mRNA_H-paniculata_contig29356.8001.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29356.8001.1
Unique NamemRNA_H-paniculata_contig29356.8001.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29356.8001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29356contigH-paniculata_contig29356:510..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size946
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29356.8001.1prot_H-paniculata_contig29356.8001.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29356 557..1141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.294532-UTR-H-paniculata_contig29356:509..5561622929898.294532-UTR-H-paniculata_contig29356:509..556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29356 510..556 +
1691481060.560641-UTR-H-paniculata_contig29356:509..5561691481060.560641-UTR-H-paniculata_contig29356:509..556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29356 510..556 +
1622929898.3196836-UTR-H-paniculata_contig29356:1141..14551622929898.3196836-UTR-H-paniculata_contig29356:1141..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29356 1142..1455 +
1691481060.5859575-UTR-H-paniculata_contig29356:1141..14551691481060.5859575-UTR-H-paniculata_contig29356:1141..1455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29356 1142..1455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.3082974-CDS-H-paniculata_contig29356:556..11411622929898.3082974-CDS-H-paniculata_contig29356:556..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29356 557..1141 +
1691481060.5731614-CDS-H-paniculata_contig29356:556..11411691481060.5731614-CDS-H-paniculata_contig29356:556..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29356 557..1141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29356.8001.1

>prot_H-paniculata_contig29356.8001.1 ID=prot_H-paniculata_contig29356.8001.1|Name=mRNA_H-paniculata_contig29356.8001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MAQMLSKKCFHEGCSIHPSYGVVGTKKAEYCARHAGDGMVNVSTGKSTSS
SRRLKKRSSRSRVKLEVAPQNVDDNGGYSEILEKSRKRHAAPTVPSHSVS
SASRESHSAKQARTSNRLSVSEELTLCKPSPDVSPLDDRAMVKMEVAASR
CSVPELIFAAALTTAGHGGIESDGELKHDKVVDNNDAAVFRIQT*
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mRNA from alignment at H-paniculata_contig29356:510..1455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29356.8001.1 ID=mRNA_H-paniculata_contig29356.8001.1|Name=mRNA_H-paniculata_contig29356.8001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=946bp|location=Sequence derived from alignment at H-paniculata_contig29356:510..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGTACTAAGAAGGCAGAATTCTGTGCTCGGCATGCCGGAGACGGGATG
GCACAGATGCTGAGCAAGAAATGTTTCCATGAGGGCTGCTCTATACATCC
GTCGTATGGGGTGGTGGGTACGAAGAAGGCAGAGTATTGTGCTCGGCATG
CCGGAGACGGGATGGTTAATGTGTCAACGGGGAAAAGCACCAGCAGCAGC
CGTCGTTTGAAGAAACGGTCTAGTCGGTCACGGGTAAAGCTAGAAGTAGC
TCCGCAGAACGTCGATGATAATGGTGGATATTCTGAGATTCTGGAGAAAA
GCAGAAAGCGCCACGCCGCGCCAACTGTGCCTTCACACAGTGTTAGCTCT
GCCTCGCGCGAGAGTCACAGCGCTAAACAGGCGCGCACGTCCAATCGATT
GAGCGTCTCGGAGGAGCTAACCCTCTGCAAGCCATCGCCAGACGTGTCGC
CCCTCGATGATAGGGCTATGGTGAAGATGGAAGTGGCTGCATCGCGGTGT
TCAGTGCCAGAACTCATATTTGCAGCAGCGCTGACTACCGCAGGTCATGG
AGGCATCGAATCCGACGGGGAGTTGAAGCATGACAAAGTGGTTGATAATA
ATGATGCCGCTGTTTTTCGTATCCAGACGTAGTGGTAGAGCCACGGCTAC
GCTCCGTTAGTGTGTGCTTATCCTATATCCACAAATTTACTTGTGTCTAC
AGTGGAGGTTCGCGTAGGAGGCGATATTACTCGCGTCAAGATTCGTGGTC
CAGGAGTTGCCAGGTACAGATTTGGAAACCTGCTCCTAAGAAACAACGAC
GAGTATGGTCACCATCTTACTGTATTAATAATTAATGATATACCAGGGGT
CAAGCCAACCGCTGATCGCATATTTCATGTGTGTACAGCTAACAGCCGAT
CTTCGTAATTGAGGATGAAAACGGCATTTTCGCACCATGAACATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig29356:510..1455+

>mRNA_H-paniculata_contig29356.8001.1 ID=mRNA_H-paniculata_contig29356.8001.1|Name=mRNA_H-paniculata_contig29356.8001.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig29356:510..1455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACAGATGCTGAGCAAGAAATGTTTCCATGAGGGCTGCTCTATACA
TCCGTCGTATGGGGTGGTGGGTACGAAGAAGGCAGAGTATTGTGCTCGGC
ATGCCGGAGACGGGATGGTTAATGTGTCAACGGGGAAAAGCACCAGCAGC
AGCCGTCGTTTGAAGAAACGGTCTAGTCGGTCACGGGTAAAGCTAGAAGT
AGCTCCGCAGAACGTCGATGATAATGGTGGATATTCTGAGATTCTGGAGA
AAAGCAGAAAGCGCCACGCCGCGCCAACTGTGCCTTCACACAGTGTTAGC
TCTGCCTCGCGCGAGAGTCACAGCGCTAAACAGGCGCGCACGTCCAATCG
ATTGAGCGTCTCGGAGGAGCTAACCCTCTGCAAGCCATCGCCAGACGTGT
CGCCCCTCGATGATAGGGCTATGGTGAAGATGGAAGTGGCTGCATCGCGG
TGTTCAGTGCCAGAACTCATATTTGCAGCAGCGCTGACTACCGCAGGTCA
TGGAGGCATCGAATCCGACGGGGAGTTGAAGCATGACAAAGTGGTTGATA
ATAATGATGCCGCTGTTTTTCGTATCCAGACGTAGATGGCACAGATGCTG
AGCAAGAAATGTTTCCATGAGGGCTGCTCTATACATCCGTCGTATGGGGT
GGTGGGTACGAAGAAGGCAGAGTATTGTGCTCGGCATGCCGGAGACGGGA
TGGTTAATGTGTCAACGGGGAAAAGCACCAGCAGCAGCCGTCGTTTGAAG
AAACGGTCTAGTCGGTCACGGGTAAAGCTAGAAGTAGCTCCGCAGAACGT
CGATGATAATGGTGGATATTCTGAGATTCTGGAGAAAAGCAGAAAGCGCC
ACGCCGCGCCAACTGTGCCTTCACACAGTGTTAGCTCTGCCTCGCGCGAG
AGTCACAGCGCTAAACAGGCGCGCACGTCCAATCGATTGAGCGTCTCGGA
GGAGCTAACCCTCTGCAAGCCATCGCCAGACGTGTCGCCCCTCGATGATA
GGGCTATGGTGAAGATGGAAGTGGCTGCATCGCGGTGTTCAGTGCCAGAA
CTCATATTTGCAGCAGCGCTGACTACCGCAGGTCATGGAGGCATCGAATC
CGACGGGGAGTTGAAGCATGACAAAGTGGTTGATAATAATGATGCCGCTG
TTTTTCGTATCCAGACGTAG
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