mRNA_H-paniculata_contig2954.8034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2954.8034.1
Unique NamemRNA_H-paniculata_contig2954.8034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: D8LMS2_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS2_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 3.660e-120
Identity = 175/209 (83.73%), Postives = 194/209 (92.82%), Query Frame = 3
Query:  255 VLASSNPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            VLASSNP+ELNGGSC+AMAGKGCVALAVDRRFGLEGQLVS +AKRVLKVN +LLCGFTGLWTDV+TVMQDLS EVALK L E ++ I+PAALAGLLSTLLY+RR SP+FVEPIVAGLD RG+PYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFF+ GME EEL + ASRCLL+AL+RDCLSGYGAVVHL+T +G+ETRE+ TRMD
Sbjct:   12 VLASSNPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A835YVV6_9STRA (Proteasome beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.460e-67
Identity = 111/200 (55.50%), Postives = 147/200 (73.50%), Query Frame = 3
Query:  270 NPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDD-FVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREV 866
            +P+ELNGGSC+ MAG+ C+A+AVD+RFG   +LVS +A+RVLK++ RLLC FTGL TDV T+MQDL+   A   +  E + + PAA A LLS++LYARR SP+F E IVAGL    + ++   D+LGA    +D F V GTSA+SLYG CEAF++  M PEEL   A  CL+AAL+RDCLSG+G VVHL+T +G+ +RE+
Sbjct:   32 SPLELNGGSCLVMAGRKCLAVAVDKRFGKGNELVSDNARRVLKLHSRLLCAFTGLTTDVQTLMQDLAAAAASYTI-TEGRPLQPAAAAALLSSMLYARRRSPYFCETIVAGLTRSAEAFVRSHDVLGAAGGAEDGFAVMGTSAESLYGLCEAFYRPDMTPEELADTAEHCLVAALERDCLSGHGVVVHLLTEQGISSREL 230          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: M2W804_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W804_GALSU)

HSP 1 Score: 217 bits (553), Expect = 1.840e-66
Identity = 104/199 (52.26%), Postives = 142/199 (71.36%), Query Frame = 3
Query:  285 NGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            NGG  +AMAG  CVA+A DRRFG++   +  D  R+ K+N RL+ G TGL TDV T+       + L  L EE + I PA+ A ++++ LY+RR SP+FVEP+VAGL  +G+PYLC QD+LGAP+  +DFVV+GT A+SLYGT E F+K  + P EL +  S+ LLAA+DRDCLSG+GA+VH++T  G+ET+ +  RMD
Sbjct:    9 NGGCVLAMAGDNCVAIAADRRFGVQQTTIGTDTTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLREERE-IKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQDLLGAPLFAEDFVVSGTCAESLYGTSETFWKPNLSPAELFEVTSQSLLAAVDRDCLSGWGAIVHMITLNGIETKVLKARMD 206          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A2V3J6M2_9FLOR (Proteasome subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6M2_9FLOR)

HSP 1 Score: 212 bits (540), Expect = 1.560e-64
Identity = 99/202 (49.01%), Postives = 145/202 (71.78%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            +E NGG  +AMAGK CVA+A D+R G++   V+ DA R+ +++ +L  G TGL TD+ T+ Q   F++ L  +  EN+++ P   A L+S+ LY++R +P+F EP++AGLD   +PY+C  D+LG   E  +FVVAGT A+SL+GTCE F+K  +EP+EL +  S+ LLAALDRDC+SG+GAVVH++T  GV+T+E+  RMD
Sbjct:    4 LEYNGGCVLAMAGKECVAIASDKRLGVQLTTVAMDANRIFRMHDKLYLGLTGLMTDIQTLDQLFRFKLELYAM-RENRLMKPKTFASLVSSTLYSKRFAPYFSEPVIAGLDKDNKPYICSMDLLGCVAEETEFVVAGTCAESLFGTCETFYKKDLEPDELFETVSQALLAALDRDCISGWGAVVHIITKDGVQTKELDGRMD 204          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A3P3Y3V5_PLABS (Proteasome subunit beta n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3V5_PLABS)

HSP 1 Score: 212 bits (539), Expect = 2.210e-64
Identity = 97/202 (48.02%), Postives = 145/202 (71.78%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            +E NG + +AM GK CVA+A D R+G++ Q V+ D +++ K++ RL  G +GL TD+ TV   L F++ L  L EE + I P   A L+ST+LY++R  P+FVEP+VAG+D +G+P++C  D++GAPV  +DFVV+GT+++ LYGTCE+ +   + PEEL +  S+ LLAA+DRDCLSG+GA VH++T  GV +R++  R D
Sbjct:    4 LEYNGSAIVAMVGKDCVAIASDTRYGVQAQTVATDMEKIFKMHDRLYVGLSGLATDMQTVRNTLQFQLKLYKLREERE-IEPHVFANLVSTMLYSKRFGPYFVEPVVAGIDKKGKPFICAMDLIGAPVFAEDFVVSGTASEELYGTCESLYTPNLGPEELFETVSQALLAAVDRDCLSGWGATVHIITKDGVTSRKLKCRQD 204          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.500e-63
Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            +E NG + +AMAGK CV +A D R G++ Q V+ D K+V K+N RL CG  GL +DV T+ Q L F   L  L EE ++ +P   + LLSTLLY +R  P+FVEPIVAGLD +G+P+L G D++GAPV  DDFVV+GT   ++YG CE  +K  MEP++L +  ++ LLA++DRD LSG+G VVH++T  GV +RE+  R D
Sbjct:    4 LEYNGAAIIAMAGKDCVGIAADTRLGVQAQTVATDFKKVFKMNDRLFCGLAGLASDVQTLDQLLKFRQNLYELREEREM-TPEVFSNLLSTLLYEKRFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S3K6H9_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6H9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.990e-63
Identity = 102/202 (50.50%), Postives = 144/202 (71.29%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            +E NG + +AMAGK CVA+A D RFGL  Q V+ D ++V K++ ++  G  GL TDV T+   L F++AL  L EE ++  P A A LLS +LY +R  P+FVEP+VAGL   G P+LCG D++GAPV  +DFVV+GT A +L G CE+FF+  MEP++L +  S+CLLA++DRD LSG+GA+VH++T +GV ++ +  RMD
Sbjct:    4 LEHNGAAIVAMAGKNCVAIASDTRFGLRQQTVTCDFEKVFKMSDKIYVGLAGLATDVQTLRATLKFKLALYKLREERKM-KPEAFAALLSHMLYEKRFGPYFVEPLVAGLKEDGTPFLCGMDLIGAPVFTNDFVVSGTCASNLNGLCESFFRPDMEPDDLFETISQCLLASVDRDALSGWGAIVHVITPQGVTSKRLKARMD 204          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: M1V7D3_CYAM1 (20S core proteasome subunit beta 3 n=2 Tax=cellular organisms TaxID=131567 RepID=M1V7D3_CYAM1)

HSP 1 Score: 208 bits (530), Expect = 5.490e-63
Identity = 99/208 (47.60%), Postives = 143/208 (68.75%), Query Frame = 3
Query:  258 LASSNPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            ++  NP+  NGG+  A  G  CVA+A DRRFG     ++ DA R+ +V+ RL+ G TGL TD +T+ + +     L  LGE+ +   PA ++ L+S LLY RR +P+FVEP++ GL    +PY C  D+LG P+E D+FV AGT A+SLYGT E F++ G++PE+L +  ++C+LAALDRDCLSG+GAVV+++ S+GV  RE+  RMD
