISYESYEFSPRQASYSKWCTISNQSNTVTAHANGDLGFFIKFHIYCQEFKQICLDSLSDAKEMENLARRA-KRASSPSRPPTESTA---TGPRVPAIG----GGRSGGXXXTTGGEGRDTGAGRGMRG--NASTIGRGGLPLPESEDXXXXXXXXXXXXXVESEKEGEEPWGVVLRNTIIRDLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMM 449
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S3GTP2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTP2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.510e-25
Identity = 59/157 (37.58%), Postives = 91/157 (57.96%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKE 912
            RW+  E++ +  +K  + E L   P FPE+VG R+M+RFLRGH +D+   + +M+   KWR  N V+ IR  I+   +  P +FP+G+LI  L P L+  P   D  G PI  E Y F+P +V  +   D   +I F +Y  EFK + +++LS+ +E
Sbjct:    3 RWTPQEQECIATLKNRLKEQLEASPQFPEIVGERKMIRFLRGHNFDIDKVSNLMANFFKWRMDNKVDEIRTNIVERGMDHPLKFPKGELILSLIPQLILVPHAQDKLGCPICVEQYNFTPSEVFKYITIDD--YILFVLYSLEFKSLIVEALSEQRE 157
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BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S3M0V6_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0V6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.280e-25
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEM 915
            RW+  E++ +  +K  + E L   P FPE+VG R+M+RFLRGH +D+   + +M+   KWR  N V+ IR  I+   +  P +FP+G+LI  L P L+  P   D  G PI  E Y F+P +V  +   D   +I F +Y  EFK + +++LS+ +E+
Sbjct:    3 RWTPQEQECIATLKNRLKEQLEASPQFPEIVGERKMIRFLRGHNFDIDKVSNLMANFFKWRMDNKVDEIRTNIVERGMDHPLKFPKGELILSLIPQLILVPNAQDKLGCPICVEQYNFTPSEVFKYITIDD--YILFVLYSLEFKSLIVEALSEQREL 158
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S3H8R6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8R6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.450e-24
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLA 927
            RWS  EE  L E+K  + + L   P FPEVVG RR++RF+R   +++  A KM+S MLKWR+AN V+ IR++I+      P +FP G  I  + P ++     VD  G P++ E + FSP+ V      D   ++ F IY  E++ I L+ LS  KEM+ LA
Sbjct:    4 RWSVREENALTEVKRRLKDQLANRPQFPEVVGDRRLIRFIRAKDFNIDVACKMISNMLKWRDANHVDDIRQDIVYGGKDTPLKFPFGKTIIDIVPQIIITANSVDKLGRPLAMEMFNFSPKDVLDAITVDD--YLVFLIYSLEYRAIVLEQLSHEKEMKYLA 163
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S3H8P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8P7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.130e-23
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLA 927
            RWS  EE  L E+K  + + L   P FPEVVG RR++RF+R   +++  A KM+S MLKWR+AN V+ IR++I+      P +FP G  I  + P ++     VD  G P++ E + FSP+ V      D   ++ F IY  E++ I L+ LS  KEM+ LA
