mRNA_H-paniculata_contig295.8025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig295.8025.1
Unique NamemRNA_H-paniculata_contig295.8025.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig295.8025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig295contigH-paniculata_contig295:11413..13339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size668
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig295.8025.1prot_H-paniculata_contig295.8025.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig295 11413..13174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.228791-CDS-H-paniculata_contig295:11412..115331622929901.228791-CDS-H-paniculata_contig295:11412..11533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 11413..11533 -
1691481061.654895-CDS-H-paniculata_contig295:11412..115331691481061.654895-CDS-H-paniculata_contig295:11412..11533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 11413..11533 -
1622929901.2453883-CDS-H-paniculata_contig295:12615..129221622929901.2453883-CDS-H-paniculata_contig295:12615..12922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 12616..12922 -
1691481061.6654146-CDS-H-paniculata_contig295:12615..129221691481061.6654146-CDS-H-paniculata_contig295:12615..12922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 12616..12922 -
1622929901.2631717-CDS-H-paniculata_contig295:13101..131741622929901.2631717-CDS-H-paniculata_contig295:13101..13174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 13102..13174 -
1691481061.6752486-CDS-H-paniculata_contig295:13101..131741691481061.6752486-CDS-H-paniculata_contig295:13101..13174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig295 13102..13174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.2926579-UTR-H-paniculata_contig295:13174..133391622929901.2926579-UTR-H-paniculata_contig295:13174..13339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig295 13175..13339 -
1691481061.6848276-UTR-H-paniculata_contig295:13174..133391691481061.6848276-UTR-H-paniculata_contig295:13174..13339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig295 13175..13339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig295.8025.1

>prot_H-paniculata_contig295.8025.1 ID=prot_H-paniculata_contig295.8025.1|Name=mRNA_H-paniculata_contig295.8025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MTDRERPHTADGSVGSRLPTSRTVDTNNSQGSYSHEPAVHPLGPLPTSQR
RPSSAGNPEIHQKLAHTIKSHNNSPRPETAPAAIRRVASRTGRVRLRKTT
SERKEPGAAAREVESRLNALRSDDKLRDSLFKRVDRIADGRKIPHVKRAW
SSRGVRVLERRYPKTRR
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mRNA from alignment at H-paniculata_contig295:11413..13339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig295.8025.1 ID=mRNA_H-paniculata_contig295.8025.1|Name=mRNA_H-paniculata_contig295.8025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1927bp|location=Sequence derived from alignment at H-paniculata_contig295:11413..13339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGTTTGTATTGGCCCTCGCGAAATGCTTGCCATACGTCAAGCTCTGC
AATGTTGAGAGATAGTGGCGGTAACGTTTGCATGAACGTTTTACACGCTG
GAGAAAAACTGCTGGCTGTACTGTCTTTAGTTGGGAACGTGTAAAATACT
CCATTCTCGTACGGAATGACGGACAGAGAACGACCCCACACCGCTGACGG
