mRNA_H-paniculata_contig29524.8031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 6.370e-9 Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAAA 153
LGELSGN+F +VVRGV V A ++ ++ GF NF+GTQR+GSP AA
Sbjct: 446 LGELSGNKFSVVVRGVMVPGAAVKSSLEEACSNGFINFYGTQRVGSPLAA 495
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: W5L4P7_ASTMX (Pseudouridine synthase 7 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=W5L4P7_ASTMX) HSP 1 Score: 56.6 bits (135), Expect = 5.680e-8 Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAAA 153
+LGEL GN F +V+R + + +EHA+ S+R TGF N++G QR G+ A A
Sbjct: 329 KLGELQGNHFTVVLRNISGSDEQVEHAMTSLRATGFINYYGMQRFGTTAVA 379
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A2R5L5V5_9ACAR (TRUD domain-containing protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L5V5_9ACAR) HSP 1 Score: 55.5 bits (132), Expect = 1.450e-7 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
+LG+LSGNRF IV+RGV + IE AVAS+ + GF N+FG QR G+
Sbjct: 206 KLGDLSGNRFGIVLRGVSGSKEDIEDAVASLSQKGFINYFGLQRFGT 252
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A1Z5L0L9_ORNMO (Ceramide kinase (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L0L9_ORNMO) HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
+LG+LSGNRF IV+RG+ + I+ AVAS+ GF N+FG QR G+
Sbjct: 119 KLGDLSGNRFGIVLRGITGSKEDIQEAVASLSEKGFVNYFGLQRFGT 165
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A0M0JAE1_9EUKA (Pseudouridylate synthase 7-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAE1_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 5.060e-7 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAA 150
RLG+LSGNRF IV+R A +E A++++ R GF N+FG QR G AA
Sbjct: 161 RLGQLSGNRFRIVLRSCHGTAAEVEAALSALARRGFVNYFGMQRFGETAA 210
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A1Z5KW94_ORNMO (tRNA pseudouridine synthase D (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KW94_ORNMO) HSP 1 Score: 53.9 bits (128), Expect = 5.080e-7 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
+LG+LSGNRF IV+RG+ + I+ AVAS+ GF N+FG QR G+
Sbjct: 260 KLGDLSGNRFGIVLRGITGSKEDIQEAVASLSEKGFVNYFGLQRFGT 306
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A293MZ62_ORNER (tRNA pseudouridine synthase D (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MZ62_ORNER) HSP 1 Score: 53.5 bits (127), Expect = 6.950e-7 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
+LG+LSGNRF IV+RG+ + IE AV S+ GF N+FG QR G+
Sbjct: 265 KLGDLSGNRFGIVLRGISGSKEDIEEAVTSLSEKGFINYFGLQRFGT 311
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A7J7JH24_BUGNE (PUS7 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JH24_BUGNE) HSP 1 Score: 53.1 bits (126), Expect = 9.530e-7 Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query: 4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGS 141
LG+LSGNRF IV+R V+ +E A S+R+ GF N+FG QR G+
Sbjct: 431 LGQLSGNRFKIVLRSVETTSENLEKATESLRQLGFINYFGMQRFGT 476
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: A0A067CP05_SAPPC (TRUD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP05_SAPPC) HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6 Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 4 LGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSP 144
LG+ GN+F I +R V+ +P + A ASV TGF N+FG QR+GSP
Sbjct: 305 LGQSGGNQFTIRLRNVEESPEVVAAAFASVASTGFINYFGLQRVGSP 351
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Match: UPI001FEEF92F (pseudouridylate synthase 7 homolog isoform X1 n=5 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEEF92F) HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6 Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1
Query: 1 RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPA 147
+LGEL GN F +V+R + + +E A+AS+R TGF N++G QR G+ A
Sbjct: 356 KLGELQGNHFTVVLRNISGSGEQVEQAMASLRDTGFINYYGMQRFGTTA 404 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29524.8031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29524.8031.1 >prot_H-paniculata_contig29524.8031.1 ID=prot_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp RLGELSGNRFLIVVRGVDVAPATIEHAVASVRRTGFANFFGTQRIGSPAAback to top mRNA from alignment at H-paniculata_contig29524:2707..2865+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29524.8031.1 ID=mRNA_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig29524:2707..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29524:2707..2865+ >mRNA_H-paniculata_contig29524.8031.1 ID=mRNA_H-paniculata_contig29524.8031.1|Name=mRNA_H-paniculata_contig29524.8031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig29524:2707..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |