mRNA_H-paniculata_contig29343.7999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29343.7999.1
Unique NamemRNA_H-paniculata_contig29343.7999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29343.7999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29343contigH-paniculata_contig29343:985..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size497
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29343.7999.1prot_H-paniculata_contig29343.7999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29343 985..2726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.139005-CDS-H-paniculata_contig29343:984..11391622929898.139005-CDS-H-paniculata_contig29343:984..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29343 985..1139 +
1691481060.4824567-CDS-H-paniculata_contig29343:984..11391691481060.4824567-CDS-H-paniculata_contig29343:984..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29343 985..1139 +
1622929898.1512594-CDS-H-paniculata_contig29343:2602..27261622929898.1512594-CDS-H-paniculata_contig29343:2602..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29343 2603..2726 +
1691481060.493379-CDS-H-paniculata_contig29343:2602..27261691481060.493379-CDS-H-paniculata_contig29343:2602..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29343 2603..2726 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.1715417-UTR-H-paniculata_contig29343:2726..29441622929898.1715417-UTR-H-paniculata_contig29343:2726..2944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29343 2727..2944 +
1691481060.5034363-UTR-H-paniculata_contig29343:2726..29441691481060.5034363-UTR-H-paniculata_contig29343:2726..2944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29343 2727..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29343.7999.1

>prot_H-paniculata_contig29343.7999.1 ID=prot_H-paniculata_contig29343.7999.1|Name=mRNA_H-paniculata_contig29343.7999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MWFTRVLVQPRFCRSAFGVSFLECLAFCIISGSPEFTQQCYCCGFVFLRG
GRADLLDPAILSQIVEGGLYSSKRLHGFKGTKQQPIGGESIV*
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mRNA from alignment at H-paniculata_contig29343:985..2944+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29343.7999.1 ID=mRNA_H-paniculata_contig29343.7999.1|Name=mRNA_H-paniculata_contig29343.7999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1960bp|location=Sequence derived from alignment at H-paniculata_contig29343:985..2944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTTCACCAGGGTTCTCGTTCAGCCTCGGTTCTGTCGTTCGGCGTT
TGGCGTGTCGTTTCTCGAGTGTCTCGCTTTTTGTATCATTTCTGGAAGCC
CTGAATTCACTCAACAGTGTTATTGTTGTGGCTTTGTTTTCCTACGCGGT
GGAAGGTGAGCTCTTTTCCGTGCGTATCTGTTTTTCACGAGCGAAAAGTT
