mRNA_H-paniculata_contig1125.800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1125.800.1
Unique NamemRNA_H-paniculata_contig1125.800.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.190e-32
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 RSLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRNK 195
            RSLQVARK YWFEKFNWFI+SENYLV++GR+AQQNEVVVKKYLR GDIYVHADLHGASSCVVRNK
Sbjct:  657 RSLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNK 721          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A8B9GSV1_ASTMX (NFACT-R_1 domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9GSV1_ASTMX)

HSP 1 Score: 109 bits (273), Expect = 1.990e-29
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRN 192
            ++Q ARK YWFEKF WFI+SENYLV+ GRD QQNE++VK+YLR GDIYVHADLHGA+SCV++N
Sbjct:   47 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 109          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A3Q3KZ28_9LABR (NFACT-R_1 domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3KZ28_9LABR)

HSP 1 Score: 109 bits (273), Expect = 2.240e-29
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRN 192
            ++Q ARK YWFEKF WFI+SENYLV+ GRD QQNE++VK+YLR GDIYVHADLHGA+SCV++N
Sbjct:   59 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A7S1IEK7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IEK7_9EUGL)

HSP 1 Score: 117 bits (293), Expect = 5.120e-29
Identity = 49/69 (71.01%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRNKVSQSV 210
            +++V RK YWFEKFNWFITSEN LV++GRDAQQNE++VK+YLRQGD+YVHADLHGASSC+++N + + V
Sbjct:  484 TIKVLRKPYWFEKFNWFITSENLLVISGRDAQQNEILVKRYLRQGDVYVHADLHGASSCIIKNPLGKPV 552          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A3Q3JY82_MONAL (NFACT-R_1 domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3JY82_MONAL)

HSP 1 Score: 108 bits (270), Expect = 6.040e-29
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRN 192
            ++Q ARK YWFEKF WFI+SENYL++ GRD QQNE++VK+Y R GDIYVHADLHGA+SCV++N
Sbjct:   59 TIQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEIIVKRYFRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A3B4BJB3_9GOBI (Nuclear export mediator factor n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BJB3_9GOBI)

HSP 1 Score: 108 bits (269), Expect = 9.890e-29
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRN 192
            ++Q ARK YWFEKF WFI++ENYLV+ GRD QQNE++VK+YLR GD+YVHADLHGA+SCV++N
Sbjct:   58 TIQKARKVYWFEKFLWFISAENYLVIAGRDQQQNEMIVKRYLRAGDVYVHADLHGATSCVIKN 120          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A7S2T9B4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9B4_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 1.240e-28
Identity = 46/63 (73.02%), Postives = 59/63 (93.65%), Query Frame = 1
Query:   10 QVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRNKV 198
            +VARK YWFEKF+WF++SENYLV++GRDAQQNE++VK+YL   D+YVHAD+HGA+SCVVRN+V
Sbjct:   41 KVARKQYWFEKFDWFVSSENYLVVSGRDAQQNELLVKRYLTTHDVYVHADIHGAASCVVRNRV 103          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A0S7LM57_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM57_9TELE)

HSP 1 Score: 110 bits (275), Expect = 1.300e-28
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRNKVSQSV 210
            ++Q ARK YWFEKF WFI+SENYLV+ GRD QQNE++VK+YLR GD+YVHADLHGA+SCV++N    +V
Sbjct:   14 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKNPSGDAV 82          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A3B3QMV0_9TELE (NFACT-R_1 domain-containing protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMV0_9TELE)

HSP 1 Score: 109 bits (272), Expect = 1.410e-28
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRNKVSQS 207
            ++Q ARK YWFEKF WFI+SENYL++ GRD QQNE++VK+YL+ GDIYVHADLHGA+SCV++N    S
Sbjct:   58 TIQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEMIVKRYLKTGDIYVHADLHGATSCVIKNPTGMS 125          
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Match: A0A8M9PZY7_DANRE (nuclear export mediator factor Nemf-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PZY7_DANRE)

