mRNA_H-paniculata_contig2953.8032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A6H5L8J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8J4_9PHAE) HSP 1 Score: 319 bits (817), Expect = 1.130e-88 Identity = 239/581 (41.14%), Postives = 293/581 (50.43%), Query Frame = 2
Query: 1586 YARGTCMTMCPQSEMLGRQAEAALSVFEATEDTA--PLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIA-SAYVFVEDRLRAVRQDLTVQGLG--SAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMFFQARGLGLPASC------PVAGEDEYLSLQAVHALATAVSNHTD---GKHPLAEAAGGKGVGSVFATTVSKL--------------CAFSQPPVGVLGKGFAQRPAGVTLPE--TFGSAYPKMAMALAFLGAVGEGNWTEFNRLLGR---RGGVEAEQEG--VLVGGESTESSFAIRLRCLSHGMLLHVRAHALRVINKAFGKGERMPL----------ADVRRTLQMRTEEHAEGLCRALSLPIEPDGH-------------------VVFKSVPAVWNNKVARQAGFLSPPGSTVEHVTLCS-REDEWVGIEPGWLGVGFIAGGGRGTAEEGG----GTCQACAGFGCQWCEGAL------------EASDGLWGATLSP 3085
YARGTCM+MCP+SE R+AE LS FEATE TA + FR+R ADP K VKKYRRSAAGR M QLR +G V +A AY+FVEDRLRAVRQDLTVQGL +AEVL+ ANFY+++G GVFSSLA++FFQ LP+ G DEYL LQAVHALATA+SN G L +AAG +GVG +F TTVSKL C G+ G LP +F +A+PKMA A+ L V +GNW+EF RLLG + +A +EG +LVGGE S FA+RLRC+ HGMLL VRAHALR +NKA+GK E++PL ADV R L+ R EEHAEG+C +LSLPIE H VVFK VPAVW ++ A++ G+ G+ C+ RED+WVG+ L A +A+ TC ACAGFGC WC+ + E +GLW L P
Sbjct: 321 YARGTCMSMCPESERREREAEGGLSSFEATEATAGASVSFRQRIADPKKAVKKYRRSAAGRDMHR-SQLRSRPKQDEFPL-------------------------------RGSECRVELLALEAYMFVEDRLRAVRQDLTVQGLALEGTTGAAEVLQTTANFYILAGL--------------------GVFSSLAELFFQGARAELPSQILNHHQHHHLGVDEYLCLQAVHALATAISNRNSSSGGGTQLGDAAGEQGVGRLFTTTVSKLSSGSSFSLLSPTNPCDGEGEDAGISSTAVTNPVEGRILPAPVSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGDFTPKPNDDAIREGKTLLVGGEHASSPFAVRLRCVCHGMLLPVRAHALRAMNKAYGKSEKVPLVSGSLFGSGQADVARILRARDEEHAEGICSSLSLPIEEIKHGDGSNTGVHQTDAKDQPKAVVFKCVPAVWKSETAKKTGYFC--GTNSGDARRCTLREDDWVGLTRA-LAASASAKNRSSSADSNKTAATATCDACAGFGCSWCDNGIVKAEDGISRLAKEEEEGLWQVALCP 846
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: D7FRI1_ECTSI (SAC3_GANP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI1_ECTSI) HSP 1 Score: 217 bits (553), Expect = 2.210e-58 Identity = 150/349 (42.98%), Postives = 185/349 (53.01%), Query Frame = 2
Query: 2213 GEDEYLSLQAVHALATAVSN---HTDGKHPLAEAAGGKGVGSVFATTVSKLC---AFSQPPVGVLGKGFAQRPAGVT--------------LPETFGSAYPKMAMALAFLGAVGEGNWTEFNRLLGRRGGV--EAEQEG--VLVGGESTESSFAIRLRCLSHGMLLHVRAHALRVINKAFGKGERMPLADVRRTLQMRTEEHAEGLCRALSLPIEP---------DGH----------VVFKSVPAVWNNKVARQAGFLSPPGSTVEHVTLCSREDEWVGIEPGWLGVGFI---AGGGRGTAEEGGGTCQACAGFGCQWCEGAL------------EASDGLWGATLSP 3085
G DEYL LQAVHALATA+SN + G L +AAG +GVG +F TTVSKLC +F PP G R AG+ P +F +A+PKMA A+ L V +GNW+EF RLLG +A +EG +LVGGE+ S FA+RLRC+ H MLL VRAHALR +NKA+GK E++PLADV R L+ R EEHAEG+CRALSLPIE GH VVFK VPAVW ++ A++ F S + RED+WVG+ + ACAGFGC WCE + E +GLW L P
Sbjct: 38 GGDEYLCLQAVHALATAISNGNGSSGGDPQLGDAAGEQGVGRLFTTTVSKLCGGSSFYLPPPSNQSDGEG-RDAGIASTAVTYPVEGRILPAPMSFRTAFPKMATAVRILAVVRDGNWSEFFRLLGNFTPKPNDAIREGTKLLVGGENASSPFAVRLRCVCHVMLLPVRAHALRAMNKAYGKSEKVPLADVARMLRARDEEHAEGICRALSLPIEEIKHGDGSNTSGHQTDAKDQPQAVVFKCVPAVWKSETAKKTSFFCGTNSGNARGSCTLREDDWVGLTRALAASASDKNRSXXXXXXXXXXXXXXTACAGFGCSWCENGIVKAEEGISRLAQEEEEGLWQVALCP 385
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: UPI001C91606B (SAC3 domain-containing protein 1-like isoform X1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91606B) HSP 1 Score: 102 bits (253), Expect = 2.480e-19 Identity = 66/181 (36.46%), Postives = 92/181 (50.83%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQ 2137
