mRNA_H-paniculata_contig2945.8019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2945.8019.1
Unique NamemRNA_H-paniculata_contig2945.8019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2945.8019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2945contigH-paniculata_contig2945:10489..16119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_011240.1
Exons3
Model size267
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2945.8019.1prot_H-paniculata_contig2945.8019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2945 10489..16119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.6635687-CDS-H-paniculata_contig2945:10488..105381622929900.6635687-CDS-H-paniculata_contig2945:10488..10538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 10489..10538 -
1691481061.4124293-CDS-H-paniculata_contig2945:10488..105381691481061.4124293-CDS-H-paniculata_contig2945:10488..10538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 10489..10538 -
1622929900.6785583-CDS-H-paniculata_contig2945:11065..112111622929900.6785583-CDS-H-paniculata_contig2945:11065..11211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 11066..11211 -
1691481061.4310462-CDS-H-paniculata_contig2945:11065..112111691481061.4310462-CDS-H-paniculata_contig2945:11065..11211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 11066..11211 -
1622929900.6911495-CDS-H-paniculata_contig2945:16048..161191622929900.6911495-CDS-H-paniculata_contig2945:16048..16119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 16049..16119 -
1691481061.4410152-CDS-H-paniculata_contig2945:16048..161191691481061.4410152-CDS-H-paniculata_contig2945:16048..16119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2945 16049..16119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2945.8019.1

>prot_H-paniculata_contig2945.8019.1 ID=prot_H-paniculata_contig2945.8019.1|Name=mRNA_H-paniculata_contig2945.8019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MAAGGGGGPGRDRSSPLTTSGRRRSLQSRFRDGSRSTSMPDPMRPTPKPK
SGLFSRLASRGDIRLKEDTWAPGKARKANRPPIPALLAP
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mRNA from alignment at H-paniculata_contig2945:10489..16119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2945.8019.1 ID=mRNA_H-paniculata_contig2945.8019.1|Name=mRNA_H-paniculata_contig2945.8019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5631bp|location=Sequence derived from alignment at H-paniculata_contig2945:10489..16119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCAGGCGGAGGCGGTGGTCCAGGAAGGGATCGATCTTCGCCTCT
GACTACCTCTGGACGACGCAGGTCAGTCGGGAAAGAGGCAATGCGAGTGC
ATCGAGAAAAAAAATGTATGAGGGTGTCACCGTAGGGATGTCATCGGTGC
AAGTTTCATTGTTGCAACAATAAGTTTACCCATTATCCTATAGCGAAACC
GCGTCGGTGGTAGTCGCAGTGTGAGATGAACAGTAAGGGTAAAAAACAAA
CCATGCACCCCTTGCATTTATGTATTTCATGGCACCAACTCCCGCCGTGC
GTATGTCTCGTCTTTGGTTCACGTTCACGAGTCTTCGTACCTTGCCTACC
TTCCGTCTGTAAATATTTGGCTCCTTCGTCTGCACCTCTCAAAAAACTCG
GTACTTCAGTCGAGATGGTTGGTGTTAACGTTACTACATGTATTCTGTTT
TCGATATTTTTCGACGTCACGTACATGACAGCTACTGTACAAAGGAAAGG
CAGGAAGTACTGAAAGAATATTTGCCGTTCGCGGTTGTTGTGTGTGAGCT
GATGCCCGCTTCCCCACTCCACCACATCCATGAACCCCACCATCTCATGA
TGGACAGATCACCGCCTGTCCCTGCTTTGCCCCATATTCTACACTATGAT
GCTGTCCTTGATTAAATTGGGCTCTTGGACCCGTAACGACATATTGGTTG
CGATGCCATGTCGATTCTTGAGGACCGCGAAAATATGACGTTAATTTTTG
TTGTCTTTACAGACATCATACTGGGTATCGGGGGTGTGTTCACCTGGACC
AATATTGAAACAGCTACAGACAGTCAGTATTCTTTTCCTCTAATTGGACA
CCCCGCAGGCCTGACGTCGATGATTTTATTTTGTTAGTGGTAGCGATGTT
TGCGTGTCGGGCAGTGTATATTTGACGTAGTCAGTGCGTGGATGGACAAA
ATAACTGTTTTTTGTCGAAGACTTGTTACATGTTAGTCGGAAAGCTGCGG
GGTATCTAAGTCCTTTCCCCTAGCCTTTCCATTTATTCACATCATTGTCT
ACCACTTTGTAGAGCTCAATCTCCTTTGTCGATGAGATGGGCAGCCAAAT
GTTGTAATCTAGTGAACGGTTTGGTGCTGGATGCCTGTGGTCTTGTGTCA
TGTATGTGCGGTTTCGCACACAATATGTGTACATACAGCAAGTAGAAGTA
CCTGTCGGTCTGTACTGTAAATACAGTGTATACCTGCTGTCCTCAAGTGA
TCATGGTTATCTACTGGTGTCCTGCGCATGTGCGGAAAAACTTTTCACTA
GTAGCGCCCATCCCCTCTTGTTGCAGTGCGATCCCTATTTTATAGTATCT
TGAGAAAATGTGATTTAACTTGGTCGAGTGTTCACGACGGCGCTTTTTGT
ATTTGGGTATTCATCCCCCTCCATTTTTTGCAATTTTGCTCGTAAAGTAG
GTGTGCAGCAACAATGATTGACAGCTACCACCCTCTACACCTATCTTTCT
CATACGTGTAATTCAGATTATTATTGTTCGCTACTTTGTACCTGCATACG
AACGGCGACAAAACAAGACATGAGTATTTCGAATATCGTATCTTGTATGG
AACACAAAATCATACGTGTGTACATTAGGCACGCCCTCGGACATCGTTCA
ACTGTCTGTTTCCGACTGGTATGACGGTGAAGCACGCCATGTGTCGTTCG
TCGCACTTGTGTTTCTACTGTTCACTAGCGTTACTACGGCTGCCGCGGCT
GTTGAAAAGACGGGCCGACAAGAGCAGGCCAAACGCAGTAAAGATATGCT
CCTGCATGTGTTTGTTTGTTGCACGAATTCTTCTGTCGTTCTGTGACATT
CAGACATGTACCATAGTGACAGAGCCTTCCATCTCTTCGTCGCCATTTTC
TGCCCCTGAATACACACTGATTTGCCTGGGTGGTGCGCTGCGCAGAGAAG
ATGCTGACGGAATTGACTGACTGTTGTCATGTGCTGAAACCCCCAAGTAC
TTCAATCCTCCATGTCCCTATTTCCACTTTTATAATGGGCCCGTGATGAA
TACACACGAGATTATCGCATGCAAAACTTCAGGCGGAAAGTTCTCTATAG
TACCGCATAGTGTTCTGATTTGGAAGGTGCCCGACGGGCAGCAGTGAGCA
CCTGGATGATCAAGTTGCAGTCAGTCGAAATTTGTCCTACCATATTGTAG
AGCTGTGCGTCGGTCTACATCTTCCTAGTCTCTGCACTTGCGACTGTATA
TGAAAGGGTGCGACTGATAGAAGCGTATGATGTAAACCACGGTCTCCGAT
TTTGATGCGAGCTATTTTCAAATTTGTTTGCTTCAGAAAACAGGGATGGT
AATCTGAAACATGAAAGGACACAAGGTCAAACAATAGTTCAATCGCCAGC
TGAAGAAATTGTCCCTATTCACCCTTACCAATTCAGATCCCGCCACAAAG
CTAAACCACAACTGCAAACATTATCAAAATATTAGATCGTGTGTGGAAAC
TGGCCTGGATATTCTTAATATGTGTTGTTTGGTCTGACGTCAAGCACAAG
AATTTGGCATTATCTTGAATTTTGTGTGATAAGGCCGTGTCTTGTCGAGG
CACTTTGAACTGATTTCTAGAAAAGTGCAAAAAAAAAAACGGCATCGGAA
CTATTTAGCAATAGTTTTTTGCGCCATCTCAAGCTGGTCTGAGATGCCTC
GATAATACACGACGTAAGCACAACTACAACGGGTTTGCTGTCGTCGTTTC
GAATCCCGGACGTACATTTTGTTCCGCCTCATCTCCAAAACGTTTTTGAA
TCTATATGCGGGGAAAGGTAGCTTGTTCACTCTATTTTTTCCTTGGTTAC
ATCGTTGTCGGGACTCGGGCTCTTGCACACGGGACTATCTAACGTCTGTT
TGATGAGATGTCTCACCCAGACATCGGTCTCGTCAACCATAAGGTATCGG
ATCAGGGTACATCACAGTACCGGGAAAGGGATGAGCCAAGGGAAAGATAA
GCGTTGAGAGAAGAGCAGCCGCGGATAGTTCAGCAGTACAACCCTGTGAC
GAGGGAAAGCCCAGAGTCGCAGTTGACTCAGAAGTACCTGTAAATAGAAG
GTCCCAGAGGGAGAGAGCGCACGCGCCCTCTTCCAGTTAAGTATGATAAC
AGGTTCTTCTCCTCGGACGGCGGAGGGGGCTTTGCCCGCGACCTAGATGA
CACCATATCTGTGCTGTTGCACGTTACTCAGCGCCATCAGAGCCAGTGCA
CACAAAAATCCCACCTGAAGAAACGGGGAAACACTGCATACGTCGACGTT
ACGCAATAGCGAACTGCAATTCAGACAGAAAATTCTGTGTACACAGCACC
GGCATGGTTCTGGACGCAATGACCGCAATGCTCTACAGTTATGGTCAGGT
TCCTCTGGAACCCCAAGAGTTGACAGAATGAAACACTCCCCGACTGGGAT
CAACTATTTTAGCGCCGGATGCTGTTTCAGAGCAAAAAAGGCGTCCAGCG
ACACCAAAGGCAAGGCAGTGGGGAGGGGGGTCAGTGTAGACTTGAAACTA
CGTCAAATCACAGTGTCCTGTCAAGCCCGGAAGCCAACTATGAGCTCGTG
GTGGTCAGAACGGAAACCATGAGCATGGAAGAGCTAGTCAGTCGAATCCA
ACGTAAATATGTTTCTCCTTAGACCGCGTTGCCTCAGCTTCCAATGCGTT
CGATCTTCAGTGGTCAGGGTTAGATCGTGCCGAGGGCTGTTACCCTGTAG
TTATGTTGTCCTTGAGTCAGCGTAGCATGAGATATCTGCGATTATTGCTC
TTGAACAAGTGACTGACAAATCGCGTTCGAATTTGTACAATTTAGAGTTT
TTTTTCGCAATTTCCATCACTGCACAAACCGGCCAGTTGTACTCTTGAGA
TATGTGGAGTGTCGATTAACTTATTCTGTGACGTAGGTGCATACCATATA
CAGCGCTGTGTAGCACTGCTCGCGAAATTTGCAGTTTCCTCGAGCTCATA
GACGCTGCTCCATGCCATTTTATGGGGGAAGTTCTGAGAGAAAAGTATCC
AACTGCAACCCTAGAATAGGGCTTTACCTTCGTGGTTCTGGAGTACAAAC
ACGAAATTTGTAACTATGACATGGGCAGTGGGTTCAGCCCAAATCGCAAA
CATTCGCCCATTCGACTGCGAATCAAAATCGTTATTTGACCTTCATATAA
CCAACGTATTTTGGATATTCCGATCTCCAGCTTATTCTACTGGCGCTAAT
ACTGGGTCGAAAAACAATTGGATGAGTGGTAGTTCTCTGAACAAGTCGGC