Sbjct:    4 RWSVREENALTEVKRRLKDQLANRPQFPEVVGDRRLIRFIRAKDFNIDVACKMISNMLKWRDANHVDDIRQDIVYGGKDTPLKFPFGKTIIDIVPQIIITANSVDKLGRPLAMEMFNFSPKDVLDAITVDD--YLVFLIYSLEYRAIVLEQLSHEKEMKYLA 163
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S1XZT6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZT6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.390e-22
Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:  436 PGRWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSD 903
            P +W   E + L  +++++A ++   P +PEVVG RR LRFLRGH+ +V+ A + +  ML WR   GV+ IR +I+   L  P Q P GD +  ++PV++    C+D  G P+S E +GF+P +  A  +      ++FH Y  E K + L   S+
Sbjct:    6 PPKWLPEEVEALAAVRQLLAAEIAASPMYPEVVGDRRFLRFLRGHQMNVEVATEKIRDMLAWRAEYGVDDIRADIVARGLTSPWQAPSGDKMRGIFPVMIPMRTCLDKRGFPVSVENFGFNPEEALAVCEPQD--ILNFHFYVMEMKALVLARWSE 159
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S1XKC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKC0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.070e-20
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLA 927
            +WS  E   + +++  +  ++    PFPEVVG RR++R+LRGHK DV   ++ M  ML WR+  G++ IR +I++ ++  P   P  + +  +YP+ + +  CVD  G  ++ E + FS  Q   H  G     + +H Y  E K + L+ L D  + E  A
Sbjct:   26 KWSEAELAAMNDLRHALEPEISHAVPFPEVVGERRLMRYLRGHKLDVAACSEKMRRMLVWRKEAGIDAIRADIISSRITGPQSLPRYEDMHSIYPIYLPSRRCVDLKGNLVTIERFAFSVEQAL-HVLGPED-ILQYHFYVMELKTLILERLCDDMDAERAA 185
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7S1TPF8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPF8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.970e-20
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 1 
Query:  442 RWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLA 927
            +WS  E   + +++  +  ++    PFPEVVG RR++R+LRGHK DV   ++ M  ML WR+  G++ IR +I++ ++  P   P  + +  +YP+ + +  CVD  G  ++ E + FS  Q   H  G     + +H Y  E K + L+ L D  + E  A
Sbjct:   26 KWSEAELAAMNDLRHALEPEISHAVPFPEVVGERRLMRYLRGHKLDVAACSEKMRRMLVWRKEAGIDAIRADIISSRITGPQSLPRYEDMHSIYPIYLPSRRCVDLKGNLVTIERFAFSVEQAL-HVLGPED-ILQYHFYVMELKTLILERLCDDMDAERAA 185
[Close]
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Match: A0A7R9UB72_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB72_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.010e-18
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 1 
Query:  436 PGRWSRHEEKLLREMKEIMAEDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNVIREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGFSPRQ-VTAHADGDLSFFIHFHIYCQEFKQICLDSLSD 903
