mRNA_H-paniculata_contig2954.8034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: D8LMS2_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS2_ECTSI) HSP 1 Score: 354 bits (909), Expect = 3.660e-120 Identity = 175/209 (83.73%), Postives = 194/209 (92.82%), Query Frame = 3
Query: 255 VLASSNPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
VLASSNP+ELNGGSC+AMAGKGCVALAVDRRFGLEGQLVS +AKRVLKVN +LLCGFTGLWTDV+TVMQDLS EVALK L E ++ I+PAALAGLLSTLLY+RR SP+FVEPIVAGLD RG+PYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFF+ GME EEL + ASRCLL+AL+RDCLSGYGAVVHL+T +G+ETRE+ TRMD
Sbjct: 12 VLASSNPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A835YVV6_9STRA (Proteasome beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV6_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.460e-67 Identity = 111/200 (55.50%), Postives = 147/200 (73.50%), Query Frame = 3
Query: 270 NPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDD-FVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREV 866
+P+ELNGGSC+ MAG+ C+A+AVD+RFG +LVS +A+RVLK++ RLLC FTGL TDV T+MQDL+ A + E + + PAA A LLS++LYARR SP+F E IVAGL + ++ D+LGA +D F V GTSA+SLYG CEAF++ M PEEL A CL+AAL+RDCLSG+G VVHL+T +G+ +RE+
Sbjct: 32 SPLELNGGSCLVMAGRKCLAVAVDKRFGKGNELVSDNARRVLKLHSRLLCAFTGLTTDVQTLMQDLAAAAASYTI-TEGRPLQPAAAAALLSSMLYARRRSPYFCETIVAGLTRSAEAFVRSHDVLGAAGGAEDGFAVMGTSAESLYGLCEAFYRPDMTPEELADTAEHCLVAALERDCLSGHGVVVHLLTEQGISSREL 230
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: M2W804_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W804_GALSU) HSP 1 Score: 217 bits (553), Expect = 1.840e-66 Identity = 104/199 (52.26%), Postives = 142/199 (71.36%), Query Frame = 3
Query: 285 NGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
NGG +AMAG CVA+A DRRFG++ + D R+ K+N RL+ G TGL TDV T+ + L L EE + I PA+ A ++++ LY+RR SP+FVEP+VAGL +G+PYLC QD+LGAP+ +DFVV+GT A+SLYGT E F+K + P EL + S+ LLAA+DRDCLSG+GA+VH++T G+ET+ + RMD
Sbjct: 9 NGGCVLAMAGDNCVAIAADRRFGVQQTTIGTDTTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLREERE-IKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQDLLGAPLFAEDFVVSGTCAESLYGTSETFWKPNLSPAELFEVTSQSLLAAVDRDCLSGWGAIVHMITLNGIETKVLKARMD 206
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A2V3J6M2_9FLOR (Proteasome subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6M2_9FLOR) HSP 1 Score: 212 bits (540), Expect = 1.560e-64 Identity = 99/202 (49.01%), Postives = 145/202 (71.78%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
+E NGG +AMAGK CVA+A D+R G++ V+ DA R+ +++ +L G TGL TD+ T+ Q F++ L + EN+++ P A L+S+ LY++R +P+F EP++AGLD +PY+C D+LG E +FVVAGT A+SL+GTCE F+K +EP+EL + S+ LLAALDRDC+SG+GAVVH++T GV+T+E+ RMD
Sbjct: 4 LEYNGGCVLAMAGKECVAIASDKRLGVQLTTVAMDANRIFRMHDKLYLGLTGLMTDIQTLDQLFRFKLELYAM-RENRLMKPKTFASLVSSTLYSKRFAPYFSEPVIAGLDKDNKPYICSMDLLGCVAEETEFVVAGTCAESLFGTCETFYKKDLEPDELFETVSQALLAALDRDCISGWGAVVHIITKDGVQTKELDGRMD 204
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A3P3Y3V5_PLABS (Proteasome subunit beta n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3V5_PLABS) HSP 1 Score: 212 bits (539), Expect = 2.210e-64 Identity = 97/202 (48.02%), Postives = 145/202 (71.78%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
+E NG + +AM GK CVA+A D R+G++ Q V+ D +++ K++ RL G +GL TD+ TV L F++ L L EE + I P A L+ST+LY++R P+FVEP+VAG+D +G+P++C D++GAPV +DFVV+GT+++ LYGTCE+ + + PEEL + S+ LLAA+DRDCLSG+GA VH++T GV +R++ R D
Sbjct: 4 LEYNGSAIVAMVGKDCVAIASDTRYGVQAQTVATDMEKIFKMHDRLYVGLSGLATDMQTVRNTLQFQLKLYKLREERE-IEPHVFANLVSTMLYSKRFGPYFVEPVVAGIDKKGKPFICAMDLIGAPVFAEDFVVSGTASEELYGTCESLYTPNLGPEELFETVSQALLAAVDRDCLSGWGATVHIITKDGVTSRKLKCRQD 204
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA) HSP 1 Score: 209 bits (532), Expect = 2.500e-63 Identity = 102/202 (50.50%), Postives = 140/202 (69.31%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
+E NG + +AMAGK CV +A D R G++ Q V+ D K+V K+N RL CG GL +DV T+ Q L F L L EE ++ +P + LLSTLLY +R P+FVEPIVAGLD +G+P+L G D++GAPV DDFVV+GT ++YG CE +K MEP++L + ++ LLA++DRD LSG+G VVH++T GV +RE+ R D