GTC+ CP+SE+ RQ E + + EA E T RR+AD + +K + RSAAGRP+ LRP +VL T Y+ +V A E + Y F DRLRAVRQDLTVQ + ++ VL+ A F++ + Y D P D+FD+H++TR+LQ
Sbjct: 8 GTCLMKCPESEVKWRQRERLIHLLEADEATVSGPAGRRRADRDRMIKSFERSAAGRPVSERRCLRPPAVLLETVGYVFHSVLPRA--------------------------ESVGWPAVYAFCVDRLRAVRQDLTVQQ-AAGPQALAVLRRCALFHLYADYRSRDCPLDVFDRHINTRQLQ 161
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: K7GAX4_PELSI (SAC3_GANP domain-containing protein n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7GAX4_PELSI) HSP 1 Score: 101 bits (252), Expect = 7.210e-19 Identity = 68/187 (36.36%), Postives = 93/187 (49.73%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSL 2155
GTC MCPQSE+ R+ + L E E T R+ DP + VK+Y R AAG+ + P +LRP VL T +YL+ V + A ++P A Y FV DRLRAVRQD T+Q L A +L+ + + + +GY + +PP FD HLH+ +LQ FS L
Sbjct: 71 GTCPRMCPQSELTQRERQGRLHRLELQEGT-------RQGDPDRVVKEYSRPAAGKELPRPQELRPAPVLLTTVRYLLGQVTSRA--------------------------DLPP-AEVYAFVSDRLRAVRQDATLQRL-QGAPCVALLERSLGYLLHAGYRLCQEPPAHFDPHLHSTQLQECFSWL 222
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A6I8PU88_XENTR (SAC3 domain containing 1 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8PU88_XENTR) HSP 1 Score: 94.7 bits (234), Expect = 1.020e-16 Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKA----DPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMF 2167
G C MCP+ E R+ + L FE T+ RR KA DP+KTVK+Y R AAG+ + SP +RP +VL T +YL+ V+ +S NE S +++ AY FV DRLRAVRQD+TVQ + A VL+ + F + + YL+ P + +D+ LH +++ F+ L + +
Sbjct: 10 GLCPDMCPRKERQERERQGLLHHFETTDGQRARRGRRGKASMCADPAKTVKEYSRPAAGKELSSPYDIRPPAVLLKTVRYLLMKVW-----DSVNEMDSV------------------NLSEAYCFVFDRLRAVRQDMTVQRVRGQL-GAVVLEESLGFLLCAPYLVRHLPVESYDEVLHATQVRESFAELMECY 180
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A8C0JC14_CHEAB (SAC3 domain containing 1 n=2 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0JC14_CHEAB) HSP 1 Score: 93.6 bits (231), Expect = 1.520e-16 Identity = 63/187 (33.69%), Postives = 91/187 (48.66%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSL 2155
GTC MCP E++ R+ + L E E T R+ DP++ VK+Y R AAG+ + P +LRP VL T +YL+ V + ++P A + F+ DRLRAVRQD T+Q L A +L+ + + + +GY + +PP FD HLH +LQ FS L
Sbjct: 10 GTCPGMCPLGELVQRERQGRLHRLELREGT-------RQGDPARVVKEYSRPAAGKELPRPQELRPAPVLLATVRYLLGQVAPQV--------------------------DLPP-AEVHAFISDRLRAVRQDATLQQL-QGAPCVALLERSLGYLLHAGYQLCQEPPARFDPHLHRTQLQECFSWL 161
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A224Z0L2_9ACAR (SAC3 domain-containing protein 1 n=1 Tax=Rhipicephalus zambeziensis TaxID=60191 RepID=A0A224Z0L2_9ACAR) HSP 1 Score: 92.8 bits (229), Expect = 1.740e-16 Identity = 67/194 (34.54%), Postives = 97/194 (50.00%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMFFQA 2176
GTC MCP E R+ E L FE + T R KAD +K +K++ RSAAG+ + D+LRP VL T+ YL++ V A +C GD S Y FV DRL AVRQD+T+QGL + + E+L+ A FYV + + ++ + FD H++ + LQ L ++ Q+
Sbjct: 35 GTCQDMCPPRERQWREKERLLHPFEIADGTES--DARPKADRNKAIKQFSRSAAGQREATSDELRPPQVLLKTTAYLMR-VIAPSCS--------------------GD-----SWNDTYHFVWDRLWAVRQDMTIQGL-NGGECIEILEQAVRFYVYAAFRCFEEDMNAFDPHINNQHLQECLKRLLVLYQQS 199
