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Homology
BLAST of mRNA_H-paniculata_contig29429.8012.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.170e-13 Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query: 102 KAARTLVHRAVQEVFPFVKTTTERRQGGDGDDVTVVCSQGATLPKLRELLSTDDVEALQR 281
KAAR VHRAVQE FPF+KTTTE+ G VTVVC+Q + LP LR LLS D+EALQR
Sbjct: 210 KAARARVHRAVQETFPFIKTTTEKAPDGS---VTVVCTQASPLPALRGLLSGPDLEALQR 266
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 73.6 |
| Seed ortholog evalue | 5.2e-11 |
| Seed eggNOG ortholog | 2880.D8LTL8 |
| KEGG ko | ko:K06176 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | pseudouridine synthase activity |
| EggNOG OGs | COG0585@1,KOG2339@2759 |
| EC | 5.4.99.27 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03016 |
| Exons | 2 |
| Model size | 302 |
| Cds size | 258 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29429.8012.1 >prot_H-paniculata_contig29429.8012.1 ID=prot_H-paniculata_contig29429.8012.1|Name=mRNA_H-paniculata_contig29429.8012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MTEEDTAGGPLLVRIMVEGGGGTGGKAARTLVHRAVQEVFPFVKTTTERR
QGGDGDDVTVVCSQGATLPKLRELLSTDDVEALQR* back to topmRNA from alignment at H-paniculata_contig29429:159..2433+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig29429.8012.1 ID=mRNA_H-paniculata_contig29429.8012.1|Name=mRNA_H-paniculata_contig29429.8012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-paniculata_contig29429:159..2433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGTCAGAGACGGCAACGGATTTGATGACCGAGGAAGACACTGCAGGT
GGCCCTCTCCTGGTTAGAATCATGGTGGAAGGAGGGGGTGGCACTGGAGG
TAAGGCCGCGCGAACTTTGGTCCACCGAGCTGTACAGGAGGTGTTTCCTT
TCGTTAAGGTGGGTGAACGGGGGACGGGACGGACGGATTGGGTCGAGTAT
AGTGCAAGATTGTTTCCCCGATTCGGATAGTGATTTGGGTGCAGCCGGAT
TCGACTGTTTCGGATTGAAATTTGGATTTAAAAAATCGGAACACGATTGT
ATCTGTTGAAAAATAAAGGATAAAGGACAGCGCGACGTTTATAGAACAAC
GGTGACAACCCCCCGACAACAAGCACAAAAAACAAATTGGGGGAGACGCT
TACGTCTCGGCATCTTCCTTGACCTACCTCAAAAACTCGCAGACGACAAA
ACGCTCTTCCTTCTCTCTTTATAGTTGCCACAAGCGCGGGCCCTACCATA
AGGGCGCCTCTTTGGCCGTTCCTGTCTATATATATACTGATCGATTAAAC
ATGAAGCGACGAGGCAGCTTGGCTTTCAACCGTTCTGGTCAAGCCAGTAA
CCGATTTTGTGCAGATTTCTTGACCGTTTCCAGCTGTAGCTATAACCGGT
TTAGTCCGACACAAGACGTGCCAGAAAATCTGGCTGACTGTTCAACCATG
AGTTTACCGATTGGCTGCCCGACAGAGTGCATCAAACTACCCGCGCAACT
GATCGGAGAAGGTGCAGAGAGGCATGTGCCCACCCCCCGAATTTATCTTT
TTGCTTGTTTTTGGAGGTGTTGGCACCGTTGTTCCAAGTGCATCTTTCCC
