mRNA_H-paniculata_contig2949.8024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2949.8024.1
Unique NamemRNA_H-paniculata_contig2949.8024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: D8LMR1_ECTSI (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.090e-48
Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 PHRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            PH GSATPLAGLRALDVGCGGGLLSESLARLGAEV G+DPS ENVAVASAH+ GDPLTR I+YEA TAEELE RGE++D+V +LEVIEHVE+P GFVSSLA LTR
Sbjct:  121 PHWGSATPLAGLRALDVGCGGGLLSESLARLGAEVVGVDPSPENVAVASAHAQGDPLTRTIRYEATTAEELENRGEQFDLVTSLEVIEHVEDPAGFVSSLASLTR 225
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: A0A836CM95_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM95_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.200e-34
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    4 HRGSA-TPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGER--YDMVAALEVIEHVENPPGFVSSLADLTR 315
            H GSA  PLAG   LDVGCGGGLLSESLARLG  V GIDPS ENVAVA+ H+LGDPLTRGI YEAA AE+L  RGE   YD+V ALEV+EHV +   F+ SLA L +
Sbjct:   19 HSGSAFKPLAGRTCLDVGCGGGLLSESLARLGGNVKGIDPSPENVAVAAEHALGDPLTRGIAYEAAAAEDLVDRGESGAYDLVCALEVVEHVTDVSAFIGSLAALVK 125
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: W4H9S5_9STRA (3-demethylubiquinone-9 3-O-methyltransferase, variant 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9S5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.450e-31
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 PHRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            PHR +A PL GLR LDVGCGGG+LSESLARLG +VTG+DP   N+  ASAH+  D  T  I+Y   TA+ L A+ E +D+V ALEV+EHV++ P F+ SL  L +
Sbjct:   59 PHRDAAWPLKGLRTLDVGCGGGILSESLARLGGDVTGVDPGQANIDAASAHAEQDDETENIRYICTTADALVAQNETFDVVCALEVVEHVDDVPAFIQSLTQLVK 163
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: W4HBW3_9STRA (3-demethylubiquinone-9 3-O-methyltransferase, variant 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBW3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.390e-30
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 PHRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            PHR +A PL GLR LDVGCGGG+LSESLARLG +VTG+DP   N+  ASAH+  D  T  I+Y   TA+ L A+ E +D+V ALEV+EHV++ P F+ SL  L +
Sbjct:   59 PHRDAAWPLKGLRTLDVGCGGGILSESLARLGGDVTGVDPGQANIDAASAHAEQDDETENIRYICTTADALVAQNETFDVVCALEVVEHVDDVPAFIQSLTQLVK 163
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: W4HCC1_9STRA (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCC1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.380e-30
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 PHRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            PHR +A PL GLR LDVGCGGG+LSESLARLG +VTG+DP   N+  ASAH+  D  T  I+Y   TA+ L A+ E +D+V ALEV+EHV++ P F+ SL  L +
Sbjct:   59 PHRDAAWPLKGLRTLDVGCGGGILSESLARLGGDVTGVDPGQANIDAASAHAEQDDETENIRYICTTADALVAQNETFDVVCALEVVEHVDDVPAFIQSLTQLVK 163
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: A0A418B3S9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B3S9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.150e-29
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    7 RGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            R +A PL GLR LDVGCGGG+LSESLARLGA VTG+DP   N+  ASAH+  D  T  I+Y  +TA+ L A+GE +D+V ALEV+EHV + P F+ SLA L +
Sbjct:   10 RDAAWPLKGLRTLDVGCGGGILSESLARLGATVTGVDPGQANIDAASAHAALDYETEDIRYICSTADALVAQGETFDVVCALEVVEHVNDVPAFIQSLAQLVK 112
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: A0A7S3HQ45_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ45_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.310e-29
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    4 HRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLA 303
            H   +  L GL  LDVGCGGGLLSESLARLGA +T IDP+ EN+ VAS+HS  DPLT  I Y+ +T EE+ A G+++D+V ALEVIEHV++P GF+ + A