            P +WS  E + L +++            FPEVVG RR+LRFLRGH Y V   A  M  ML+WR++ G++ IR +IM  ++  P   P+ + + ++YP+ + +  CVD  G  ++ E + F   + +   +  D+   + FH Y  E K + L+   D
Sbjct:   31 PPKWSASEREALAQLRAXXXXXXXXXXXFPEVVGERRLLRFLRGHAYQVDKCADKMRRMLQWRKSAGIDSIRADIMQSRVTGPQMLPKYEEMRRIYPIHLPSRRCVDIRGTMVTIERFAFRVEEALNVLSPEDI---LRFHFYVMELKVLILERHCD 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2954.8035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LMR4_ECTSI3.030e-9856.63CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNT5_9PHAE6.030e-9255.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GTP2_9STRA2.510e-2537.58Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3M0V6_9STRA5.280e-2537.34Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3H8R6_9STRA1.450e-2440.12Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3H8P7_9STRA2.130e-2340.12Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XZT6_9STRA1.390e-2235.90Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S1XKC0_9STRA1.070e-2032.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TPF8_9STRA5.970e-2032.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UB72_9STRA1.010e-1832.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2954contigH-paniculata_contig2954:11538..18323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue2.4e-87
Seed eggNOG ortholog2880.D8LMR4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1362
Cds size1167
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2954.8035.1prot_H-paniculata_contig2954.8035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2954 11733..18323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.3585265-UTR-H-paniculata_contig2954:11537..117321622929902.3585265-UTR-H-paniculata_contig2954:11537..11732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 11538..11732 +
1691481062.1362722-UTR-H-paniculata_contig2954:11537..117321691481062.1362722-UTR-H-paniculata_contig2954:11537..11732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 11538..11732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.3767326-CDS-H-paniculata_contig2954:11732..119661622929902.3767326-CDS-H-paniculata_contig2954:11732..11966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 11733..11966 +
1691481062.146994-CDS-H-paniculata_contig2954:11732..119661691481062.146994-CDS-H-paniculata_contig2954:11732..11966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 11733..11966 +
1622929902.3877027-CDS-H-paniculata_contig2954:12211..123451622929902.3877027-CDS-H-paniculata_contig2954:12211..12345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 12212..12345 +