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A8J6K1P5_ELECQ (SAC3_GANP domain-containing protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K1P5_ELECQ) HSP 1 Score: 93.2 bits (230), Expect = 2.870e-16 Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRK----ADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMFFQARG 2182
G C+ MCP+ E R+++ L E + P R + ADP KTVK+YRR AAG+ + P +LRP + L T YL+ +V++ ++ ++ +A Y FV DRLRAVRQDL VQ + A VL+ + F + + YL+ D P +D+ LH+ +++ FS L + + G
Sbjct: 8 GECLDMCPERERRERESQRRLHPLEVQKVQRPNKGPRGRSHPLADPKKTVKEYRRPAAGKELSYPSELRPPATLAKTVHYLLMDVWSSV-----------------------NYKDLSCLAKTYSFVFDRLRAVRQDLIVQRIMGQG-GALVLERSLGFLLCAPYLVRDLPLADYDEVLHSTQVRECFSELVECYKDGGG 183
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: A0A8C8SUQ2_9SAUR (SAC3 domain containing 1 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8SUQ2_9SAUR) HSP 1 Score: 92.8 bits (229), Expect = 4.100e-16 Identity = 68/201 (33.83%), Postives = 96/201 (47.76%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMFFQARGLGLPA 2197
GTC MCP +E+ R+ + L E E T ++ DP++ VK+Y R AAG+ + P +LRP VL T +YL+ V +A ++P A + FV DRLRAVRQD T+Q L A A +L+ + + +GY + +PP FD HLH +LQ FS L + G PA
Sbjct: 39 GTCHRMCPPAELAQRERQDRLHQLELREGT-------QQGDPARAVKEYSRPAAGKELPHPQELRPAPVLLATVRYLLGQVVPQA--------------------------DLPP-AEVHAFVSDRLRAVRQDATLQRLRGAPCVA-LLERLLGYMLHAGYWLCREPPARFDPHLHCTQLQECFSWLRRCYRDGCHDGEPA 204
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Match: UPI00189629D2 (germinal-center associated nuclear protein-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189629D2) HSP 1 Score: 92.4 bits (228), Expect = 6.310e-16 Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 2
Query: 1595 GTCMTMCPQSEMLGRQAEAALSVFEATEDTAPLHFRRRKADPSKTVKKYRRSAAGRPMGSPDQLRPLSVLQHTSKYLVKNVFAEACENSNNEATSSFGRTAEGKGDKGDHGEVPSIASAYVFVEDRLRAVRQDLTVQGLGSAAKSAEVLKLAANFYVVSGYLMSDKPPDIFDKHLHTRELQGVFSSLADMFFQ 2173
GTC MCP E R+ E L FE + T + R KAD +K +K++ RSAAG+ + D+LRP VL T+ YL++ + +C GD S Y FV DRL AVRQD+T+QGL + + E+L+ A FYV S + ++ + FD H++++ LQ L + Q
Sbjct: 35 GTCQDMCPPRERQWREKERLLHPFEVADGTE--NDARPKADRNKAIKQFSRSAAGQREATSDELRPPQVLLKTTAYLMR-MIVPSCS--------------------GD-----SWTDTYHFVWDRLWAVRQDMTIQGL-NGGECIEILEQAVRFYVYSAFRCFEEDMNAFDPHINSQHLQECLKRLLVQYQQ 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2953.8032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2953.8032.1 >prot_H-paniculata_contig2953.8032.1 ID=prot_H-paniculata_contig2953.8032.1|Name=mRNA_H-paniculata_contig2953.8032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=910bp MPGDEDSAPAVQVRAGYCISRVDTTSKPSTSSAGVSHANITTIPAVSTHKback to top mRNA from alignment at H-paniculata_contig2953:3097..9773+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2953.8032.1 ID=mRNA_H-paniculata_contig2953.8032.1|Name=mRNA_H-paniculata_contig2953.8032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6677bp|location=Sequence derived from alignment at H-paniculata_contig2953:3097..9773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2953:3097..9773+ >mRNA_H-paniculata_contig2953.8032.1 ID=mRNA_H-paniculata_contig2953.8032.1|Name=mRNA_H-paniculata_contig2953.8032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5460bp|location=Sequence derived from alignment at H-paniculata_contig2953:3097..9773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |