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Homology
BLAST of mRNA_H-paniculata_contig2937.8003.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.090e-29 Identity = 92/312 (29.49%), Postives = 150/312 (48.08%), Query Frame = 1
Query: 1981 LGVPYASALPPGKKRLPKGVGPELRSSLKLVTNIPDNFGRVYENNWTHGDTLSLRSTSRSGRPSDFTPTQHATIRKVNAANRIPTLDQLSAELAEFGLLAGSSKLQRWLKEMGATRVKWHITPFLSLAHRKNRVDFILD*AGNNCITFRSGFQTIHIDEAWFYLIRDRDRVRMFPG----GKGGVHHESTAQE------------SHS*-GDVHMRRFA-FRSFPRFRRQDWNLACSRHQAGTEEFDPA*SGAAL*VPRDH*--CRVVPGVVQG--LGLFSSSIERKMPWLEGEEVVAQQDGATPHTGKDTP 2850
+ V A + PG R+PKGV + + P + + + L L + RSGRPS TP++ A ++ VN+ NR TL Q+S +L + GL G ++RW ++GA + I P LS A +++R+DFI D + +H+DE+WFYL+R++++VR+F G G V HES + +H G + + R + R ++ + ++G E + A+ V ++ C + + + + +I+ KMPWL + VV QQDGA+PHTGK P
Sbjct: 1 MAVEIAMGIQPGFSRIPKGVLDPICERYGVGKKYPSELWKRVKTQIDNTQELDLSNEERSGRPSLLTPSKIAALKTVNSQNRSSTLRQVSDQLTDLGLEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAI-VQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNP 311
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 2991 |
| Cds size | 801 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2937.8003.1 >prot_H-paniculata_contig2937.8003.1 ID=prot_H-paniculata_contig2937.8003.1|Name=mRNA_H-paniculata_contig2937.8003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
MDWPAGKNGGATAFKQSLGVYMLDGETSKSSAEIHVPYSRIQDDLDGHTD
TNIVHWVFLSIGRTVKKYLDKEDQAFYSALTMSTVDMRTSSATTPILSSS
SSPSDAGEAESVVFGKLFLEITQDALSLQTLEDINPIDIEGFFGTIGGIW
EIMMLAWGLIFVSSATAPQHLKIRDFTAPLKRAQGILLSRGGEQKAEDEV
RPAWDTTATRMENGTLMNTRRPSVTSLNLRTADWNLPMADELPWPTDGSQ
RWKGARRHHSHGYITR* back to topmRNA from alignment at H-paniculata_contig2937:7727..14155- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2937.8003.1 ID=mRNA_H-paniculata_contig2937.8003.1|Name=mRNA_H-paniculata_contig2937.8003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6429bp|location=Sequence derived from alignment at H-paniculata_contig2937:7727..14155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCATTAGCTGTTCACCATACTGGTCAAGGTGCCCTTAACGCTAGCGT
GGGAGTACGGTTGAGCCTATGTAGAGTATCCATCTGCGAAGAAATGAATA
CCCCTTGCTCGCTTTGCACCCCCTCCTTCACCAGGAAAAACGGACTACCT
GCCTCGAGTTCGACCTATCTTCATTCGAGGTTGGAGAGGGCGATCAGAGC
GTTTCGTCTCCGACAAGCGCTGTAATCGAAGTGAGTACAAATGATCGAAC
ACCACGGATTGCGTCAGAACAACTTCCTTGTTGAGGTCAAAATGAAGAGC
GCAAATTGTGTTCGGTGGGTGACAAGGAACGAGCTTTGTACCCAAACCAG
TACTCAGTTGTTCGTGTACGCCTCTGGTTCATGATAGTCAACTACCGATG
TTAGAGAACAGTAGGCATTAACAATCATTGGCTCGCCACGCTGTATATTT
CTCATGTACTTCCGAAATGTGGTGCCTATCCCTTCGTTGGCTCGCAGATG
GATTGGCCCGCCGGCAAAAATGGTGGGGCTACAGCTTTCAAGTGAGCGAC
GAGCGTCTACGCGACGCGATCGACCAGTCCGGGCTCATTTGACTGCGTTC
GAAACTTGCTCTTAGCTGATGTGGATAGCCTGACTGAGACGTTTGAAATC
ACCCACGACTTGGTTCAATTTGGATATGTTGCTAGTCCGGGCGGATATCG
ATCAGACGAAACCCTAGGGCTGGGTGCACAGCGTGGAGTGGGGGTGACTA
CGTCGCGCCCGTTCCTTCGGGGCCATCCCCGGCGGCGCCACGCTTTCATA
GCATGCACAGGATTATCTTCCCCTCCGAACGCTCCTCGTTTCGTTTCAAC
GTTTTCCGGGGCCTTTTTCCTTACCCAGCCCGAAACGGATCCGTTGTCCG
GAATCCTGACTCCGTTCCTTGTTTTACCGCCATGTACAGGCAAAGCTTGG
GTGTCTACATGTTGGATGGAGAAACGAGTAAATCCTCTGCCGAAATTCAC
GTGCCGTACAGCCGAATACAGGACGACCTGGACGGCCATACCGACACCAA
CATCGTTCACTGGGTTTTCCTTGTAAGTCACAGGTGGTACACCATCTGTA
ATTCCGCGACATGTAAAGGAAATGAAATTGTTGTCAAGAGTAAAAATATG
GCATGCCGATAGCCTAGTCATTTCCTCGTATCCCACACGCAGAATGTTTA
AATGTGGGGTTTTGTTTGCGTAACGGTTGCGTGGCGTGTCGGTATCAAGG
GAGGTTGGTTGTTATTTGGCTGCTTTCTTTTAGTTTTGGGAAGACAAAGG
GTGTAAACATTTCAGATATAGAGTGGACCCCTAGTTGCTTGGAAGGGACG
ACCTCTTTCTGGATAATTTGAAGGAGATAGCGTACGGTACTGTAGTTCCT
TCCCTCTAAGAAGCCATTCAAAAGAACTGAACGTCGATGGACTCGGTGGT
CTATTTCAACTATTGCATGCTTTGCAAAGTTAAACCCCGCCCCCTCGCTA
ACAATCATTACGGGTGCTCCTGCGTCAAGAACCGTACGACTTCACTTATT
AACATTTATTCCATTGTTGCTTCCGTGTCATGTTTGCCAATCAATACAGA
GCATCGGTCGGACGGTCAAGAAATACCTGGATAAAGAAGACCAAGCGTTC
TACTCTGCGTTGACCATGTCCACAGTGGACATGAGGACATCCTCCGCGAC
GGTGAGAAATGGCAGAGAGTGGGGAAGAGGTGCAAAGAAAGAGAGGGGAT
GGAGGTAGAGAGAAAGAGAGAGGGGGGAGGGGGGGGGGTGCCACGGACGA
TTAAAGTGCAATTGGAGTCTTCATTTTGAGTCTATCTCTGTTACCCCTTA
CCACAACCTCCCGACAATATCTCAACACTACCCCATTTTGCTTTGTTGTA
CCTTGCCGATGTTGTTAATGTGGGGATTCCCCAGTTGAAACAGCAGCTGA
CGTAACGCATCTTATCTGCATTGCTTGTCCGAATACAATAGAAAAAGAAT
AATGGAAAACGGAGCGAAAATGGCCAAGAAATGAGCAAAAAAACAGCTTA
CCGTATCAGTGTACCACATAGCCTTAGTCATACTTCATGCAGATCTTTGT
GACACGATAATTCGCTAGAACTACATTGTTTTTAAACCAAACTTTTTCGT
ACATGATCTTGGACACTATGCCGATGTGGCCCGTTGGGAAATTCGTTTTT