1691481062.1559746-CDS-H-paniculata_contig2954:12211..123451691481062.1559746-CDS-H-paniculata_contig2954:12211..12345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 12212..12345 +
1622929902.3999949-CDS-H-paniculata_contig2954:14689..148121622929902.3999949-CDS-H-paniculata_contig2954:14689..14812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 14690..14812 +
1691481062.1668608-CDS-H-paniculata_contig2954:14689..148121691481062.1668608-CDS-H-paniculata_contig2954:14689..14812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 14690..14812 +
1622929902.428263-CDS-H-paniculata_contig2954:15524..156451622929902.428263-CDS-H-paniculata_contig2954:15524..15645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 15525..15645 +
1691481062.1770298-CDS-H-paniculata_contig2954:15524..156451691481062.1770298-CDS-H-paniculata_contig2954:15524..15645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 15525..15645 +
1622929902.4423852-CDS-H-paniculata_contig2954:16649..167211622929902.4423852-CDS-H-paniculata_contig2954:16649..16721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 16650..16721 +
1691481062.1851656-CDS-H-paniculata_contig2954:16649..167211691481062.1851656-CDS-H-paniculata_contig2954:16649..16721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 16650..16721 +
1622929902.4654365-CDS-H-paniculata_contig2954:17714..177971622929902.4654365-CDS-H-paniculata_contig2954:17714..17797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 17715..17797 +
1691481062.1931813-CDS-H-paniculata_contig2954:17714..177971691481062.1931813-CDS-H-paniculata_contig2954:17714..17797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 17715..17797 +
1622929902.4814477-CDS-H-paniculata_contig2954:17923..183231622929902.4814477-CDS-H-paniculata_contig2954:17923..18323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 17924..18323 +
1691481062.2014844-CDS-H-paniculata_contig2954:17923..183231691481062.2014844-CDS-H-paniculata_contig2954:17923..18323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 17924..18323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2954.8035.1

>prot_H-paniculata_contig2954.8035.1 ID=prot_H-paniculata_contig2954.8035.1|Name=mRNA_H-paniculata_contig2954.8035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=389bp
MAAAPASVPPRSNRRTSNIILTSSASSSSVEDDPSGRTSTSSPEAEDAAA
ADRETRQQQSANSRWSSSGEFFGEPEWQRAPGRWSRHEEKLLREMKEIMA
EDLRCHPPFPEVVGSRRMLRFLRGHKYDVQHAAKMMSAMLKWREANGVNV
IREEIMNEKLFDPSQFPEGDLITKLYPVLVANPLCVDFDGAPISYETYGF
SPRQVTAHADGDLSFFIHFHIYCQEFKQICLDSLSDAKEMENLAKIAEKR
QSASSSTPRYNKSDRRSAAQLSPLGRRGEGGRQGSSPGSRVSLGSDTRAV
