mRNA_H-paniculata_contig2944.8014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2944.8014.1
Unique NamemRNA_H-paniculata_contig2944.8014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2944.8014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2944contigH-paniculata_contig2944:14980..17822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size602
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2944.8014.1prot_H-paniculata_contig2944.8014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2944 15251..17822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.2981248-UTR-H-paniculata_contig2944:14979..152501622929900.2981248-UTR-H-paniculata_contig2944:14979..15250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2944 14980..15250 +
1691481061.2738934-UTR-H-paniculata_contig2944:14979..152501691481061.2738934-UTR-H-paniculata_contig2944:14979..15250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2944 14980..15250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.3331213-CDS-H-paniculata_contig2944:15250..154841622929900.3331213-CDS-H-paniculata_contig2944:15250..15484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2944 15251..15484 +
1691481061.2834282-CDS-H-paniculata_contig2944:15250..154841691481061.2834282-CDS-H-paniculata_contig2944:15250..15484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2944 15251..15484 +
1622929900.3511674-CDS-H-paniculata_contig2944:17726..178221622929900.3511674-CDS-H-paniculata_contig2944:17726..17822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2944 17727..17822 +
1691481061.2924328-CDS-H-paniculata_contig2944:17726..178221691481061.2924328-CDS-H-paniculata_contig2944:17726..17822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2944 17727..17822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2944.8014.1

>prot_H-paniculata_contig2944.8014.1 ID=prot_H-paniculata_contig2944.8014.1|Name=mRNA_H-paniculata_contig2944.8014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MSSTNLMRSIRRTVYGAGTRVIGSDTQSIMGLCPASPLSGCRYRAGAGAV
PAKASGRGQGKGLLLSRLMSSNSSDSDQGRGNEKTFAEENLDHAPEDLSA
NLKNVVDDLA
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mRNA from alignment at H-paniculata_contig2944:14980..17822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2944.8014.1 ID=mRNA_H-paniculata_contig2944.8014.1|Name=mRNA_H-paniculata_contig2944.8014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2843bp|location=Sequence derived from alignment at H-paniculata_contig2944:14980..17822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTCTCCTTGTTCAGTAATCGCGCGTTGCCTTGCAAGGTGATAGTAA
GCTTGCCTTGGCTCAGCACGAGCCAGTGCTGTTGTCTCCCATAGTTGTGG
CAATATTCGTGTATTCGTCTGTCTTTGACAGCGAGTATAGAGGGAAGTAA
GTACTTTTCTATACTGTGCTGTACGGTACTAGACGATTCCTGAGCTGTAC
GTGTTCCCTCTACAGTAGTACAGGTACACCCCCGCACAGGGGTGCTAGAC
GCTAGAGGTACATAGCACAGCATGTCGTCTACTAACCTCATGCGATCTAT
TAGGCGTACCGTGTATGGTGCAGGCACCCGAGTCATTGGTAGTGACACTC
AAAGCATAATGGGGCTGTGTCCAGCTTCGCCGCTCAGCGGTTGTCGTTAT
CGTGCTGGTGCTGGTGCTGTGCCTGCTAAGGCTTCAGGAAGGGGACAGGG
TAAAGGATTGCTGCTAAGCCGGCTCATGTCGTCGAACTCCAGCGACAGTG
ACCAGGTGAAGGAATCAATAAGTTTCATATGTGTTTGAAATGTCTACGTG
TCTATCTCTCACGCTATCGTACAGTGGTACAGTCTGTCTATCTCTCATCG
TATCCGTCTATTCTGTCTGTGTCTTTTCTGTCTGTGTTTTATCTGTCTGT
GTTTTATCTGTCTGTGTCTTATCTGTCTGTGTCTTATCTGTCTGTGTCTT