TCGTTTCTCATCTCGAATTATTGGTGGAACTCCAGATTTTTCATATATGT
TTTAGTATTGAATTTCAAACAATTAAATGCCATTTTTCCTGACTTTTGTC
GTTTTTTCGCCAAATTCACTCTTTTGGCCGATAGCCTCAGAACAAACGTT
TTAGCCCTTGCACAGACAAGGCCTATGCAAAAATTCGCGTTATGTTTGTC
GTTCTAAATCTCGAGATATGGCGTCGGATCAAGTACTATATCACTCTGTA
GTAGTGTTCAGTGAATGCACCACTAGATTGGGGAATCCCTCCCTTTGTGA
CCTCAAATTTTCGACGAAATTATCGTTCTCAGTAAATAGAACAGATTTCA
AAATGAGCGTGCCCTCCTCCGGTTTCCTGTGCTAACGAACAGACCCCGAT
ATTATCCTCAAGCTCCAGCCCGTCGGATGCGGGTGAAGCGGAGTCCGTTG
TGTTCGGCAAACTCTTTCTGGAAATCACGCAAGATGCTCTTTCGCTCCAA
ACATTGGAGGATATCAACCCGATCGATATTGAGGGCTTCTTCGGGACAAT
AGGCGGCATATGGGGTAAGTATGTACGCACTCGAAATCTTACGTATGGTA
AGGAGGGTAGCGACTTAACGCTTACTACGTGAAGATTGAGTCAATGACGG
CATGATGCATCGTTTTGATTATATGCCTGTACTATCACTCCTGAGATAGT
ACAGATGAAAACGACTCAAGAGTGACAAAGGGTAAGCCATGTACATAAAT
ATTAGCTCTAATGGCAGGATCGACTTCCAGCTATCAACTACCTTGAGTGC
GATCGAATGTCCCCTGCAGGTACGGGCTAGGAGGTTATGGATAACACATA
CGCAGTCCTCGCTACAAGTTCAAAGTAGAATTCCCTGTTTAATGGTGCCA
TGTTTGGATACAACGATCGAGCTTGCTTGTCTGTTCCCCCCCGTTAATTC
AGAAATCATGATGCTGGCGTGGGGACTGATATTCGTGTCCAGCGCTACGG
CGCCTCAACACCTAAAAATCCGCGATTTCACTGCGCCCTTGAAGAGGGCG
CAAGGAATACTGCTCTCCCGGGGAGGAGAGCAAAAGGCGGAAGATGAAGT
CCGACCAGCGTGGGATACTACTGCGACACGTATGGAGAACGGAACGTTAA
TGGTGAGAAATCTTACATATACTTCACTAATAGCTACTGAGCTAACGCCC
AGCGCTAACTGATGGCTCAATGGAGGTCTTGGCATGATTTGCCGAACCGA
GCTTGGCACCGTGCATAGTAAGTAGTACATCATCAAGCGTTGCCAGAGCG
TATTTCTGACCTAACTAGGTTGCGAGAGCACGAGCAACACCATCATATAT
ATATATATATATACATTCTAAAGGCAACCAAGATATTAACGGACATCTGT
CGATTCATACGTACGAAGGCAAAGAGCGTATTTGTACGTCGTTGCGATAC
TACCATGATTCGTGGTGCCAAATTCGTTTTAGCACATGACTGTAATGCCA
AACCCCGACTCAATGGTCATGACCACGAATTCTATTTCATAAGAGCTTTA
AGTCATCCCGGCTATTGATTTATATGAACCCGGGTTCACTCAGGGTTGTA
AGTCCTTTAATCAGCTTCCCTTGCTCCATCCCGAGCATGGTGAGTAACTG
TTGTTCTCCTTGAAAGGAGCGCATGGCTAGTCCATTATTTGCGAGGAACT
ATTTTGAGAGGCATAATGGAATACAGAGAGGCAACATAATTTTGTTGTGG
CACCAGAGACTCATGAATGTATGAAATAACAGAAGCGTCCTCACCGTTTA
ATTACACTGAATAGTAGAAGCATGGATTACGAGGGGAGAAAACGACAAGG
CTTGATAGAAATAATATCTATACAAAAGCATTGGCACAGAAGGGATTCAA
ATCTCTGCGTATTTAAATAGCATGAGACCATTTTTCCGCACGAGCGTTCC
AGGATATGCCGCAATAGGTGGTACTGGTACAAGTGGTTGCATATTCCCGC
GTATCGGTGACCTGTACCCCACGGAACATGGTCAGGGTACACATAATCCT