Sbjct:   75 HLFESQQLKGLNILDVGCGGGLLSESLARLGANMTSIDPAPENIKVASSHSRNDPLTATINYKQSTIEEILASGQKFDVVCALEVIEHVDDPRGFIQACA 174
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: A0A024URI6_9STRA (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URI6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.630e-29
Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    7 RGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
            R +A PL GLR LDVGCGGG+LSESLARLGA VTG+DP   N+  ASAH+  D  T  I+Y  +TA+ L A+GE +D+V ALEV+EHV + P F+ SLA L +
Sbjct:   61 RDAAWPLKGLRTLDVGCGGGILSESLARLGATVTGVDPGQANIDAASAHAALDYETEDIRYICSTADALVAQGETFDVVCALEVVEHVNDVPAFIQSLAQLVK 163
[Close]
BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: A0A6G0XNU6_9STRA (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNU6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.840e-29
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    4 HRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLTR 315
             R +A PL GLR LDVGCGGG+LSESLARLGA+VTG+DP   N+  A+AH+  DP T  I+Y  +TAE L  + E +D+V ALEV+EHV+N P F+ +L  L +
Sbjct:   59 QRSAAWPLKGLRTLDVGCGGGILSESLARLGADVTGVDPGQANIDSATAHAQLDPETDNIRYLCSTAEALVEQNETFDIVCALEVVEHVDNVPAFIETLTKLVK 162
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BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Match: C1E266_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E266_MICCC)

HSP 1 Score: 112 bits (280), Expect = 1.870e-28
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   22 PLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASAHSLGDP-LTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSLADLT 312
            PLAGLR LDVGCGGG+L ESLARLGA+VTGID +  N+A+A+AH+  DP ++R + Y A TAEE+ A G ++D V +LEV+EHV +P GFV  L  LT
Sbjct:   52 PLAGLRILDVGCGGGILCESLARLGADVTGIDAAKGNIAIATAHAAKDPGMSRRVTYHATTAEEVAAAGAKFDAVVSLEVVEHVNDPEGFVRQLEALT 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2949.8024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR1_ECTSI1.090e-4882.86Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
A0A836CM95_9STRA1.200e-3468.22S-adenosyl-L-methionine-dependent methyltransferas... [more]
W4H9S5_9STRA5.450e-3156.193-demethylubiquinone-9 3-O-methyltransferase, vari... [more]
W4HBW3_9STRA1.390e-3056.193-demethylubiquinone-9 3-O-methyltransferase, vari... [more]
W4HCC1_9STRA3.380e-3056.19Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
A0A418B3S9_9STRA1.150e-2958.25Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3HQ45_9STRA6.310e-2959.00Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A024URI6_9STRA7.630e-2958.25Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
A0A6G0XNU6_9STRA9.840e-2955.77Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
C1E266_MICCC1.870e-2860.20Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2949contigH-paniculata_contig2949:5662..6996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.8e-40
Seed eggNOG ortholog2880.D8LMR1
Preferred nameCOQ3
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568,ko:K00591
KEGG ReactionR02175,R04711,R04988,R05614,R07235,R08769,R08771,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117,M00128
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004395,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009108,GO:0009987,GO:0010420,GO:0016020,GO:0016740,GO:0016741,GO:0019866,GO:0019898,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0061542,GO:0061543,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
EC2.1.1.114,2.1.1.222,2.1.1.64
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2949.8024.1prot_H-paniculata_contig2949.8024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2949 5662..6996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.1510944-CDS-H-paniculata_contig2949:5661..57391622929901.1510944-CDS-H-paniculata_contig2949:5661..5739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 5662..5739 +