ATCATCACCTTTTTTAGTCGTAAAAGAGGCCGATAATAGCGGGTTTTGTC
CTTTTCCCAAAAATACATAAAAACTAAATATATGGATGAATGTAGCGCGC
TCCAGTGGTCGTTATGCGCAGTACCATACCAACTATGTCTCCGTGGGATG
TACGGCCTAGATGCTTGTACAAATACATCAAAAGTGGGGGGATTGAGGTA
AGTATGATATATATATATATATATGTGTGTGTGTGTGTGTGTACATAGTG
TGCCCACAAGTGTCAGTTTTCGTTCGCGCCTGGTGTGTCATGGGATTCGG
TTCCGATTCGGTGGAGAAGTTAGAAAAATCTCTTTTTTTTTTTCTTTTTT
TTTTTCTTTTTTTTTTGCCGTCACGAAGCTTCAAGTGTGATAATGACTGT
AGCTCTAGTGTTACCGTAATTGAAGGGCGTTATATATACTGGATTTGGCT
GTCTGAGTAGCGGTAACTATCTATCCCCCTTATGATATGATAAGATATTT
GGATCCTTGTTTTATCCTAGGGTGTTTTTAGGCTCGGGGTTGGATGAGGA
TTAAACTCTAGGTAGAGAGAGAGACCGACGTCCATAGAGGGTGTACACTC
TGGGGTGGAAAGACCGACGTCCAAAGAATCCTGTTGTATAATTTTCTCCT
TTTTTTTTTTTTTTTTTTGTTCCCAATATCGAGATACTTGGTTACTTCTA
TAGAGAGCTAGAATAGCTGCGGAATGAACGCACACGGTAGGACAGATTTG
CCAGAAAAAAACTGAAAATTCTGAAAGGGTTGAAGTAAAAAAGCATCATG
GTCGTGATTATTATGAAGCGAGGGACGTACGGGGTGGGAAGAGGGAGGAC
GTATTCATGTGTTTCATGCCGTAGTTATTTTGGCCATAGACCACGCGTTC
TCGCGAGGACGGAGCTTTGTTCCTATCAGAGCGATTCCTCGGGAGGGGGG
GGAGACGGGGGCTAGGTCGACGTACGCAGTAAATTAGATATCTGCACGAT
TGGATTTGCCGAAGGTAGACAGTGTTGTTTTTCTCTTGCCTTGGCACGAC
GATATAGGTCACCGACCGAATGCTCATTGTGCTCAAGCGTTGTATCATCG
TCCTTCTTTGCATTATCGAACGTCCTTTGTATATACATATACCCACATTT
ATGAGATGATCTAAGTCGTCCTGTCACTGCTATTCGCACTCTTGAACCGC
TCTTGTTGATGCCCCGTGTTTATGCGCGCGCGCGGGGGGGGGGGGTCATT
TCGGGGGTATTTTATCTCCACTCCTTTGCAGACAACGACCGAGAGAAGAC
AGGGTGGTGACGGGGATGACGTCACTGTGGTGTGCTCGCAGGGGGCAACC
CTTCCTAAACTCCGCGAGTTGCTCTCGACTGATGATGTGGAGGCTCTACA
GAGGTAGCTAGGTACACGTTTAGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig29429:159..2433+ >mRNA_H-paniculata_contig29429.8012.1 ID=mRNA_H-paniculata_contig29429.8012.1|Name=mRNA_H-paniculata_contig29429.8012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig29429:159..2433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGAGGAAGACACTGCAGGTGGCCCTCTCCTGGTTAGAATCATGGT
GGAAGGAGGGGGTGGCACTGGAGGTAAGGCCGCGCGAACTTTGGTCCACC
GAGCTGTACAGGAGGTGTTTCCTTTCGTTAAGATGACCGAGGAAGACACT
GCAGGTGGCCCTCTCCTGGTTAGAATCATGGTGGAAGGAGGGGGTGGCAC
TGGAGGTAAGGCCGCGCGAACTTTGGTCCACCGAGCTGTACAGGAGGTGT
TTCCTTTCGTTAAGACAACGACCGAGAGAAGACAGGGTGGTGACGGGGAT
GACGTCACTGTGGTGTGCTCGCAGGGGGCAACCCTTCCTAAACTCCGCGA
GTTGCTCTCGACTGATGATGTGGAGGCTCTACAGAGGTAGACAACGACCG
AGAGAAGACAGGGTGGTGACGGGGATGACGTCACTGTGGTGTGCTCGCAG
GGGGCAACCCTTCCTAAACTCCGCGAGTTGCTCTCGACTGATGATGTGGA
GGCTCTACAGAGGTAG back to top
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