Sbjct:    1 MSQVNPLHYNGGAVFAATGNQCVAIAADRRFGQAQLTLACDANRLFRVHDRLVLGLTGLATDCLTLAERVRMRTNLYRLGEKREP-KPATISALVSALLYERRFAPYFVEPVIVGLSGDNKPYCCSMDLLGTPMETDEFVAAGTCAESLYGTGETFWRPGLDPEDLFEVTAQCMLAALDRDCLSGWGAVVYVLHSEGVTVRELKARMD 207          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A0H5R549_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R549_9EUKA)

HSP 1 Score: 207 bits (528), Expect = 9.970e-63
Identity = 97/202 (48.02%), Postives = 139/202 (68.81%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            ME NG + +AM GK CVA+A D R+G++ Q ++ D ++V K++ RL  G +GL TD+ TV   L F + +  L EE + I P   + +LST+LY +R  P+FVEP+VAG+D  G+P++C  D+LGA V  DDFVV+GT+ + LYGTCE+ +   + P+EL +  S+ LLAA DRDCLSG+GAVVH++T   + TR + TR D
Sbjct:    4 MEYNGSAVVAMLGKDCVAIASDTRYGVQAQTIATDMQKVFKMHDRLYVGLSGLSTDMQTVRNRLEFRLKMYKLREERE-IEPKVFSNMLSTMLYEKRFGPYFVEPVVAGIDKAGKPFICAMDLLGAAVYADDFVVSGTTGEELYGTCESLYSPNLSPDELFETVSQALLAACDRDCLSGWGAVVHILTKDNITTRVLKTRQD 204          
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S1FMY7_9STRA (Proteasome subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMY7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.990e-62
Identity = 103/202 (50.99%), Postives = 139/202 (68.81%), Query Frame = 3
Query:  276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
            +E NGG+ +AMAGK CVA+A D R G+  Q V+ D K+V K+N+RL  G  GL TDV T+ Q L F   L  L EE ++  P   + LLST+LY +R  P+F EP+VAGLD + +P+L G D++GA V  DDFVV GT  ++LYG CE  +K  + PEEL +  S+CLL+A+DRD +SG+GAVVH++T KGV +RE+  R D
Sbjct:    4 LEYNGGAIIAMAGKDCVAIASDTRLGINMQTVATDFKKVFKMNERLYVGLAGLATDVQTLDQLLRFRSELYELREERKM-KPKTFSNLLSTMLYEKRFGPYFCEPVVAGLDEKNKPFLSGMDLIGATVIADDFVVTGTCTENLYGMCETLYKPDLGPEELFETISQCLLSAVDRDAMSGWGAVVHVITPKGVTSRELKGRQD 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS2_ECTSI3.660e-12083.73Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A835YVV6_9STRA1.460e-6755.50Proteasome beta subunit n=1 Tax=Tribonema minus Ta... [more]
M2W804_GALSU1.840e-6652.26Proteasome subunit beta n=1 Tax=Galdieria sulphura... [more]
A0A2V3J6M2_9FLOR1.560e-6449.01Proteasome subunit beta n=1 Tax=Gracilariopsis cho... [more]
A0A3P3Y3V5_PLABS2.210e-6448.02Proteasome subunit beta n=2 Tax=Plasmodiophora bra... [more]
A0A7S2XNS4_9STRA2.500e-6350.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3K6H9_9STRA4.990e-6350.50Proteasome subunit beta n=1 Tax=Aureoumbra lagunen... [more]
M1V7D3_CYAM15.490e-6347.6020S core proteasome subunit beta 3 n=2 Tax=cellula... [more]
A0A0H5R549_9EUKA9.970e-6348.02Proteasome subunit beta n=1 Tax=Spongospora subter... [more]
A0A7S1FMY7_9STRA1.990e-6250.99Proteasome subunit beta n=2 Tax=Corethron hystrix ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2954contigH-paniculata_contig2954:8310..11215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.3
Seed ortholog evalue1.3e-95
Seed eggNOG ortholog2880.D8LMS2
