mRNA_H-paniculata_contig29524.8031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29524.8031.1
Unique NamemRNA_H-paniculata_contig29524.8031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.370e-9
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAAA 153
            LGELSGN+F +VVRGV V  A ++ ++      GF NF+GTQR+GSP AA
Sbjct:  446 LGELSGNKFSVVVRGVMVPGAAVKSSLEEACSNGFINFYGTQRVGSPLAA 495          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: W5L4P7_ASTMX (Pseudouridine synthase 7 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=W5L4P7_ASTMX)

HSP 1 Score: 56.6 bits (135), Expect = 5.680e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAAA 153
            +LGEL GN F +V+R +  +   +EHA+ S+R TGF N++G QR G+ A A
Sbjct:  329 KLGELQGNHFTVVLRNISGSDEQVEHAMTSLRATGFINYYGMQRFGTTAVA 379          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A2R5L5V5_9ACAR (TRUD domain-containing protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L5V5_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.450e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
            +LG+LSGNRF IV+RGV  +   IE AVAS+ + GF N+FG QR G+
Sbjct:  206 KLGDLSGNRFGIVLRGVSGSKEDIEDAVASLSQKGFINYFGLQRFGT 252          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A1Z5L0L9_ORNMO (Ceramide kinase (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L0L9_ORNMO)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
            +LG+LSGNRF IV+RG+  +   I+ AVAS+   GF N+FG QR G+
Sbjct:  119 KLGDLSGNRFGIVLRGITGSKEDIQEAVASLSEKGFVNYFGLQRFGT 165          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A0M0JAE1_9EUKA (Pseudouridylate synthase 7-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAE1_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 5.060e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAA 150
            RLG+LSGNRF IV+R      A +E A++++ R GF N+FG QR G  AA
Sbjct:  161 RLGQLSGNRFRIVLRSCHGTAAEVEAALSALARRGFVNYFGMQRFGETAA 210          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A1Z5KW94_ORNMO (tRNA pseudouridine synthase D (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KW94_ORNMO)

HSP 1 Score: 53.9 bits (128), Expect = 5.080e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
            +LG+LSGNRF IV+RG+  +   I+ AVAS+   GF N+FG QR G+
Sbjct:  260 KLGDLSGNRFGIVLRGITGSKEDIQEAVASLSEKGFVNYFGLQRFGT 306          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A293MZ62_ORNER (tRNA pseudouridine synthase D (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MZ62_ORNER)

HSP 1 Score: 53.5 bits (127), Expect = 6.950e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
            +LG+LSGNRF IV+RG+  +   IE AV S+   GF N+FG QR G+
Sbjct:  265 KLGDLSGNRFGIVLRGISGSKEDIEEAVTSLSEKGFINYFGLQRFGT 311          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A7J7JH24_BUGNE (PUS7 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JH24_BUGNE)

HSP 1 Score: 53.1 bits (126), Expect = 9.530e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
            LG+LSGNRF IV+R V+     +E A  S+R+ GF N+FG QR G+
Sbjct:  431 LGQLSGNRFKIVLRSVETTSENLEKATESLRQLGFINYFGMQRFGT 476          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A067CP05_SAPPC (TRUD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP05_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSP 144
            LG+  GN+F I +R V+ +P  +  A ASV  TGF N+FG QR+GSP
Sbjct:  305 LGQSGGNQFTIRLRNVEESPEVVAAAFASVASTGFINYFGLQRVGSP 351          
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: UPI001FEEF92F (pseudouridylate synthase 7 homolog isoform X1 n=5 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEEF92F)

HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPA 147
            +LGEL GN F +V+R +  +   +E A+AS+R TGF N++G QR G+ A
Sbjct:  356 KLGELQGNHFTVVLRNISGSGEQVEQAMASLRDTGFINYYGMQRFGTTA 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL8_ECTSI6.370e-956.00TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
W5L4P7_ASTMX5.680e-847.06Pseudouridine synthase 7 n=6 Tax=Astyanax mexicanu... [more]
A0A2R5L5V5_9ACAR1.450e-757.45TRUD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Z5L0L9_ORNMO4.860e-753.19Ceramide kinase (Fragment) n=1 Tax=Ornithodoros mo... [more]
A0A0M0JAE1_9EUKA5.060e-752.00Pseudouridylate synthase 7-like protein n=1 Tax=Ch... [more]
A0A1Z5KW94_ORNMO5.080e-753.19tRNA pseudouridine synthase D (Fragment) n=1 Tax=O... [more]
A0A293MZ62_ORNER6.950e-753.19tRNA pseudouridine synthase D (Fragment) n=1 Tax=O... [more]
A0A7J7JH24_BUGNE9.530e-752.17PUS7 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A067CP05_SAPPC1.300e-651.06TRUD domain-containing protein n=1 Tax=Saprolegnia... [more]
UPI001FEEF92F1.300e-646.94pseudouridylate synthase 7 homolog isoform X1 n=5 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29524contigH-paniculata_contig29524:2707..2865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D8LTL8
KEGG koko:K06176
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.915814-CDS-H-paniculata_contig29524:2706..28651622929901.915814-CDS-H-paniculata_contig29524:2706..2865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29524 2707..2865 +
1691481061.9431329-CDS-H-paniculata_contig29524:2706..28651691481061.9431329-CDS-H-paniculata_contig29524:2706..2865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29524 2707..2865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29524.8031.1prot_H-paniculata_contig29524.8031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29524 2707..2865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29524.8031.1

>prot_H-paniculata_contig29524.8031.1 ID=prot_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAA
AET
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mRNA from alignment at H-paniculata_contig29524:2707..2865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29524.8031.1 ID=mRNA_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig29524:2707..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGGGGGAGCTCTCCGGCAATCGATTTTTGATTGTCGTGCGTGGCGT TGACGTAGCACCTGCGACTATTGAGCATGCTGTTGCCTCCGTTCGGCGCA CGGGCTTCGCCAATTTTTTCGGCACTCAAAGGATAGGGTCACCGGCGGCG GCTGAAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig29524:2707..2865+

>mRNA_H-paniculata_contig29524.8031.1 ID=mRNA_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig29524:2707..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGGGGGAGCTCTCCGGCAATCGATTTTTGATTGTCGTGCGTGGCGT
TGACGTAGCACCTGCGACTATTGAGCATGCTGTTGCCTCCGTTCGGCGCA
CGGGCTTCGCCAATTTTTTCGGCACTCAAAGGATAGGGTCACCGGCGGCG
GCTGAAACAAGGTTGGGGGAGCTCTCCGGCAATCGATTTTTGATTGTCGT
GCGTGGCGTTGACGTAGCACCTGCGACTATTGAGCATGCTGTTGCCTCCG
TTCGGCGCACGGGCTTCGCCAATTTTTTCGGCACTCAAAGGATAGGGTCA
CCGGCGGCGGCTGAAACA
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