VDRTGPPQSGAGANGGREAPDGPAHRRESIIEDGGGGEGEEEEEPGGVML
RNTVIRDLKGFGMEHAGPLGRSLISKVMAVSQDNYPEMV
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mRNA from alignment at H-paniculata_contig2954:11538..18323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2954.8035.1 ID=mRNA_H-paniculata_contig2954.8035.1|Name=mRNA_H-paniculata_contig2954.8035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6786bp|location=Sequence derived from alignment at H-paniculata_contig2954:11538..18323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCTTGGAGCAGAGTCTACACGACGGGACGCAGCGACAGCTGTACAA
CCGTCAGTTGGGAGTGAGTAGGCGAGGTGATATCATGCCCTAAAGGCTCG
TAACTCTCCTAGCATCCTTCAACAAAGACCACATCAGCAGATTCAAATCA
GGCGAAACTACCTCCTTCACTATACCTATCCAACGGTCTGCAGAGATGGC
CGCTGCCCCGGCTAGTGTGCCTCCACGGAGCAATCGTCGCACCTCCAACA
TCATCCTCACCTCCTCGGCATCTTCCTCGAGTGTTGAGGATGATCCATCG
GGAAGGACGTCTACCTCTTCTCCCGAAGCTGAAGATGCCGCCGCTGCAGA
TCGTGAGACGCGGCAGCAACAATCTGCGAACAGTCGTTGGTCGAGCAGTG
GAGAATTCTTTGGGGAGCCAGAGTGGCAGGTGTGAGGAGCAATCACCTAC
CCAACAAGCCGACACTACGAGCATCAGATCAGTAGTGAAAAGCGACTGGC
CGCATGTTCCATGCCTGTCAAGATGATCCGTTCTCGGGATCTACTACGGC
ACTTTTTGTTTTGGAGGGATTGTTGAATTCCTTTCTTGATACTGCTGCTA
CTGGAACAAGCAGCCCTATGAATGACACCCCCTTATGTTTTCTTCTGCTG
GTACGGCTGCTGCTCCTGCTACAGAGAGCACCAGGGCGGTGGAGCAGACA
CGAAGAGAAGCTGCTGCGAGAGATGAAGGAGATCATGGCGGAGGACCTCA
GGTGCCACCCACCCTTTCCCGAGGTTGTCGGCAGCCGACGGATGCTACGC
TTTCTAAGGTAAGCAATACTGCCTTTGCATTCATGATCTGCTCTTTGCTG
GTTACACCATCAGTCAGCATTCGTCCGCTCTTTCCGTTACCCAATTAGAG
GGCGAAACGCGCCCAATACTCTTTGCAATGACTGGTACAAACATCGCAAA
GTTGATGTTACAATTTCCCATCATCGGGCAATTGTGCCGCTATCGCTTGT
GGGGAAACGTACCGTATTTCACCGAGATCATGAGTTGTCTGGTGAGGTCT
GGAGATGCGTCAGCGATAGGGATAGGGGAATAAGTTCGAGTTTTGTTTTG
ATAACACTTTCATCACTTGAACAAAAATGGGCGCTTTCATCACTTGATCA
TTTACCCCGGCTGCCGCGATAAGCTGTCTACTGTTGATTGTAAATGTCGG
TGGGTCGAAATTCTTAACCATGCGTCACCAGCGCTTCCCCACAGGAATGT
TCATCTTCGAGGCATTACCATCTCGGCTCCACGAGAACAGCTAACACAAG
CTGATAGTAGTCGCGGGATAGATTCTCCCATTCTACATATGTCCATTTTC
GTCGATTAAGATGGGCCGATCCATACCACACCCCCCCCTATGCACAGTCC
TTTCTTTATTACGACTATGGGGTTGTGCCTGCCTGTGTTTCATTGTTGCA
CAGATTCAGCGAAAAACGTTCTTCAAACTCAACATGGGCATGTAGCTACC
GTGCGCGTACACAATTGTGGTCATTTGAAGTGTTCGTGCAAAGTCGTCGC
TGCGCAGCGGCGGGCCAGAGCGAGTGCACACGCTGCTTCGAGGTCCTAAA
TAACATACGCGCTGTCGGCCAATCATATCCTACCCCATGACGCATTCCAG
CTACTCGTCTTCACCCGTTAGACGTCGCAGAGGAGCTGTGTGGATGTACT
TGGACACGCGGAGAATTGCCAACGGAATAATTTTTTGCAGGAAATAAAAC
GCCTACTTGTAGGAATATTACGATATTCCAAATGGTTCCCCAGAAAATAG
TGTTTTTGTCGTCATAATCCGCCATCACGACTTGGGGCAGACTGGCTGCT
GCCGTGTCTGAGTGCAGTCCTACAGCAGCACGCCATACACGCGTGTACGG
CGGCTACCGCTACGGATATTTGGGGGGATGTTGGCTGTTGCCAACGTACC