Preferred namePBC1
KEGG koko:K02735,ko:K03660
KEGG Pathwayko03050,ko03410,map03050,map03410
KEGG ModuleM00337,M00340
Hectar predicted targeting categorymitochondrion
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010950,GO:0010952,GO:0012505,GO:0016020,GO:0016504,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031597,GO:0031984,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0042175,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0180@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-02_003440.1
EC3.4.25.1,4.2.99.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400
Exons3
Model size1049
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2954.8034.1prot_H-paniculata_contig2954.8034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2954 8475..11153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.2443166-UTR-H-paniculata_contig2954:8309..84741622929902.2443166-UTR-H-paniculata_contig2954:8309..8474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 8310..8474 -
1691481062.0757766-UTR-H-paniculata_contig2954:8309..84741691481062.0757766-UTR-H-paniculata_contig2954:8309..8474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 8310..8474 -
1622929902.3097365-UTR-H-paniculata_contig2954:11153..112151622929902.3097365-UTR-H-paniculata_contig2954:11153..11215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 11154..11215 -
1691481062.1210876-UTR-H-paniculata_contig2954:11153..112151691481062.1210876-UTR-H-paniculata_contig2954:11153..11215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2954 11154..11215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.2597535-CDS-H-paniculata_contig2954:8474..87201622929902.2597535-CDS-H-paniculata_contig2954:8474..8720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 8475..8720 -
1691481062.0922143-CDS-H-paniculata_contig2954:8474..87201691481062.0922143-CDS-H-paniculata_contig2954:8474..8720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 8475..8720 -
1622929902.2766807-CDS-H-paniculata_contig2954:9477..97171622929902.2766807-CDS-H-paniculata_contig2954:9477..9717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 9478..9717 -
1691481062.1025167-CDS-H-paniculata_contig2954:9477..97171691481062.1025167-CDS-H-paniculata_contig2954:9477..9717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 9478..9717 -
1622929902.2921653-CDS-H-paniculata_contig2954:10817..111531622929902.2921653-CDS-H-paniculata_contig2954:10817..11153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 10818..11153 -
1691481062.1108842-CDS-H-paniculata_contig2954:10817..111531691481062.1108842-CDS-H-paniculata_contig2954:10817..11153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2954 10818..11153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2954.8034.1

>prot_H-paniculata_contig2954.8034.1 ID=prot_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp
MQQLVTPRGFQSRRHRIILCQRNLRRRRRNRSVSQYVGCDFSCLLWWGTR
RLVLALLTLMMSITVLASSNPMELNGGSCMAMAGKGCVALAVDRRFGLEG
QLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQV
ISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVE
VDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSG
YGAVVHLVTSKGVETREVATRMD*
back to top

mRNA from alignment at H-paniculata_contig2954:8310..11215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2954.8034.1 ID=mRNA_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2906bp|location=Sequence derived from alignment at H-paniculata_contig2954:8310..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGACCCAATCCAAACGTGGTATGGTATCGACCTGTCCATCCCATTAG CCTTCCTTAAGCATGCAACAATTGGTTACACCACGTGGCTTCCAATCACG CCGACATCGCATCATACTGTGTCAGAGGAATCTGCGCCGTAGACGAAGAA ATCGTTCTGTTTCTCAATATGTCGGTTGCGACTTCTCTTGTCTGCTCTGG TGGGGGACTCGACGACTCGTCCTAGCACTGCTGACCTTAATGATGTCGAT AACAGTTTTGGCTTCATCTAACCCGATGGAGCTGAACGGAGGATCTTGTA TGGCTATGGCGGGAAAAGGCTGTGTGGCGCTTGCAGTGGACCGACGATTC GGGTTGGAAGGGCAGCTTGTGTCACAGGATGCAAAGCGGGTGTTGAAGGT ATGTCGTGAACTTCGGGGCGATTCCACCATACAACTGCCCATCAACGGCA TGAGTTGTAGCCCTTTCTCCCCTGTTGAGCAACCCGCCGCATGCACTCTA GTGGCCTGCGCTTTCGATGGTAGGGTGTGGCATATAATCGAGTGGCCTGT GGATCGTTCTTGTTTCAGACTATATCCATCTGGGATGTGTGGTAGGCTGA GGGGTTTTGTAACTACTGACATTGTAGCAAGGTCGTTTCTTCGCGAACTG GACTGCTCATGAGGCATGTAGCCAGCAGGTGGCGTCGGGCGAGTTGCTGC CATCAGTTGTACCGCCTTGCTGCCATACATGTTATGTTTAGCATCATGGC TGGCTTGGTCTCGGGGTGTGGTGAACAACGCTGGTGATGATATGTTAAGT CACAGAGTAAGCAAAAGACACACATGCAACACAACACACAGTCCAGAGCA GACAGTGTTGACTGTTTGTGCTCCGAAAACGACTTCAAATCATTCAGCTC TACAGGTAAAGCTCAATGACGGAGGCTAGAGCCGGATCGGTGCAAAGTTG AAAGATTCGAATTCGGTGTCTGGCACATGTAGCTTGAGCACGATGAGTTG CAGTCAGCCATGCACAAGCTAGGCCTAGCCCTTGACTGCATGCTTCAACG CCGCAGGCCGTTCAAACGCTGAAACCTGGAAGGCCATTCTTTCCACGATC TAATAACCCCTTGAAAAAGCGCCAATTGACCATCATTTCTGTCACTGACA GTTTGTTTCATCTAACTGAACAGGGGAGCAAGCATTTTTCAGTTTTGACA CCCATCTTGAACGGTTTTCTCTTTTTATATCCCTCCATAGGCAGACACGC CACAGATGGCCTAATATCGATTCCTCGGACTCGCGGTCAGTGGCCGCGGG AATAGAAGCGAACTGATTTTGTAGGGGAACAGGCGAGCTATAGAAATGAC CGCAACCCTTGCCACTCTATAGGTAAAGGCCGATCGACCCGACCTCTGAG ACTCACCGCTCCTCAAGACGAACTGTGTCCGCAAGCGTCGAACAACCCAA ACACAACGGTTACAAACTACCACTCCTTCCCTCCCATCCACCAACTAGGT CAACAAGCGATTGTTGTGCGGATTCACCGGCCTGTGGACGGATGTGATGA CCGTAATGCAAGACCTTTCATTCGAGGTGGCGCTGAAAGGCCTGGGGGAA GAGAATCAAGTAATATCGCCCGCAGCTCTTGCGGGCCTCTTGTCCACTTT GCTCTATGCTCGGCGGTCGAGCCCGTTTTTCGTAGAGCCGATCGTCGCAG GCTTGGACGCGCGGGGACAACCATATTTATGTGGACAGGTAAATGGCGGG GGTAAATACATCATATGTTCACAGATATTTATCACGATGTTCTTGCCTTT CATGGCAGGACGAGCCAGGCGGCCAGGCCCTGGTCGGGGGATGTACTCTT GTGTTCTCATGATGATGCATGCCGTAATGATCGCTGTTGACCGTAATTGA AAATTACAGGTTACATCTAGAGAAACAGGTGACAGCACTTTTTGGCGTGA TTGCCAACAAGTCCGATCGATCCAAGAATAGGTCGTAAAAACTTGACCTG TTCATTGAATCAGTCATCGCTTTACGCGTGTTGTTATTTCATGTCGAGAA AGCGGTGTGAATCGGCAACGTACTTGTGCTTGCTTATCCATCGTCGATCG CTTTCATGCCAACAATGCAAGGACGCAGGGCCAATGGTCTAATGACTGAG CCATGTTGATAATAAACGACCCCTTCCCCCCGTGATGTTCATAGCTATAC TGTTGTTCATTTGTAGATGAACTAGTTTAGTCAGGTGTGGTTGAACTTTC GCTTCGTGAGCCCTGAAGCTCAACCACATAACTATAAGCACTTCCATCCA TGGCGTGAAATGTATCCGAGTCGATCATTATGTTGACGTTTGCCAACGAC GCTACAAGTTTATTGGGATACTTCTTTCTCAAGCGAATAATTTTTCCAAA CAACGCCATTGTAACTCCCCCTCCCCTTCCCCCCCCCTTCACCCTGCCGG CGGGCTGGCTGGCCTGCATTTCTGCACCTGTCCCAACCGTGGTAGGATAT CTTGGGAGCTCCTGTAGAAGTGGACGATTTTGTAGTAGCGGGGACATCAG CGCAGTCACTGTACGGTACGTGCGAGGCGTTTTTCAAGGCGGGGATGGAG CCGGAGGAATTGGTTCAGGCGGCATCGCGGTGCCTCTTGGCTGCCTTGGA TAGGGATTGCCTGAGCGGATACGGGGCGGTGGTGCATCTCGTTACGTCAA AAGGAGTGGAGACGCGCGAGGTGGCAACGCGTATGGACTAATTTATCCCA AATCTACGGAGTATTCACGGGGAATTCATGTGCCCGATCATAACTTTTTT ACACTTGATTACTTCGAGAAGCGAGACCTTGCACTGTCGAAAGGGCGAGT CAATCAATCTATATATACCATATTGGCTTTTGGTCATTTTGGAGCATGAC TATACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2954:8310..11215-

>mRNA_H-paniculata_contig2954.8034.1 ID=mRNA_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig2954:8310..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAATTGGTTACACCACGTGGCTTCCAATCACGCCGACATCGCAT
CATACTGTGTCAGAGGAATCTGCGCCGTAGACGAAGAAATCGTTCTGTTT
CTCAATATGTCGGTTGCGACTTCTCTTGTCTGCTCTGGTGGGGGACTCGA
CGACTCGTCCTAGCACTGCTGACCTTAATGATGTCGATAACAGTTTTGGC
TTCATCTAACCCGATGGAGCTGAACGGAGGATCTTGTATGGCTATGGCGG
GAAAAGGCTGTGTGGCGCTTGCAGTGGACCGACGATTCGGGTTGGAAGGG
CAGCTTGTGTCACAGGATGCAAAGCGGGTGTTGAAGATGCAACAATTGGT
TACACCACGTGGCTTCCAATCACGCCGACATCGCATCATACTGTGTCAGA
GGAATCTGCGCCGTAGACGAAGAAATCGTTCTGTTTCTCAATATGTCGGT
TGCGACTTCTCTTGTCTGCTCTGGTGGGGGACTCGACGACTCGTCCTAGC
ACTGCTGACCTTAATGATGTCGATAACAGTTTTGGCTTCATCTAACCCGA
TGGAGCTGAACGGAGGATCTTGTATGGCTATGGCGGGAAAAGGCTGTGTG
GCGCTTGCAGTGGACCGACGATTCGGGTTGGAAGGGCAGCTTGTGTCACA
GGATGCAAAGCGGGTGTTGAAGGTCAACAAGCGATTGTTGTGCGGATTCA
CCGGCCTGTGGACGGATGTGATGACCGTAATGCAAGACCTTTCATTCGAG
GTGGCGCTGAAAGGCCTGGGGGAAGAGAATCAAGTAATATCGCCCGCAGC
TCTTGCGGGCCTCTTGTCCACTTTGCTCTATGCTCGGCGGTCGAGCCCGT
TTTTCGTAGAGCCGATCGTCGCAGGCTTGGACGCGCGGGGACAACCATAT
TTATGTGGACAGGTCAACAAGCGATTGTTGTGCGGATTCACCGGCCTGTG
GACGGATGTGATGACCGTAATGCAAGACCTTTCATTCGAGGTGGCGCTGA
AAGGCCTGGGGGAAGAGAATCAAGTAATATCGCCCGCAGCTCTTGCGGGC
CTCTTGTCCACTTTGCTCTATGCTCGGCGGTCGAGCCCGTTTTTCGTAGA
GCCGATCGTCGCAGGCTTGGACGCGCGGGGACAACCATATTTATGTGGAC
AGGATATCTTGGGAGCTCCTGTAGAAGTGGACGATTTTGTAGTAGCGGGG
ACATCAGCGCAGTCACTGTACGGTACGTGCGAGGCGTTTTTCAAGGCGGG
GATGGAGCCGGAGGAATTGGTTCAGGCGGCATCGCGGTGCCTCTTGGCTG
CCTTGGATAGGGATTGCCTGAGCGGATACGGGGCGGTGGTGCATCTCGTT
ACGTCAAAAGGAGTGGAGACGCGCGAGGTGGCAACGCGTATGGACTAAGA
TATCTTGGGAGCTCCTGTAGAAGTGGACGATTTTGTAGTAGCGGGGACAT
CAGCGCAGTCACTGTACGGTACGTGCGAGGCGTTTTTCAAGGCGGGGATG
GAGCCGGAGGAATTGGTTCAGGCGGCATCGCGGTGCCTCTTGGCTGCCTT
GGATAGGGATTGCCTGAGCGGATACGGGGCGGTGGTGCATCTCGTTACGT
CAAAAGGAGTGGAGACGCGCGAGGTGGCAACGCGTATGGACTAA
back to top