ATCGTAAAATAAGACGAAGCGTGAACCTCGAAAACTCTCTGGCACATTTG
CGTTGCGTCACTTTCACAGAACACGAGAAGGCCAAGCGTGACCAGCCTCA
ATCTCCGAACAGCCGACTGGAACCTTCCGATGGCCGACGAGTTACCTTGG
CCAACTGACGGAAGTCAAAGATGGAAGGGAGCTCGACGGCATCATAGCCA
CGGTTACATCACACGGTGAACACGCAACAGGGACCGACTGCAACCGTCCG
ATGGCCGACGAACTCCCTCGGTCAACTGACGAAAGTCGAAGATGGAAGGG
ATTTCGACGGCATCATAGCCACGTTTAGATAACACGATGAGCACGAGAAA
GCGACCTTGTTGAATGAACTCAAGGAGTAGAGAAGAAGCGTGATTTTTTT
TGTATACAAACATTTAACAACGGCAAGACTTTTGCATGTATCTTCTGTGT
ATCATGCATGTACTCCGTCCCATAAGTCTGCGACGTTATGATTTCTCATT
TCTTGTGTAGGTCGTTTCTCTATGATTACGAAGATCTTTCGGTCATGTAT
GGGTTGAATTGAACCTATGAACGTAAACTTTAGGAAGAATTATTTCGTTC
TAGCATATTGTTCTGAAATAGTTCCGAACATTTCGCGAGAAGGGGAACTA
AGAAAACGACCCTTTTCGGCTCCATTTTGAGTGGCTGCGCTGCGCCCGGC
GGCGGACAAAGCGCCCCCCCTATCGTCACACAACATCTCAGCACCTCGCC
AAGAGCTGTAGGAGTCTCCTGCAGCCTCCAGACCGTCTGCAGCGCGAGTT
TCGCAACCAATATTACCACTCAGGCGAGTCCGGCATCTTTTGCCGAGAGC
GCATCAACCCGGGGTAAGAATTGCGAGCTGAGCGAGGAAGGTCGAAACGC
GTTGGGCGTACCGTACGCTTCAGCGCTACCTCCCGGTAAGAAACGGCTTC
CGAAAGGCGTAGGACCAGAGTTGCGGAGCAGTTTGAAGTTGGTGACCAAC
ATTCCAGACAACTTTGGGCGCGTGTACGAGAATAACTGGACCCATGGCGA
CACCCTTTCGCTTAGATCAACGTCACGAAGCGGGCGGCCGTCGGACTTCA
CACCCACACAGCACGCCACGATTCGAAAGGTCAACGCCGCGAATCGAATC
CCGACCCTCGATCAACTGTCTGCCGAGCTAGCCGAATTTGGTCTCCTAGC
CGGCAGCTCAAAGCTTCAGCGATGGCTCAAAGAGATGGGCGCCACGAGAG
TGAAATGGCACATTACCCCATTTCTGTCGCTGGCGCACCGAAAGAACCGG
GTAGACTTCATCCTGGACTAAGCAGGAAATAACTGCATCACTTTCAGGAG
CGGCTTCCAAACAATTCACATCGACGAAGCCTGGTTTTACCTAATTCGTG
ACAGGGATCGCGTCCGCATGTTCCCGGGAGGAAAGGGTGGGGTCCACCAC
GAAAGTACAGCACAAGAGTCACATTCCTGAGGTGATGTTCATATGCGCCG
TTTCGCGTTCAGATCCTTCCCCCGATTTCGACGGCAAGATTGGAATCTAG
CGTGTTCGCGTCATCAAGCAGGCACAGAGGAATTCGACCCGGCGTGATCG
GGGGCAGCATTATGAGTTCCACGTGACCATTGATGCCGAGTGGTACCAGG
AGTTGTACAAGGACTGGGACTATTTTCTTCCAGCATTGAAAGGAAGATGC
CGTGGTTGGAGGGTGAGGAAGTGGTCGCGCAGCAGGACGGAGCGACCCCC
CATACAGGGAAAGACACGCCTTATTAACGATTTGGGATTCTTTGAATCTC
TGGAAAGTAGGGTTTAGAGGGTGCGTTACGGTATGATAGACAGCGGTGTG
GAGGGGGTAAAGAGCATATACGATGCGTACGACGCGGCAACTTTAAAGAG
GGTGTTGCAGAGCCTCTTCTCTTTACGGGGTACAACCAAGTCTTGAAGGC
GCTAGAAGGCAAGGATTTCGAGGTATAGCACATCGAAACCAAGAAGGCAA
CGTGCGGGTAGTCTGCCAAAATCGGTTAAAATTGACCGTGAGGCTTTCGA