AAAATCTCTTTTCACTGATTTTGTCGCAAACCACTAGAATGACGCAGACA
TGCACATGTCGCGCTCCTGTCTGTTTCTGCTACTGCTGCACACAATAAGT
AAGGTATTATGTTGAATCCCCATCCAGCTGGCCACCACCGCTCGATCGAG
CCACCGTACTGTGTTTACTGCAGTACGGTCTTACATGCAGTGTTTTGGCT
ACAGCCACCAGCGTTTTACGCACGTCAATTCAAAATGATCAAAATAGGGC
ACCCCTTTAAGCGCGAGTGTCCAAAATTTCTCCATGCTTTCTATAAATAT
TGTTCAAGGTGCCGCGGAACTAACTTACACCTTCCTGTGATTTGGCTCCG
TCGGTCCGAACGCGTCTGATTTCACTCGCCGACCAGATTTTGCTTGGTGC
TTGTCTGTCTGTCTGCTATCTATCATGTGCGCCATCGCCGTGCGCAACAA
CTGCACTGTAGTCTGTCGAATATTTGTCCATTTGTCTATGACCACTCAAT
TAGTGCGCTGCAATTTCGTCAAAATTGTGTAGTACACCTAGACAATGACC
ACCGCTTCTGCACGTTGTTCCTCAAAGTTTTCTGGTCTATTCCTTCCCAC
AACGATCTTCGTGCACGGGTTTGGGTGATGCCGTAACATATTCAGGCAAA
CGTGTAAGTGTATTTGTGTTTTGTGCGTGTTTACTTGTACTTTCTGTGCC
ACATGTATGCGTGTGAGGTGTATCCGATACGGGTGAAATCAAGTTCGGTA
CGTCACAGGCAAACATATGCGGATGCTGTTTGTAGGATTTTCGCTCTTGT
CTGAATTGTATCCTGGCACTGAAAAACCATACAAGCAGAGCTGCCGTCGA
TTTCCAGCAGCTGTGACACCGAAATACAGTTGAAAGCACGTGGTATACTG
AGACCTCATTAGCGTGTATATTTGGTCACACTGGTTCGCTACTGTGTCTC
TCTCTTTGCGCGAAGTGCTACGTCTCTTGGCTTGGACACAGCAGCAGCTG
ATCTGGCATCCACGCCCTTTCCGTTCAGTGCAGTGCACGTTGGACACAAT
ATTGAAACACCCCGTGAAGGTTAACATGGTGTGCATAACGTCTGATTACG
ACACCAAAACTATAAGATAAAAACGTGCGAGTGTACAGTTTACACATTAA
GAGTACCTATCTTGTAATCCGTCATTTTGATCCGTGTCGGGATAAAAATC
AGGGGCCACAAGTATGACGTGCAGCACGCGGCAAAGATGATGTCCGCCAT
GCTTAAGTGGCGGGAGGCCAACGGAGTCAACGTCATCAGAGAAGAAATCA
TGAACGAAAAACTCTTCGACCCGAGGTGCGTCGGTTGGCTGGATTATAAA
TAATGCGAGTGCTTGACGTGGTAATGGTCAGGGTGGGGTCTGAGTTCGGT
TGGGCTACTGATCGAGCAATGGCGTATCCGTAGGTAACGAGGGCGTCCGA
GGGCAGTACCCCATTGGCGTACAGTAGCCGCGGCTTAGTCTCCAGTGTTT
GAAGAAAGCATATAAACGCCGCGATAAGCGACGGCCGACTCACGCAGTAC
TGTGAGGTAAACTTGGTGGTACTGTTTCCCCCCGTAGATCCGTCATGTTC
TGATATTTTCACACACATAAGACATGGCTGTTCGCGGTAGACAGCCCTAG
ACTCTGAGGCATCCTTTTCATTCTCTTTTACCTCGAACGTTTCATCGGCG
GGAAAAGTCATTCAGCTTGACCATCTCGGAATCTTCCCGATCATGCCTTA
ATTTACGACCGACGACAGTATTGTAGGTTATCCTGTACAGAGTACCCTCG
CTTCTGTTGATTGAAGTTTGCTAGTACTCTCCACCTTTCAACTTTTTCCA
CGTCCCGAGGAGCAAGCTTGTCGTACATGACAGAAATGAAATTAACAGCA
TTCAGGCAGTTATATGTAATATCTTAGGTTGCGACCGACTCCTGCTGTGA
CCCGACTCCTGTATCTTTTCGTCGCGCATCCAAAACTGCTGTGTGGCGCG
TCAACTGTACTGTCAAATGACGAAAAACTCTGAGCAGTCAGTTCCCCGAG
GGTGACTTGATCACCAAGCTTTATCCAGTGCTCGTGGCGAACCCTCTGTG
CGTCGACTTCGACGGGGCACCGATATCCTATGAGACTTACGGCTTCAGCC
CAAGACAGGTTTGGAAGAGTGGAAAAGCCTAGCTTGCTTCCATTTGGAAT
ATATGTATTCTGCAAGAGAGGGGGGGAGCGGGGGGCATAATCATGTTTTG
TATGTTATAGTCATTAGATCGTTGACCACACGTCGTCGGGAGGATGGAGC
TTTGTTCCTATCACGTGCGGAGGTCTTTTAAACGGCAGTCATGACTATAT
AGTCTTATCATCAAATATCAAACACCAGAAGGGGGAAAGAGGGTGTGGGA
TACATTTTGTATTACACTTTCGTACATCACTGAAAGCTCACAATTTGTAA
GGCAAAGCAATTCGGGTGCACTGATACTGGGGGACGGGGTGTAGAGGTCA
GTAATACGTGTTTTTCACGGTTTATTAGTAGCGCTTTGCTACTCCTATTT