GAGCGTGGGCTCTCGTCTGCCGACGTCGCGCACAGTCGGTGAGAGAGGCA
GTGATGCGCAGTTTTAGGATATGTAGAGCTATCCGTAGTGATTGAAAGCC
AATACTACTAGGTGCACGGGACACCCACACTCTCGAACGATACTTCGCGG
TTAGATTCTTACTATCCGTGAATTCCGCCCCTTTCAACCACCTCGTCTCT
ACCACCTGCCACGACAGACACCAACAATTCGCAGGGTAGCTACAGCCATG
AGCCAGCCGTCCATCCTCTTGGCCCCCTTCCTACATCCCAGCGGCGCCCC
TCGTCGGCAGGGAATCCAGAAATTCACCAAAAGCTGGCCCATACAATCAA
ATCCCACAATAACAGCCCAAGGCCCGAAACTGCACCCGCTGCGATCCGGA
GAGTGGCCTCGCGGACGGGCAGGGTACGGCTGAGGAAGACGACGAGTGAA
AGGAAGGAACCCGGGGCTGCGGCGCGGGAGGTGGAATCGAGGCTAAACGC
CCTCCGATCGGACGACAAGCTGAGGTAACACAGGGAAAAAATAGTAGACT
CGTGATTTGAGAAGGCAGTAGGCCCGACAACCGTACCAGAGCTCGAAATA
CGACGACGTATGTACGTGCACAACAAACAAGACGGTAATTTCTGGAAACG
AAGGGCACGAAAAACCCGTGCTGGTACGTCGGCGAGCAGACATGTATTGC
AATGTGTAGTAGAAGCGATCGGCCACGTTCACAAGCAGTAGGTAGGCAAT
CCAGACAGTACAGTCCATACTGTTGGTGCTCTCGTCAGCCTGAAACTTGA
ACGGATAGCCTTAGCCTTACCGATCTGAACATTACAGCCAGTGCAGACGA
ACAGTAAATGTGTTTGGCACAAGGCACATGAAGCAATCGTGACTGAAGAA
CCGCCACTTCGAAATCAGTACGTGCAGATGGTAGCGGCATCATTCATTAT
TTATCTTGACGTAGACTACCAAAATCATGCGTGATTAACAGAGGGCATTC
CTACTGCAGGAGAAAATATACGTTTTTCGTAAAGCAAATGCAAACAATCA
ACCGTAGTTCACCATAAATGGACCAATCGCGTGACAGGGTTACAAGCCGT
CGAGTAAGTTTTCTACTATTAGAGCTCTAGAGTGCGCAAAACGAACTCTT
TTGCAAAGTGTGATTTCGCCGTGTATAGCTAGAAGTGAGGGCCTCGTGCC
GGACCCCAGTCCACCTACAGTAACGTCTCGTTGCAAAAGGACTTCCTTTT
CGCAACCAGTTACTCTTCGTATCTCTCAGAAACAGGACAATTTCGAAAAG
AAGACCCTTTCGTAACGAGACGTTACTGTAGGTGGACTGGGGTCCGGCAC
GAGGCCCTCACTTCTAGCTATACACGGCGAAATCACACTTTGCGAAAGGA
ACTCGTTTCGCGCAAACACCATATTACTGGGGACATGCATTTTGAACTCG
TTTTGCATACCATGATCTACCGACCTCAGAGTTAGGGCAACGACGCGACA
CATCATCGGACATGCTCCGTGCTCGCATGGGAACTATGAGACAGATCGTG
ATTGACTGCCTTTCGTCAAAGCACGTTACACTCCGTTGCTCTATGTGGTT
GAACAGGGATAGCTTGTTCAAGAGGGTAGACCGCATTGCCGATGGCAGAA
AAATCCCCCATGTTAAGAGGGCGTGGTCGTCTAGGGGAGTACGCGTGCTG
GAACGGAGATATCCCAAAACTCGAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig295:11413..13339-

>mRNA_H-paniculata_contig295.8025.1 ID=mRNA_H-paniculata_contig295.8025.1|Name=mRNA_H-paniculata_contig295.8025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig295:11413..13339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGACAGAGAACGACCCCACACCGCTGACGGGAGCGTGGGCTCTCG
TCTGCCGACGTCGCGCACAGTCGATGACGGACAGAGAACGACCCCACACC
GCTGACGGGAGCGTGGGCTCTCGTCTGCCGACGTCGCGCACAGTCGACAC
CAACAATTCGCAGGGTAGCTACAGCCATGAGCCAGCCGTCCATCCTCTTG
GCCCCCTTCCTACATCCCAGCGGCGCCCCTCGTCGGCAGGGAATCCAGAA
ATTCACCAAAAGCTGGCCCATACAATCAAATCCCACAATAACAGCCCAAG
GCCCGAAACTGCACCCGCTGCGATCCGGAGAGTGGCCTCGCGGACGGGCA
GGGTACGGCTGAGGAAGACGACGAGTGAAAGGAAGGAACCCGGGGCTGCG
GCGCGGGAGGTGGAATCGAGGCTAAACGCCCTCCGATCGGACGACAAGCT
GAGACACCAACAATTCGCAGGGTAGCTACAGCCATGAGCCAGCCGTCCAT
CCTCTTGGCCCCCTTCCTACATCCCAGCGGCGCCCCTCGTCGGCAGGGAA
TCCAGAAATTCACCAAAAGCTGGCCCATACAATCAAATCCCACAATAACA
GCCCAAGGCCCGAAACTGCACCCGCTGCGATCCGGAGAGTGGCCTCGCGG
ACGGGCAGGGTACGGCTGAGGAAGACGACGAGTGAAAGGAAGGAACCCGG
GGCTGCGGCGCGGGAGGTGGAATCGAGGCTAAACGCCCTCCGATCGGACG
ACAAGCTGAGGGATAGCTTGTTCAAGAGGGTAGACCGCATTGCCGATGGC
AGAAAAATCCCCCATGTTAAGAGGGCGTGGTCGTCTAGGGGAGTACGCGT
GCTGGAACGGAGATATCCCAAAACTCGAAGAGGATAGCTTGTTCAAGAGG
GTAGACCGCATTGCCGATGGCAGAAAAATCCCCCATGTTAAGAGGGCGTG
GTCGTCTAGGGGAGTACGCGTGCTGGAACGGAGATATCCCAAAACTCGAA
GA
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