TGTATGTCATACGCGATCATGCATGAAAAACGCCGCACTTCCCTGACTGA
CCCCTCCGCTGACTGACTGTATAGAACAGGGTTGCAGTCGTGCTTTTGTT
TTGTAGGTGCCTTGTAGTCCAAACGCGAAGTTGAAGATATCCAGATGATA
TGGTAGTGTAGGCGCATGTTGGATCATTGCAGGAGATAGCAGAGGAAAGC
TGATCTCGTTGCCTTTAGCTGCTGCCTGCAGCATGTTTGGCTAAGGTTTG
TTATGCTCGGAAGCATATTGACGATCGCTCTGATTCCGTTGAGGTATATC
ACAGAGACATGTCTGTAGAGAAGCATCATATAGTGTGGCACCCCAAAACG
TTCGCTGGGGTACTGTACTGGTTTTCTCTCTGCCCTTTCACGCCCGATTA
AATCTGTTTGCAGTCAACGATGATATGATCACCCCTGCTGTTAAGAAACA
GTCCTTTGTAGATGTACAAACTTCTCTGCCTATGTACATGTCAGTACTGA
GTAGCTCCGTTCATGAGTTTGGCGCAGCGGACCGACCAAAGTTTTGTCCT
TGAATCCTTGGAGTCAACGCGGAGGCTTGTGGATTTTGCGTCTCAATAAG
ACAACGTAAGGGTGCCCACACTCACTGCTGTAACCATCCTGCTGCACCAT
ATCTGTCGGTATTAATTTGATGAGAATAGAAGATGGACTTGTGGCGTTGT
GACGGAAAGGATGTCCCCTTCAGTCTGTTCTACGCCCTAGTACGAACCTC
TACTGTAGTGTGTTGGATACTGCACTATGTATAATAATAGTAGGTGTGAA
AACATGAACACATGTTCAAAATTACAGTGGGCGTTTTTGAGGTCATATCT
GCGCGGTCGGCAGCATGCGCGACCAAAGCATTGATAGCACTGGCGCAGCC
ATGCCCGACGTTGTAGCAAACTAACGTGTTATTAGTTTTGTTTGGACGGG
GAAAGGACTGTATCGACTCTTTCGCATAGCTATTACATTACGGGAAAAAG
TTACTGCCAACAGTTGTGCCCGTTGTGCTGACTATTCAGTTTTGTCACTT
ACACACAAAACCATAACCCCTCAGTCGTACACATACATCCACGTTGTTGA
CTCAACGCAGCGATAGCCTGCCAAACTGCTGCAGTTAGTATCCCACTGTC
CTCAATACATTCAACCCAGCGAACCCCCGGTAAGCGTAAAAAGATGCGTC
AAACACAGCAAACCGCTGGCAAGTTCAAACGTATGTACTATTTAATACTC
CTATTTTGAAGATCGCAAGCTGACTGCTCAATGTTTGCGTTCAGCGTGTC
AACCAACCCTGAGAATATTACAAGAAACTCTGACTCCTTTCTAAACAAAC
TGCGTACGCCACCGTTTCCCCCTATGCCCCCGGCCGCCGGATTCTTGTTA
TTATCCATCAATTGCCAGGGCAGATCTGCTAGACCCTGCTATATTATCTC
AGATAGTCGAGGGTGGCCTATACTCTTCCAAGCGCCTTCACGGCTTCAAG
GGAACAAAACAACAGCCCATTGGAGGAGAGTCGATAGTCTGAGTAAGCAC
TACTGGAGACGAGGCGAGACATCCAACTCACACAACAAGGACGGGGGAAG
GAAGGGAGAAAACAACAACGATAACATAGAGCCCGCGCGCGTTCATTGGC
CAACTGACTGCCTTAAGTCCGACTAGATGATTGGACCACCACCCTAGAGG
AAGACGGTCTGTGTATAGAAAAGGAGGCAGGGAGGGCAGCGGAACACCCC
ACGAGCAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig29343:985..2944+

>mRNA_H-paniculata_contig29343.7999.1 ID=mRNA_H-paniculata_contig29343.7999.1|Name=mRNA_H-paniculata_contig29343.7999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig29343:985..2944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTTCACCAGGGTTCTCGTTCAGCCTCGGTTCTGTCGTTCGGCGTT
TGGCGTGTCGTTTCTCGAGTGTCTCGCTTTTTGTATCATTTCTGGAAGCC
CTGAATTCACTCAACAGTGTTATTGTTGTGGCTTTGTTTTCCTACGCGGT
GGAAGATGTGGTTCACCAGGGTTCTCGTTCAGCCTCGGTTCTGTCGTTCG
GCGTTTGGCGTGTCGTTTCTCGAGTGTCTCGCTTTTTGTATCATTTCTGG
AAGCCCTGAATTCACTCAACAGTGTTATTGTTGTGGCTTTGTTTTCCTAC
GCGGTGGAAGGGCAGATCTGCTAGACCCTGCTATATTATCTCAGATAGTC
GAGGGTGGCCTATACTCTTCCAAGCGCCTTCACGGCTTCAAGGGAACAAA
ACAACAGCCCATTGGAGGAGAGTCGATAGTCTGAGGCAGATCTGCTAGAC
CCTGCTATATTATCTCAGATAGTCGAGGGTGGCCTATACTCTTCCAAGCG
CCTTCACGGCTTCAAGGGAACAAAACAACAGCCCATTGGAGGAGAGTCGA
TAGTCTGA
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