mRNA_H-paniculata_contig2950.8028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2950.8028.1
Unique NamemRNA_H-paniculata_contig2950.8028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2950.8028.1 vs. uniprot
Match: A0A6H5L3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R7_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.110e-23
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   40 DEWIKACWKKGECREEVKMVAEVSGLAFNDARIVALRLYNHFHWLRQLHERAERLQVIV 216
            +EW+K  WKKGECREE+K++AE SGLAF+DARIVALRLYNHF+WL QL ER+E+L V++
Sbjct:   71 EEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLLQLQERSEQLLVVI 129
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BLAST of mRNA_H-paniculata_contig2950.8028.1 vs. uniprot
Match: D7FJT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.800e-23
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   40 DEWIKACWKKGECREEVKMVAEVSGLAFNDARIVALRLYNHFHWLRQLHERAERLQVIV 216
            +EW+K  WKKGECREE+K++AE SGLAF+DARIVALRLYNHF+WL QL ER+E+L  +V
Sbjct:   77 EEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVV 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2950.8028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3R7_9PHAE5.110e-2371.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJT0_ECTSI7.800e-2371.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2950contigH-paniculata_contig2950:14007..14659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.5251172-CDS-H-paniculata_contig2950:14008..140831622929901.5251172-CDS-H-paniculata_contig2950:14008..14083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 14009..14083 -
1691481061.7813594-CDS-H-paniculata_contig2950:14008..140831691481061.7813594-CDS-H-paniculata_contig2950:14008..14083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 14009..14083 -
1622929901.5416403-CDS-H-paniculata_contig2950:14518..146591622929901.5416403-CDS-H-paniculata_contig2950:14518..14659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 14519..14659 -
1691481061.792602-CDS-H-paniculata_contig2950:14518..146591691481061.792602-CDS-H-paniculata_contig2950:14518..14659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 14519..14659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2950.8028.1prot_H-paniculata_contig2950.8028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2950 14009..14659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2950.8028.1

>prot_H-paniculata_contig2950.8028.1 ID=prot_H-paniculata_contig2950.8028.1|Name=mRNA_H-paniculata_contig2950.8028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
KYRGIIDGDDCFGDEWIKACWKKGECREEVKMVAEVSGLAFNDARIVALR
LYNHFHWLRQLHERAERLQVIV
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mRNA from alignment at H-paniculata_contig2950:14007..14659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2950.8028.1 ID=mRNA_H-paniculata_contig2950.8028.1|Name=mRNA_H-paniculata_contig2950.8028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at H-paniculata_contig2950:14007..14659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATATCGGGGGATTATTGATGGCGACGATTGCTTCGGGGACGAGTGGAT
AAAGGCTTGTTGGAAAAAGGGAGAGTGTCGAGAAGAGGTCAAAATGGTCG
CAGAGGTATCGGGTTTGGCCTTCAACGACGCTCGAATCGTGGTGAGTGCC
TCGATCAGGAAGAAGACATAGACGAACGCAACTACGTGAACCGATGTACT
TATATACCTCATACGACTAGCTTAACTATGGTATATGCAGTTATCCTGTA
TACCTACGATTACATATACCAGTAGCTCGATTTTGGACTCCAAGCATAGG
GGGGGAAAGCGAGCACGAAAAGGTGAAATATGTAGGGCTTACTTAACCAA
CTACTCCTGTTGCATTGGGGTATTACGAAGCGACAGTCTCTGTCTTTTGT
TGTTCGTCCCACGTGTCTGCAGCCGACACATAACTTCTACATTGAGCTAA
AGCTTGCAAAGACTCGATGGTTTCGTCGACAATGCCCCCCTTTCAAATTG
CACACATACCCACGGTATTGAGGGGTACCAACATACCTCGCCTGACGGTA
TAAATCGTCCTCCCGTCTCCTTCCAGGCTCTTCGCCTGTACAATCATTTC
CACTGGCTACGCCAGCTGCACGAGCGAGCCGAGCGCCTCCAGGTTATCGT
CGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2950:14007..14659-

>mRNA_H-paniculata_contig2950.8028.1 ID=mRNA_H-paniculata_contig2950.8028.1|Name=mRNA_H-paniculata_contig2950.8028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig2950:14007..14659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATATCGGGGGATTATTGATGGCGACGATTGCTTCGGGGACGAGTGGAT
AAAGGCTTGTTGGAAAAAGGGAGAGTGTCGAGAAGAGGTCAAAATGGTCG
CAGAGGTATCGGGTTTGGCCTTCAACGACGCTCGAATCGTGAAATATCGG
GGGATTATTGATGGCGACGATTGCTTCGGGGACGAGTGGATAAAGGCTTG
TTGGAAAAAGGGAGAGTGTCGAGAAGAGGTCAAAATGGTCGCAGAGGTAT
CGGGTTTGGCCTTCAACGACGCTCGAATCGTGGCTCTTCGCCTGTACAAT
CATTTCCACTGGCTACGCCAGCTGCACGAGCGAGCCGAGCGCCTCCAGGT
TATCGTCGCTCTTCGCCTGTACAATCATTTCCACTGGCTACGCCAGCTGC
ACGAGCGAGCCGAGCGCCTCCAGGTTATCGTC
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