ATCTGTCTGTGTCTTATCTGTCTGTGTCTTATCTGTCTGTGTCTTATCTG
TCTGTGTCTTATCTGTCTGTGTCTTATCTGTATGTGTCTTATCTGTCTGT
CTGTCTGTGTCATTCATGTCATGATTTCGTGAACAGTACAAAAATATGTA
ACTGCCTTCTCCTTCATGATATTGATATCGTTAGTAGATCTCGAGATTTC
TGGCAAAAAGGTGTATTGGAGTGTATGACCTCTTTGAGCCCCAAATTCGT
TTTTGCCGGATTTATCGTGATCTACGACCCTATATCTAAAGCCTCCATAT
CTGTAAGGCTAAAAAATAGCTATTTTGATGTTGCTGTTTACACTGTATGT
GCAAAATTTCATTGTTTTATTCTTCGAAATGCCGAGGATAGAAATCATAA
TGAAATTTCAGGCGTGTTTTGGTTTCATTATTCATCGCTCTTGAACCTTT
AGATTTTTTTGCATTGCTTGACTCTTTTCACGAAGTAACGGAAAGTGTTT
TTTGCTCTTTTTCACAATCAAAGACGAATGTGCAATGTACAAAATGCGAA
GGGTAGACTCGAGAATCGAGAATCGAGAATCATGTGATTTCATGTCAGCT
TCCCAAACACGAATTGCATTTCACCGCCGCACATTCATAGACTTGAACAC
TTGAACACTAAGATGAAATCACGATTTCGACATTAGACCACCCTATACTT
GAAACGATACAAGGTCCTCGTGTTTTCGGAACAGCTTTTGACGTCTGTAC
TAGAGTAAGTGCTGGAAATCGAATCTTGGTTCGAAGAGAGCGAGCCATGT
TGCCTGCGTGGAGAACGAAGCACGAAGTGCACGGGCAAGCGTAGCGTAAG
TTGGGCGTGCTTCTAATCCTAAATACTAGTAGTTCCCGTGGACGATCGTC
AGCGTTGGAGCTGTTTACAAACCCCAAAGCTATTAGTGTAAACATGTTCT
TCGAAACCAGAGGATGGCATATGTTACCGCGCTGTCGCCTTCGCTCTCGG
TGAGAGCGAAATGTGCAGCTGTTTCCAGTGTAGAGGTGAAGCAGTACAAT
AACCGCCGAACGTCCACCGGCCCAAAAGCCTCCTCTCTCGATTGCATTTT
TTCTCGTGTCTTATGAGATGCAGCACAGACGTACAACAAAGTATGCCAGA
CGATGATATCGAAGCCTAAAACGAGTTTGGATGAGTCATGCAGCAGTGAA
GTAATTATGGCTAAAAATTGCTGAAGGCCTATCAGTGGAAAATCAAGAGG
AAAAAGATCTAAACTTGGAGAGTAGATTTTTTCAAGACCCCTCGAGCCGA
AAACCATGGATACTCTGTGTGAAAAATATCGAGTCAAAGTTGTGTCCACG
TTGGCAAGGTTTACCGATATTACTGGATTACTTAATACCTTTATTATTTT
TTTTGAGAAATATCAAATTTATGATATGATTGTTCACGATTACACGGTTA
CTGAGTCCTGAAAAGACGAATTGCCGCAATCTCGTCACTCGCCTTTTCTT
CACAAATACACACAGATATGGTATGTGCATTCAGGAGGTGGTGTCCGCTT
CGGCGCCGATTCACGTACGTCAACTGGAAATGAAAAATTGCGTATGTTGA
CCCTGCTGATAGCGGCATGTCCGAATTACCTATCTAAACCCATATCACGT
ACGTCACAATGACGACACGTGGGGGGAATTATGTGGTCGTGTAAAAAGGG
GAGTGTGAAAGCACCTGGCTAGAGACCGATGGGGCTGGCACGCGCCGTTC
CGCAGACCGTTGCCCGACTCTCATTTTTTTTTTTTTTTTTCTCCAATTCG
TGGCCGAAGGGTGAAGGTAAAGGGTATTCGATATTGGACACAGAGAACAT
ACGCAATGCCACACATTCCACGTGACTTCGAGTGCGCTAAGCTCTCCATC
TGTCTTTGTTTCTGTTTGTATTGTGTCTCTTGTTTGCCTTCGTCCTTCGT
CCTTCTTGCCTACTTGTTATAAATTACTTCGTGATTGCGGACGTATTGAA
TCGAATCGTGGGATCGTCATGAATGCTCAATGTTGGGGTGATTTCAGGGA
CGTGGCAATGAGAAGACCTTTGCTGAAGAAAACCTGGACCATGCACCAGA
AGATCTGTCTGCAAACTTGAAGAATGTGGTTGACGATTTGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2944:14980..17822+

>mRNA_H-paniculata_contig2944.8014.1 ID=mRNA_H-paniculata_contig2944.8014.1|Name=mRNA_H-paniculata_contig2944.8014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig2944:14980..17822+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCTACTAACCTCATGCGATCTATTAGGCGTACCGTGTATGGTGC
AGGCACCCGAGTCATTGGTAGTGACACTCAAAGCATAATGGGGCTGTGTC
CAGCTTCGCCGCTCAGCGGTTGTCGTTATCGTGCTGGTGCTGGTGCTGTG
CCTGCTAAGGCTTCAGGAAGGGGACAGGGTAAAGGATTGCTGCTAAGCCG
GCTCATGTCGTCGAACTCCAGCGACAGTGACCAGATGTCGTCTACTAACC
TCATGCGATCTATTAGGCGTACCGTGTATGGTGCAGGCACCCGAGTCATT
GGTAGTGACACTCAAAGCATAATGGGGCTGTGTCCAGCTTCGCCGCTCAG
CGGTTGTCGTTATCGTGCTGGTGCTGGTGCTGTGCCTGCTAAGGCTTCAG
GAAGGGGACAGGGTAAAGGATTGCTGCTAAGCCGGCTCATGTCGTCGAAC
TCCAGCGACAGTGACCAGGGACGTGGCAATGAGAAGACCTTTGCTGAAGA
AAACCTGGACCATGCACCAGAAGATCTGTCTGCAAACTTGAAGAATGTGG
TTGACGATTTGGCAGGACGTGGCAATGAGAAGACCTTTGCTGAAGAAAAC
CTGGACCATGCACCAGAAGATCTGTCTGCAAACTTGAAGAATGTGGTTGA
CGATTTGGCA
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