CGCAGTGTTGAGTACATCGGCACGGAGACAGCGCGTAATAGAAGGGGGTA
CGAAAGGGGTAGAACGAAGACGAGCTGCGAGCTGTTATCACTAGAAGACA
TACTGTCCCGGTGGACGCGAGGGAGAGGAGGGATATTGAGATAGACCGAG
GATGATCCCTGTCTCCCGTTCTGTTCTTCATACCAATGTTTAATTTTCGG
GGGAAATTGCTTAACCGGCTCCTGATTGTCGTGAACGGTGCTCGGCTCTA
GTTCTATCCCCTCAAGCTTGTTGATTTCGCCGCCCGGAGAGATCGGTCGA
AGATGGACACAGGATTGCTTCGAAGCAGTGCAGTGTGGCGAAATAAGTGC
CGTTAGAAGGGATGTATCGTTGTTGTCACCTAATTGGGCAACCTGATGTA
CAATTGCCACACATTCAAGCTAGCAAGGGGCATTTGATGTATCCCTTAGT
TCACAACAAGCAGGCCAATGAGAGAGGGGTTTTGATCCTCCCGTTCTTGA
GAAATTTCCAATTTTCCATTTATTTATTTTTTCCTTTCCATAGCTGTGTA
AGCGCGTGTTGAGGCTTTTGATCAATTGAGTGAGGACAATGCTGCGTTCT
GGAACTGGGCAGGTGACGGCGCACGCAGATGGTGACCTCAGTTTCTTCAT
TCATTTTCATATCTACTGCCAGGAGTTCAAGCAGGTGCGAAAGTGGCATA
TCTGGAAAATGCTCCGAAGAACAGCACGGGTTGTGTCAATCATGACTGAG
GGATGAGAAACCGTGTTGCCTACAGGCTGCAGAGTAAGCATGCTAGCGTC
TATGTAAATCTCGTTGTGGTTCGTTGTTGTTATTCTAGTGGTGGTGGTGT
GGTGATAATGTTCGAACACAGCCCTGCAGATACGAAAGTGTGACCACCAC
ATTTACTGTATGGGAACTTGGGGACTAGCTGGATTTGGTGCTGGCACAGA
CGGTGGGTTTGCAGACTATTTTAGCAGGCACAACAATTCGTGGCGTTGTG
ATGAACTGTTCCAGCAGCTGCGTGTCCAAATCCTAACATGTAAGAAGTGC
TTCTCAAGTTTCGTCCCGAGATGTTGTTGCTCGAATAAGTGCGAATTACA
GCACATGACACGCGGCTAGCTTAAGAAAATAAAACTTGGTAAAGGGAGCA
TTAGACGTTGAACTTTGCCTTCGGAGCCTATCGCAGAATGAAGTACAGGA
CGTGATTAGAAATATTACCGATGGTGAGCTCCTGTCTGCCGCTTGTTAAT
CTCCCCACTCTCTTAAGATTATAAAATTGCTCATGGGTATAAATGGGCAT
GGTTGATGATGATGGGGGTATATAACCCCAATTTCCCCTGTTGATCTAAT
CACTCCCCACCCTCCTTTAGGTTGGTCAAACATCGTATATCTAACTCAGC
ACCATTGAAAGTACTGAGGATACCAGCACTTTCTTCTTGTCTGACGATTA
TTTTTATGGTTTTTGACTCTCATTGTAGATTTTGTGATTTTCCGTCTCCC
CTTGTTCTATTTTCTCTGGGAAGTGTTTCCAAGTGAAAATGGAAGTCAAA
CGCGTAACCTCAACATAGGTATAACGCTGTTATGATATGAGGCGGCAGGG
TTAAATCACGTCAATAATTATTATTCCGGGGAGTGAAACGATTTCTTCCC
CCTCCCCTCGAAACCCCTCGTCCCCAGATTTGCCTGGACAGTCTGTCAGA
CGCGAAAGAGATGGAGAATCTAGCAAAAATAGCCGAAAAGAGGCAGAGTG
CATCATCATCGTCGTCGTCGTCGTCATCGCCCCTGCCGCCGGAAACAACT
GGCGACATGAATCATTATCACCATCACCTACAAAAGAAACGACAAAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGCCACGATACA
ACAAATCGGATAGGCGCTCCGCCGCGCAACTGTCGCCATTAGGCAGGAGA
GGAGAAGGAGGGCGGCAAGGGTCTTCGCCTGGGTCGAGGGTGTCACTGGG
AAGTGATACGAGGGCGGTGGTTGACCGGACCGGTCCGCCACAAAGCGGTG
CCGGCGCCAACGGTGGAAGAGAGGCACCAGACGGACCGGCGCACAGGCGG
GAGAGCATTATTGAGGACGGGGGGGGGGGAGAAGGGGAGGAAGAGGAGGA
GCCGGGGGGAGTGATGCTGAGGAATACGGTCATCAGGGACCTGAAGGGGT
TCGGCATGGAGCACGCAGGTCCTCTCGGGCGGTCGCTGATTTCGAAAGTT
ATGGCTGTTAGTCAGGACAACTATCCCGAGATGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2954:11538..18323+