CGCGGCGGTAGAATGGTGGATTGGTGGGAACGAGGAAAACTGCGAAACAT
ACAATTATGGCAAAAAACATCAAGGAATCCGACGCAAAAAAACGTTTTTG
ATTCGGAGGTCATTGCAACACGTTACACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2937:7727..14155- >mRNA_H-paniculata_contig2937.8003.1 ID=mRNA_H-paniculata_contig2937.8003.1|Name=mRNA_H-paniculata_contig2937.8003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig2937:7727..14155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTGGCCCGCCGGCAAAAATGGTGGGGCTACAGCTTTCAAATGGAT
TGGCCCGCCGGCAAAAATGGTGGGGCTACAGCTTTCAAGCAAAGCTTGGG
TGTCTACATGTTGGATGGAGAAACGAGTAAATCCTCTGCCGAAATTCACG
TGCCGTACAGCCGAATACAGGACGACCTGGACGGCCATACCGACACCAAC
ATCGTTCACTGGGTTTTCCTTGCAAAGCTTGGGTGTCTACATGTTGGATG
GAGAAACGAGTAAATCCTCTGCCGAAATTCACGTGCCGTACAGCCGAATA
CAGGACGACCTGGACGGCCATACCGACACCAACATCGTTCACTGGGTTTT
CCTTAGCATCGGTCGGACGGTCAAGAAATACCTGGATAAAGAAGACCAAG
CGTTCTACTCTGCGTTGACCATGTCCACAGTGGACATGAGGACATCCTCC
GCGACGAGCATCGGTCGGACGGTCAAGAAATACCTGGATAAAGAAGACCA
AGCGTTCTACTCTGCGTTGACCATGTCCACAGTGGACATGAGGACATCCT
CCGCGACGACCCCGATATTATCCTCAAGCTCCAGCCCGTCGGATGCGGGT
GAAGCGGAGTCCGTTGTGTTCGGCAAACTCTTTCTGGAAATCACGCAAGA
TGCTCTTTCGCTCCAAACATTGGAGGATATCAACCCGATCGATATTGAGG
GCTTCTTCGGGACAATAGGCGGCATATGGGACCCCGATATTATCCTCAAG
CTCCAGCCCGTCGGATGCGGGTGAAGCGGAGTCCGTTGTGTTCGGCAAAC
TCTTTCTGGAAATCACGCAAGATGCTCTTTCGCTCCAAACATTGGAGGAT
ATCAACCCGATCGATATTGAGGGCTTCTTCGGGACAATAGGCGGCATATG
GGAAATCATGATGCTGGCGTGGGGACTGATATTCGTGTCCAGCGCTACGG
CGCCTCAACACCTAAAAATCCGCGATTTCACTGCGCCCTTGAAGAGGGCG
CAAGGAATACTGCTCTCCCGGGGAGGAGAGCAAAAGGCGGAAGATGAAGT
CCGACCAGCGTGGGATACTACTGCGACACGTATGGAGAACGGAACGTTAA
TGAAATCATGATGCTGGCGTGGGGACTGATATTCGTGTCCAGCGCTACGG
CGCCTCAACACCTAAAAATCCGCGATTTCACTGCGCCCTTGAAGAGGGCG
CAAGGAATACTGCTCTCCCGGGGAGGAGAGCAAAAGGCGGAAGATGAAGT
CCGACCAGCGTGGGATACTACTGCGACACGTATGGAGAACGGAACGTTAA
TGAACACGAGAAGGCCAAGCGTGACCAGCCTCAATCTCCGAACAGCCGAC
TGGAACCTTCCGATGGCCGACGAGTTACCTTGGCCAACTGACGGAAGTCA
AAGATGGAAGGGAGCTCGACGGCATCATAGCCACGGTTACATCACACGGT
GAAACACGAGAAGGCCAAGCGTGACCAGCCTCAATCTCCGAACAGCCGAC
TGGAACCTTCCGATGGCCGACGAGTTACCTTGGCCAACTGACGGAAGTCA
AAGATGGAAGGGAGCTCGACGGCATCATAGCCACGGTTACATCACACGGT
GA back to top
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