TGCGAATATCGTTTTCGGGCATGGCCATGACCTCTAAGAACGTGGTTCGT
TTGATATCATGGTATGGTGTGCGGTTTTTTGTGATAACACACACCTTCGC
ACATAGGGGTCCCTCAGTGTGTGGTTCGTGCTTCGCGTTCGTGTCAAGCG
CTGGGACTGTAATGCGCAAAACGATGCCAACTCCTATCTCCCCTTGTTGT
CTAAACAGTGGCGTCTCACTATCCTAGTGATCATGCCGTGCCTGTTGTGT
CGGAAAATAAATCCAAACTTTTTATCCTGGGTTTTCAGGTTCGGATTAGA
TGGCAACAGGTGTCGGAAGGGTTAGTTCGTAGAGTTTTCACCTCAGTTAC
ATCTCTCATTCGATTTTCATTTTCAGCTCAAGCTACAGTACCAAGAGAGT
TACTTGTCTCTGTGTGTACAATTGTTGCGGCTGGGGATAATCATAAAGGC
AAATAAACCGGGTAGCAATGCTTCCCAGGCTTGATCGCACGCTTCTGTTT
GATACATGGGTCGTGAGATATAGCTACACTACCCAGCCTCCTTCACTCCA
AGTTACCTGCTGACTCAAAATAAATGTGTCCCGCGATTGATTGGTGTGTC
CCGTACAGAAGCCTCCAGAGCCGGTTCCGTGATGGTTCTAGATCAACGTC
CATGCCGGACCCCATGAGACCCACTCCGAAGCCCAAAAGTGGTCTTTTCA
GCCGTCTAGCCTCCCGCGGGGACATACGCTTAAAAGAGGATACGTGGGCA
CCAGGTGCGTGCCGAGCATTTCTGCAGGAGTTGATGAAATGCAATTTTTG
TGTTTTAGTATGTGCAGTAGTGCTTACTTAGCACAGCGGGGGTGGGAAGG
TAATCGAAACGAGACAACGCGGTCGTCAGAATCTATGGCTGTACCACTCG
GGATTCCAAGAAGCAGTGCCTAGATGAATCGTGTAGTCCACCCGCACCGG
TAGCAAACACGGGCAAGACAGCATTTCATGTGAATTTATTTCGTGTCTTA
ATCTAAAGCACGTACTTGCGATGCTGAGGTCATGCGCTGTACATTTCAAA
GACGAGTGTACTGGTCAGTTTTAGTAAAAAATAAACAAGGGGGGCGTTCA
TCGCAATGAACGGAGCAGGTGCTTCTAGAAGGAATTCATTGGCATGGAAT
GAAACTTCCGATGTGCTCTGTCAGAAAGAAAGGGAAAAACATTTGTGTAC
ACGCTTTTTCTTCCTCGCCCCCGAACACTGGCTGTATTACTCTGTATAAG
CAAATAATCTTGTTCGTTTTTCTTGCTGCAGGTAAAGCGAGAAAAGCAAA
TCGCCCTCCAATCCCTGCCTTATTGGCGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2945:10489..16119-

>mRNA_H-paniculata_contig2945.8019.1 ID=mRNA_H-paniculata_contig2945.8019.1|Name=mRNA_H-paniculata_contig2945.8019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig2945:10489..16119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCAGGCGGAGGCGGTGGTCCAGGAAGGGATCGATCTTCGCCTCT
GACTACCTCTGGACGACGCAGATGGCCGCAGGCGGAGGCGGTGGTCCAGG
AAGGGATCGATCTTCGCCTCTGACTACCTCTGGACGACGCAGAAGCCTCC
AGAGCCGGTTCCGTGATGGTTCTAGATCAACGTCCATGCCGGACCCCATG
AGACCCACTCCGAAGCCCAAAAGTGGTCTTTTCAGCCGTCTAGCCTCCCG
CGGGGACATACGCTTAAAAGAGGATACGTGGGCACCAGAAGCCTCCAGAG
CCGGTTCCGTGATGGTTCTAGATCAACGTCCATGCCGGACCCCATGAGAC
CCACTCCGAAGCCCAAAAGTGGTCTTTTCAGCCGTCTAGCCTCCCGCGGG
GACATACGCTTAAAAGAGGATACGTGGGCACCAGGTAAAGCGAGAAAAGC
AAATCGCCCTCCAATCCCTGCCTTATTGGCGCCGGTAAAGCGAGAAAAGC
AAATCGCCCTCCAATCCCTGCCTTATTGGCGCCG
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