1691481061.621071-CDS-H-paniculata_contig2949:5661..57391691481061.621071-CDS-H-paniculata_contig2949:5661..5739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 5662..5739 +
1622929901.1652339-CDS-H-paniculata_contig2949:6442..65871622929901.1652339-CDS-H-paniculata_contig2949:6442..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 6443..6587 +
1691481061.6346912-CDS-H-paniculata_contig2949:6442..65871691481061.6346912-CDS-H-paniculata_contig2949:6442..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 6443..6587 +
1622929901.1880727-CDS-H-paniculata_contig2949:6904..69961622929901.1880727-CDS-H-paniculata_contig2949:6904..6996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 6905..6996 +
1691481061.6446388-CDS-H-paniculata_contig2949:6904..69961691481061.6446388-CDS-H-paniculata_contig2949:6904..6996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2949 6905..6996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2949.8024.1

>prot_H-paniculata_contig2949.8024.1 ID=prot_H-paniculata_contig2949.8024.1|Name=mRNA_H-paniculata_contig2949.8024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
PHRGSATPLAGLRALDVGCGGGLLSESLARLGAEVTGIDPSHENVAVASA
HSLGDPLTRGIKYEAATAEELEARGERYDMVAALEVIEHVENPPGFVSSL
ADLTR
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mRNA from alignment at H-paniculata_contig2949:5662..6996+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2949.8024.1 ID=mRNA_H-paniculata_contig2949.8024.1|Name=mRNA_H-paniculata_contig2949.8024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-paniculata_contig2949:5662..6996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATAGGGGGTCAGCTACCCCGCTTGCCGGTCTTCGCGCGTTGGATGT
GGGCTGCGGTGGTGGGCTGCTGAGCGAGGTTGGTATTACGTCTTATTCTA
TTTTAGACGAGTCTGTTCTGTGCTGTACTAGAGTGTGCCTGAATATTACA
AAAATGATAATTTTGTGTTTCTTGTACTGTACATGGATGGATCTATGCTG
GACTACAGTAGTATCTGAATAGGTGTAGGTTAATCCTCGAGTGAAATGAA
GCGTCTAGGTTATCCTGCCAGCCGATACGTTCGACGCACAGGAACGTGCT
TTCGCCCTTACAAGACAAACGTTACCATCTATTGTGATGTGGAATGGTAT
GGTGGCGTTGAAGAGCTTCACGAGCTCAACAACAGATGACCAATCTTGCA
GAATGTAATCTGTGTCTCCAACGTGATTGTTGGCGTGCGTTGTTTTTTCA
AGACTATTACATGGACGATCGCTACGCCACGAAAAATTGTGGATACAGTA
TGGATACTGATCCAAGAGACGACCACCATCGTAATGAAATCACTTGGGTT
GAATACGAAAAAAATATTCCAAAACAAACCACCACCTTCCCGTAGCAATA
TTAGTTTCAGTATCGTACCATGTGCTCCCATTAGAATTGCCGTGAATTTC
CTGTACTCTCCTACCGCTTGGTTGGACATGGGACGCACTGCTGATAGTTT
GCGGGCAGTGGTAAATGAAGCGCGCAAAGACACGACCCACTCATCACGTC
TCACTTCCTTCTTCCCGTGCAATATTTCCAGTCTCTCGCTCGCCTAGGTG
CGGAAGTGACTGGTATTGATCCTTCGCATGAAAACGTGGCGGTAGCATCT
GCGCACTCTCTGGGAGATCCGCTGACTCGCGGCATCAAGTACGAAGCTGC
GACGGCGGAAGAGCTAGAAGCACGAGGTAAGCATGATAGAGGATTACTTT
TTTTTTCTTTTTGGTATCTGGACATTTTGGAGTCCTGCAAAAGGTCAGTC
ACAAATGCGGTAAATCGCGAACTCTTTGGATGATTTACTTGATCTTTGGA
GTTTACTCGTTGAGATTATTAATTTTTGTTTTCGTGAACGCACCTGAGAT
CTCTTCGCGCAGTGTGCCGATAGCGCAGTTCCCCCCCCCCCATAGATCAC
ATACAATGCATTGTCACTATTGCAAAGGAAGGCGCGTGTGACTTGTGTTT
GTCAGCCATTTTCACTCTGCACGTGTGTATACGCACTAAACAGGGGAGCG
CTATGACATGGTGGCAGCTCTGGAGGTTATTGAGCACGTGGAGAATCCGC
CAGGATTCGTGTCGTCTCTGGCAGACCTCACGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2949:5662..6996+

>mRNA_H-paniculata_contig2949.8024.1 ID=mRNA_H-paniculata_contig2949.8024.1|Name=mRNA_H-paniculata_contig2949.8024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2949:5662..6996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATAGGGGGTCAGCTACCCCGCTTGCCGGTCTTCGCGCGTTGGATGT
GGGCTGCGGTGGTGGGCTGCTGAGCGAGCCCCATAGGGGGTCAGCTACCC
CGCTTGCCGGTCTTCGCGCGTTGGATGTGGGCTGCGGTGGTGGGCTGCTG
AGCGAGTCTCTCGCTCGCCTAGGTGCGGAAGTGACTGGTATTGATCCTTC
GCATGAAAACGTGGCGGTAGCATCTGCGCACTCTCTGGGAGATCCGCTGA
CTCGCGGCATCAAGTACGAAGCTGCGACGGCGGAAGAGCTAGAAGCACGA
GTCTCTCGCTCGCCTAGGTGCGGAAGTGACTGGTATTGATCCTTCGCATG
AAAACGTGGCGGTAGCATCTGCGCACTCTCTGGGAGATCCGCTGACTCGC
GGCATCAAGTACGAAGCTGCGACGGCGGAAGAGCTAGAAGCACGAGGGGA
GCGCTATGACATGGTGGCAGCTCTGGAGGTTATTGAGCACGTGGAGAATC
CGCCAGGATTCGTGTCGTCTCTGGCAGACCTCACGCGGGGGAGCGCTATG
ACATGGTGGCAGCTCTGGAGGTTATTGAGCACGTGGAGAATCCGCCAGGA
TTCGTGTCGTCTCTGGCAGACCTCACGCGG
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