mRNA_H-paniculata_contig2945.8018.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2945.8018.1
Unique NamemRNA_H-paniculata_contig2945.8018.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2945.8018.1 vs. uniprot
Match: D7G947_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G947_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 7.550e-7
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = -3 
Query:  294 KRLFSSMPSPSHLRRSLSFAGSISAISSAASRVAIGVMTPVRR 422
            KR+   +PSPSH RRS+SF GS++AISSAA+RVA G MTP+RR
Sbjct:   77 KRMLHGVPSPSHFRRSMSFQGSLTAISSAANRVATGAMTPIRR 119
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BLAST of mRNA_H-paniculata_contig2945.8018.1 vs. uniprot
Match: A0A6H5KGA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.030e-6
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = -3 
Query:  294 KRLFSSMPSPSHLRRSLSFAGSISAISSAASRVAIGVMTPVRR 422
            KR+   +PSPSH RRS+SF GS+SAISSAA+RVA G MTP+RR
Sbjct:   75 KRMLHGVPSPSHFRRSMSFQGSLSAISSAANRVATGAMTPIRR 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2945.8018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G947_ECTSI7.550e-767.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGA5_9PHAE3.030e-669.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2945contigH-paniculata_contig2945:9740..10505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size766
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2945.8018.1prot_H-paniculata_contig2945.8018.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2945 9745..10149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.7379034-UTR-H-paniculata_contig2945:9739..97441622929900.7379034-UTR-H-paniculata_contig2945:9739..9744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2945 9740..9744 +
1691481061.4500742-UTR-H-paniculata_contig2945:9739..97441691481061.4500742-UTR-H-paniculata_contig2945:9739..9744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2945 9740..9744 +
1622929900.7675576-UTR-H-paniculata_contig2945:10149..105051622929900.7675576-UTR-H-paniculata_contig2945:10149..10505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2945 10150..10505 +
1691481061.467957-UTR-H-paniculata_contig2945:10149..105051691481061.467957-UTR-H-paniculata_contig2945:10149..10505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2945 10150..10505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.754963-CDS-H-paniculata_contig2945:9744..101491622929900.754963-CDS-H-paniculata_contig2945:9744..10149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 9745..10149 +
1691481061.4590843-CDS-H-paniculata_contig2945:9744..101491691481061.4590843-CDS-H-paniculata_contig2945:9744..10149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 9745..10149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2945.8018.1

>prot_H-paniculata_contig2945.8018.1 ID=prot_H-paniculata_contig2945.8018.1|Name=mRNA_H-paniculata_contig2945.8018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MYSNNCRRQTRRFRRHYTAAATLFPSLNGRLILWRHAPSLAGGFVRLRYV
GGKSAVPAAPASSTTASIGTRACATTVGAPSAEVLGAIAVLAALLAAANG
RHDPDGHARGRARDGRYRARKGQRAAQVRWARHG*
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mRNA from alignment at H-paniculata_contig2945:9740..10505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2945.8018.1 ID=mRNA_H-paniculata_contig2945.8018.1|Name=mRNA_H-paniculata_contig2945.8018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at H-paniculata_contig2945:9740..10505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTATGTACAGCAACAACTGCAGACGACAAACCCGCCGCTTCAGACGA
CACTACACCGCTGCTGCCACTCTTTTCCCCAGCCTCAACGGGCGACTCAT
CCTCTGGCGACACGCCCCCAGTCTGGCCGGGGGATTCGTACGGCTCCGAT
ACGTTGGTGGGAAGAGTGCTGTGCCTGCTGCCCCTGCGAGCAGCACGACC
GCCAGCATCGGGACCCGTGCCTGCGCCACTACCGTTGGTGCGCCCTCGGC
GGAGGTCCTCGGTGCTATTGCGGTCCTCGCGGCGCTGCTTGCGGCGGCGA
ACGGGCGTCATGACCCCGATGGCCACGCGCGAGGCCGCGCTCGAGATGGC
AGATATCGAGCCCGCAAAGGACAGCGAGCGGCGCAGGTGAGATGGGCTCG
GCATGGATGAGAACAAACGCTTTCGCGACGGCCGATTCGGCGTATTTTGT
CCCGCCGCGCCGCTGCCGGAAGCTGATTTTGGGCAAGGCGTCACTTCATT
GTTGACCCCGTTGTTGCTGCTGCAGCCTCTCCGGTCTAGAACTCGGCTGC
CGTGAACATCTCGGCTATTTACGATTGAGGAACCTCCACGGACCAGCGCA
GGGAACGACTTGGACGACCACATCGTGGTAACCCGGCCCCGGGCTTCGTC
GATCTCAGAGTTTGCTCGATCAGGGGTGGCAAACCCTCCCGGGTTTGCTC
GATCGCCAGACCTTTCGCCGTTCGGGGTCGTGCAAAAGCCTCCGGGTGGC
GGCGCCAATAAGGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2945:9740..10505+

>mRNA_H-paniculata_contig2945.8018.1 ID=mRNA_H-paniculata_contig2945.8018.1|Name=mRNA_H-paniculata_contig2945.8018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig2945:9740..10505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAGCAACAACTGCAGACGACAAACCCGCCGCTTCAGACGACACTA
CACCGCTGCTGCCACTCTTTTCCCCAGCCTCAACGGGCGACTCATCCTCT
GGCGACACGCCCCCAGTCTGGCCGGGGGATTCGTACGGCTCCGATACGTT
GGTGGGAAGAGTGCTGTGCCTGCTGCCCCTGCGAGCAGCACGACCGCCAG
CATCGGGACCCGTGCCTGCGCCACTACCGTTGGTGCGCCCTCGGCGGAGG
TCCTCGGTGCTATTGCGGTCCTCGCGGCGCTGCTTGCGGCGGCGAACGGG
CGTCATGACCCCGATGGCCACGCGCGAGGCCGCGCTCGAGATGGCAGATA
TCGAGCCCGCAAAGGACAGCGAGCGGCGCAGGTGAGATGGGCTCGGCATG
GATGAATGTACAGCAACAACTGCAGACGACAAACCCGCCGCTTCAGACGA
CACTACACCGCTGCTGCCACTCTTTTCCCCAGCCTCAACGGGCGACTCAT
CCTCTGGCGACACGCCCCCAGTCTGGCCGGGGGATTCGTACGGCTCCGAT
ACGTTGGTGGGAAGAGTGCTGTGCCTGCTGCCCCTGCGAGCAGCACGACC
GCCAGCATCGGGACCCGTGCCTGCGCCACTACCGTTGGTGCGCCCTCGGC
GGAGGTCCTCGGTGCTATTGCGGTCCTCGCGGCGCTGCTTGCGGCGGCGA
ACGGGCGTCATGACCCCGATGGCCACGCGCGAGGCCGCGCTCGAGATGGC
AGATATCGAGCCCGCAAAGGACAGCGAGCGGCGCAGGTGAGATGGGCTCG
GCATGGATGA
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