HSP 1 Score: 108 bits (271), Expect = 1.660e-28
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    4 SLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYVHADLHGASSCVVRN 192
            S+Q ARK YWFEKF WF++SENYL++ GRD QQNE++VK+YLR GD+YVHADLHGA+SCV++N
Sbjct:   82 SIQKARKVYWFEKFLWFLSSENYLIIAGRDQQQNEMIVKRYLRAGDLYVHADLHGATSCVIKN 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1125.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.190e-3290.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B9GSV1_ASTMX1.990e-2974.60NFACT-R_1 domain-containing protein n=1 Tax=Astyan... [more]
A0A3Q3KZ28_9LABR2.240e-2974.60NFACT-R_1 domain-containing protein n=4 Tax=Percom... [more]
A0A7S1IEK7_9EUGL5.120e-2971.01Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A3Q3JY82_MONAL6.040e-2971.43NFACT-R_1 domain-containing protein n=2 Tax=Percom... [more]
A0A3B4BJB3_9GOBI9.890e-2971.43Nuclear export mediator factor n=1 Tax=Periophthal... [more]
A0A7S2T9B4_9CHLO1.240e-2873.02Hypothetical protein (Fragment) n=2 Tax=Chloropico... [more]
A0A0S7LM57_9TELE1.300e-2868.12NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A3B3QMV0_9TELE1.410e-2867.65NFACT-R_1 domain-containing protein n=1 Tax=Paramo... [more]
A0A8M9PZY7_DANRE1.660e-2871.43nuclear export mediator factor Nemf-like n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1125contigH-paniculata_contig1125:28087..28302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.702058-CDS-H-paniculata_contig1125:28086..283021622928828.702058-CDS-H-paniculata_contig1125:28086..28302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 28087..28302 -
1691480636.8842745-CDS-H-paniculata_contig1125:28086..283021691480636.8842745-CDS-H-paniculata_contig1125:28086..28302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1125 28087..28302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1125.800.1prot_H-paniculata_contig1125.800.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1125 28087..28302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1125.800.1

>prot_H-paniculata_contig1125.800.1 ID=prot_H-paniculata_contig1125.800.1|Name=mRNA_H-paniculata_contig1125.800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
RSLQVARKTYWFEKFNWFITSENYLVLNGRDAQQNEVVVKKYLRQGDIYV
HADLHGASSCVVRNKVSQSVT*
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mRNA from alignment at H-paniculata_contig1125:28087..28302-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1125.800.1 ID=mRNA_H-paniculata_contig1125.800.1|Name=mRNA_H-paniculata_contig1125.800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig1125:28087..28302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGCCTCCAGGTGGCTCGCAAGACGTACTGGTTCGAGAAGTTCAATTG GTTCATTACGTCGGAGAACTACTTGGTGCTGAACGGCCGCGACGCGCAGC AGAACGAGGTGGTGGTGAAGAAGTATCTCCGGCAGGGGGACATATACGTC CACGCTGACCTGCACGGCGCTTCGTCCTGTGTCGTGAGGAACAAGGTGAG TCAGTCAGTCACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1125:28087..28302-

>mRNA_H-paniculata_contig1125.800.1 ID=mRNA_H-paniculata_contig1125.800.1|Name=mRNA_H-paniculata_contig1125.800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig1125:28087..28302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGCCTCCAGGTGGCTCGCAAGACGTACTGGTTCGAGAAGTTCAATTG
GTTCATTACGTCGGAGAACTACTTGGTGCTGAACGGCCGCGACGCGCAGC
AGAACGAGGTGGTGGTGAAGAAGTATCTCCGGCAGGGGGACATATACGTC
CACGCTGACCTGCACGGCGCTTCGTCCTGTGTCGTGAGGAACAAGGTGAG
TCAGTCAGTCACATGACGTAGCCTCCAGGTGGCTCGCAAGACGTACTGGT
TCGAGAAGTTCAATTGGTTCATTACGTCGGAGAACTACTTGGTGCTGAAC
GGCCGCGACGCGCAGCAGAACGAGGTGGTGGTGAAGAAGTATCTCCGGCA
GGGGGACATATACGTCCACGCTGACCTGCACGGCGCTTCGTCCTGTGTCG
TGAGGAACAAGGTGAGTCAGTCAGTCACATGA
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