>mRNA_H-paniculata_contig2954.8035.1 ID=mRNA_H-paniculata_contig2954.8035.1|Name=mRNA_H-paniculata_contig2954.8035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at H-paniculata_contig2954:11538..18323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCTGCCCCGGCTAGTGTGCCTCCACGGAGCAATCGTCGCACCTC
CAACATCATCCTCACCTCCTCGGCATCTTCCTCGAGTGTTGAGGATGATC
CATCGGGAAGGACGTCTACCTCTTCTCCCGAAGCTGAAGATGCCGCCGCT
GCAGATCGTGAGACGCGGCAGCAACAATCTGCGAACAGTCGTTGGTCGAG
CAGTGGAGAATTCTTTGGGGAGCCAGAGTGGCAGATGGCCGCTGCCCCGG
CTAGTGTGCCTCCACGGAGCAATCGTCGCACCTCCAACATCATCCTCACC
TCCTCGGCATCTTCCTCGAGTGTTGAGGATGATCCATCGGGAAGGACGTC
TACCTCTTCTCCCGAAGCTGAAGATGCCGCCGCTGCAGATCGTGAGACGC
GGCAGCAACAATCTGCGAACAGTCGTTGGTCGAGCAGTGGAGAATTCTTT
GGGGAGCCAGAGTGGCAGAGAGCACCAGGGCGGTGGAGCAGACACGAAGA
GAAGCTGCTGCGAGAGATGAAGGAGATCATGGCGGAGGACCTCAGGTGCC
ACCCACCCTTTCCCGAGGTTGTCGGCAGCCGACGGATGCTACGCTTTCTA
AGAGAGCACCAGGGCGGTGGAGCAGACACGAAGAGAAGCTGCTGCGAGAG
ATGAAGGAGATCATGGCGGAGGACCTCAGGTGCCACCCACCCTTTCCCGA
GGTTGTCGGCAGCCGACGGATGCTACGCTTTCTAAGGGGCCACAAGTATG
ACGTGCAGCACGCGGCAAAGATGATGTCCGCCATGCTTAAGTGGCGGGAG
GCCAACGGAGTCAACGTCATCAGAGAAGAAATCATGAACGAAAAACTCTT
CGACCCGAGGGGCCACAAGTATGACGTGCAGCACGCGGCAAAGATGATGT
CCGCCATGCTTAAGTGGCGGGAGGCCAACGGAGTCAACGTCATCAGAGAA
GAAATCATGAACGAAAAACTCTTCGACCCGAGTCAGTTCCCCGAGGGTGA
CTTGATCACCAAGCTTTATCCAGTGCTCGTGGCGAACCCTCTGTGCGTCG
ACTTCGACGGGGCACCGATATCCTATGAGACTTACGGCTTCAGCCCAAGA
CAGTCAGTTCCCCGAGGGTGACTTGATCACCAAGCTTTATCCAGTGCTCG
TGGCGAACCCTCTGTGCGTCGACTTCGACGGGGCACCGATATCCTATGAG
ACTTACGGCTTCAGCCCAAGACAGGTGACGGCGCACGCAGATGGTGACCT
CAGTTTCTTCATTCATTTTCATATCTACTGCCAGGAGTTCAAGCAGGTGA
CGGCGCACGCAGATGGTGACCTCAGTTTCTTCATTCATTTTCATATCTAC
TGCCAGGAGTTCAAGCAGATTTGCCTGGACAGTCTGTCAGACGCGAAAGA
GATGGAGAATCTAGCAAAAATAGCCGAAAAGAGGCAGAGTGCATCATCAT
CATTTGCCTGGACAGTCTGTCAGACGCGAAAGAGATGGAGAATCTAGCAA
AAATAGCCGAAAAGAGGCAGAGTGCATCATCATCCACGCCACGATACAAC
AAATCGGATAGGCGCTCCGCCGCGCAACTGTCGCCATTAGGCAGGAGAGG
AGAAGGAGGGCGGCAAGGGTCTTCGCCTGGGTCGAGGGTGTCACTGGGAA
GTGATACGAGGGCGGTGGTTGACCGGACCGGTCCGCCACAAAGCGGTGCC
GGCGCCAACGGTGGAAGAGAGGCACCAGACGGACCGGCGCACAGGCGGGA
GAGCATTATTGAGGACGGGGGGGGGGGAGAAGGGGAGGAAGAGGAGGAGC
CGGGGGGAGTGATGCTGAGGAATACGGTCATCAGGGACCTGAAGGGGTTC
GGCATGGAGCACGCAGGTCCTCTCGGGCGGTCGCTGATTTCGAAAGTTAT
GGCTGTTAGTCAGGACAACTATCCCGAGATGGTGCACGCCACGATACAAC
AAATCGGATAGGCGCTCCGCCGCGCAACTGTCGCCATTAGGCAGGAGAGG
AGAAGGAGGGCGGCAAGGGTCTTCGCCTGGGTCGAGGGTGTCACTGGGAA
GTGATACGAGGGCGGTGGTTGACCGGACCGGTCCGCCACAAAGCGGTGCC
GGCGCCAACGGTGGAAGAGAGGCACCAGACGGACCGGCGCACAGGCGGGA
GAGCATTATTGAGGACGGGGGGGGGGGAGAAGGGGAGGAAGAGGAGGAGC
CGGGGGGAGTGATGCTGAGGAATACGGTCATCAGGGACCTGAAGGGGTTC
GGCATGGAGCACGCAGGTCCTCTCGGGCGGTCGCTGATTTCGAAAGTTAT
GGCTGTTAGTCAGGACAACTATCCCGAGATGGTG
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