mRNA_H-paniculata_contig2950.8027.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2950.8027.1
Unique NamemRNA_H-paniculata_contig2950.8027.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2950.8027.1 vs. uniprot
Match: D7FJT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.110e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 EGTLDQVLDFLFRVYSTAREERMIGRTELAAIFEHHVVYDDFQDQKTYKERVYRWLKRQFIELA 192
            EG+ DQVLD LFR YSTAR++  I R E+AAI   HVVY+D +D    K+RVYRWLKRQF+ LA
Sbjct:  203 EGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEDPTEEKDRVYRWLKRQFVHLA 266
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BLAST of mRNA_H-paniculata_contig2950.8027.1 vs. uniprot
Match: A0A6H5L3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.720e-9
Identity = 42/128 (32.81%), Postives = 51/128 (39.84%), Query Frame = 1 
Query:    1 EGTLDQVLDFLFRVYSTAREERMIGRTELAAIFEHHVVYDDF------------------------------------------------------------QDQKTYKERVYRWLKRQFIELAASTA 204
            EG+ DQVLD LFR YSTAR++  I R E+AAI   HVVY+D                                                             QD    K+RVYRWLKRQF+ LA +T+
Sbjct:  197 EGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEGLYLKFFWCVAVNNMRSSFAETPWEREPMDITHSSSSADCPNVRRHQTLTCAKTCAKPQQDPTEEKDRVYRWLKRQFVHLAPTTS 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2950.8027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT0_ECTSI2.110e-1762.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3R7_9PHAE9.720e-932.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2950contigH-paniculata_contig2950:11973..13074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.4450219-CDS-H-paniculata_contig2950:11974..121601622929901.4450219-CDS-H-paniculata_contig2950:11974..12160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 11975..12160 -
1691481061.751936-CDS-H-paniculata_contig2950:11974..121601691481061.751936-CDS-H-paniculata_contig2950:11974..12160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 11975..12160 -
1622929901.4647574-CDS-H-paniculata_contig2950:12945..130741622929901.4647574-CDS-H-paniculata_contig2950:12945..13074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 12946..13074 -
1691481061.7650323-CDS-H-paniculata_contig2950:12945..130741691481061.7650323-CDS-H-paniculata_contig2950:12945..13074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2950 12946..13074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2950.8027.1prot_H-paniculata_contig2950.8027.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2950 11975..13074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2950.8027.1

>prot_H-paniculata_contig2950.8027.1 ID=prot_H-paniculata_contig2950.8027.1|Name=mRNA_H-paniculata_contig2950.8027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
EGTLDQVLDFLFRVYSTAREERMIGRTELAAIFEHHVVYDDFQDQKTYKE
RVYRWLKRQFIELAASTAAVEDENRNINSVGKTHALDESAITTVAITCQA
PSQRP
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mRNA from alignment at H-paniculata_contig2950:11973..13074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2950.8027.1 ID=mRNA_H-paniculata_contig2950.8027.1|Name=mRNA_H-paniculata_contig2950.8027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1102bp|location=Sequence derived from alignment at H-paniculata_contig2950:11973..13074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGAACGTTAGACCAAGTACTTGATTTTTTGTTCAGAGTGTATTCTAC
CGCAAGGGAGGAGCGCATGATAGGGCGCACTGAGCTGGCGGCAATTTTCG
AGCATCATGTCGTTTACGACGATTTTCAGGTGTGTAAACTCCCGCCGAAA
CCCTGTAACCTGCTATTGTGATTTACCAGACATACAAGTGAATTGCGCAT
TGTACATTTTCACATGCCATCCGCCTGATGCGTACCCTTGAATGAACCAT
ACTTGAAGTTCTGTCGTCGATATTTCAAAATAGGAACGGCATGGTCGTAC
TTGAGCTCGTCCTCAACAGTCATATTCCGTCGTCGATCCGCAATCTAAAG
CCTGGACACAGCTTGAGGATATGCAATTGTTGTCATAAGAACATTGAAAT
CCCGACAAACACCGACCACGTGGCTATCGACATGAAATTCCACATGCCGT
TTACTCGAACGTGCTGCAGTGCGACGTCGCCTTTTACGAGTGTCCAACAT
ATGACCTCCGTCCAGGTCAAGTGCAACCACAGCTCAAACGACAATTACAG
AACATATCTATTTATATACACACACCTTTGGAAGAACTCGCAGGTTATAT
AGATAGATATGATCTGTAATTGTCGTATAAAACTAACGCTTTTGGCAAGA
TTTAAGCTCTCCTGGTTGCCTTCTTATATTGCACATCGCCTTTGGTAGCA
ACGCAGCGAAGAGAATTGCTGTTTTCCCCGGGTCCCTGTTGGCATCAGCA
ATTGTCTTATGGCATCTGCACGGGTATGCACCTTGACTCCGGTGTATCCA
GCCAAGACCTATATGACACTACGACCGCTATTTCGATTTATTCTTCTTTC
ATCGTGGCGAATATATTTGTTCCACCTTTTTTTCACGGCGCTCGACTCGC
ACTCTTTGTTTCAGGACCAGAAAACGTACAAGGAAAGGGTGTATCGATGG
TTGAAACGGCAATTTATTGAGCTAGCCGCCTCGACTGCCGCTGTAGAAGA
CGAAAATCGAAACATCAACAGTGTCGGGAAGACGCACGCTCTCGACGAAT
CAGCGATAACTACGGTGGCCATCACTTGCCAAGCTCCGAGCCAACGGCCG
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig2950:11973..13074-

>mRNA_H-paniculata_contig2950.8027.1 ID=mRNA_H-paniculata_contig2950.8027.1|Name=mRNA_H-paniculata_contig2950.8027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2950:11973..13074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGAACGTTAGACCAAGTACTTGATTTTTTGTTCAGAGTGTATTCTAC
CGCAAGGGAGGAGCGCATGATAGGGCGCACTGAGCTGGCGGCAATTTTCG
AGCATCATGTCGTTTACGACGATTTTCAGGAGGGAACGTTAGACCAAGTA
CTTGATTTTTTGTTCAGAGTGTATTCTACCGCAAGGGAGGAGCGCATGAT
AGGGCGCACTGAGCTGGCGGCAATTTTCGAGCATCATGTCGTTTACGACG
ATTTTCAGGACCAGAAAACGTACAAGGAAAGGGTGTATCGATGGTTGAAA
CGGCAATTTATTGAGCTAGCCGCCTCGACTGCCGCTGTAGAAGACGAAAA
TCGAAACATCAACAGTGTCGGGAAGACGCACGCTCTCGACGAATCAGCGA
TAACTACGGTGGCCATCACTTGCCAAGCTCCGAGCCAACGGCCGGACCAG
AAAACGTACAAGGAAAGGGTGTATCGATGGTTGAAACGGCAATTTATTGA
GCTAGCCGCCTCGACTGCCGCTGTAGAAGACGAAAATCGAAACATCAACA
GTGTCGGGAAGACGCACGCTCTCGACGAATCAGCGATAACTACGGTGGCC
ATCACTTGCCAAGCTCCGAGCCAACGGCCG
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