Sbjct: 4 LEYNGAAIIAMAGKDCVGIAADTRLGVQAQTVATDFKKVFKMNDRLFCGLAGLASDVQTLDQLLKFRQNLYELREEREM-TPEVFSNLLSTLLYEKRFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S3K6H9_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6H9_9STRA) HSP 1 Score: 208 bits (530), Expect = 4.990e-63 Identity = 102/202 (50.50%), Postives = 144/202 (71.29%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
+E NG + +AMAGK CVA+A D RFGL Q V+ D ++V K++ ++ G GL TDV T+ L F++AL L EE ++ P A A LLS +LY +R P+FVEP+VAGL G P+LCG D++GAPV +DFVV+GT A +L G CE+FF+ MEP++L + S+CLLA++DRD LSG+GA+VH++T +GV ++ + RMD
Sbjct: 4 LEHNGAAIVAMAGKNCVAIASDTRFGLRQQTVTCDFEKVFKMSDKIYVGLAGLATDVQTLRATLKFKLALYKLREERKM-KPEAFAALLSHMLYEKRFGPYFVEPLVAGLKEDGTPFLCGMDLIGAPVFTNDFVVSGTCASNLNGLCESFFRPDMEPDDLFETISQCLLASVDRDALSGWGAIVHVITPQGVTSKRLKARMD 204
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: M1V7D3_CYAM1 (20S core proteasome subunit beta 3 n=2 Tax=cellular organisms TaxID=131567 RepID=M1V7D3_CYAM1) HSP 1 Score: 208 bits (530), Expect = 5.490e-63 Identity = 99/208 (47.60%), Postives = 143/208 (68.75%), Query Frame = 3
Query: 258 LASSNPMELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
++ NP+ NGG+ A G CVA+A DRRFG ++ DA R+ +V+ RL+ G TGL TD +T+ + + L LGE+ + PA ++ L+S LLY RR +P+FVEP++ GL +PY C D+LG P+E D+FV AGT A+SLYGT E F++ G++PE+L + ++C+LAALDRDCLSG+GAVV+++ S+GV RE+ RMD
Sbjct: 1 MSQVNPLHYNGGAVFAATGNQCVAIAADRRFGQAQLTLACDANRLFRVHDRLVLGLTGLATDCLTLAERVRMRTNLYRLGEKREP-KPATISALVSALLYERRFAPYFVEPVIVGLSGDNKPYCCSMDLLGTPMETDEFVAAGTCAESLYGTGETFWRPGLDPEDLFEVTAQCMLAALDRDCLSGWGAVVYVLHSEGVTVRELKARMD 207
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A0H5R549_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R549_9EUKA) HSP 1 Score: 207 bits (528), Expect = 9.970e-63 Identity = 97/202 (48.02%), Postives = 139/202 (68.81%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
ME NG + +AM GK CVA+A D R+G++ Q ++ D ++V K++ RL G +GL TD+ TV L F + + L EE + I P + +LST+LY +R P+FVEP+VAG+D G+P++C D+LGA V DDFVV+GT+ + LYGTCE+ + + P+EL + S+ LLAA DRDCLSG+GAVVH++T + TR + TR D
Sbjct: 4 MEYNGSAVVAMLGKDCVAIASDTRYGVQAQTIATDMQKVFKMHDRLYVGLSGLSTDMQTVRNRLEFRLKMYKLREERE-IEPKVFSNMLSTMLYEKRFGPYFVEPVVAGIDKAGKPFICAMDLLGAAVYADDFVVSGTTGEELYGTCESLYSPNLSPDELFETVSQALLAACDRDCLSGWGAVVHILTKDNITTRVLKTRQD 204
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Match: A0A7S1FMY7_9STRA (Proteasome subunit beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMY7_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.990e-62 Identity = 103/202 (50.99%), Postives = 139/202 (68.81%), Query Frame = 3
Query: 276 MELNGGSCMAMAGKGCVALAVDRRFGLEGQLVSQDAKRVLKVNKRLLCGFTGLWTDVMTVMQDLSFEVALKGLGEENQVISPAALAGLLSTLLYARRSSPFFVEPIVAGLDARGQPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFKAGMEPEELVQAASRCLLAALDRDCLSGYGAVVHLVTSKGVETREVATRMD 881
+E NGG+ +AMAGK CVA+A D R G+ Q V+ D K+V K+N+RL G GL TDV T+ Q L F L L EE ++ P + LLST+LY +R P+F EP+VAGLD + +P+L G D++GA V DDFVV GT ++LYG CE +K + PEEL + S+CLL+A+DRD +SG+GAVVH++T KGV +RE+ R D
Sbjct: 4 LEYNGGAIIAMAGKDCVAIASDTRLGINMQTVATDFKKVFKMNERLYVGLAGLATDVQTLDQLLRFRSELYELREERKM-KPKTFSNLLSTMLYEKRFGPYFCEPVVAGLDEKNKPFLSGMDLIGATVIADDFVVTGTCTENLYGMCETLYKPDLGPEELFETISQCLLSAVDRDAMSGWGAVVHVITPKGVTSRELKGRQD 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2954.8034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2954.8034.1 >prot_H-paniculata_contig2954.8034.1 ID=prot_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=274bp MQQLVTPRGFQSRRHRIILCQRNLRRRRRNRSVSQYVGCDFSCLLWWGTRback to top mRNA from alignment at H-paniculata_contig2954:8310..11215- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2954.8034.1 ID=mRNA_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2906bp|location=Sequence derived from alignment at H-paniculata_contig2954:8310..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2954:8310..11215- >mRNA_H-paniculata_contig2954.8034.1 ID=mRNA_H-paniculata_contig2954.8034.1|Name=mRNA_H-paniculata_contig2954.8034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at H-paniculata_contig2954:8310..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |