mRNA_H-paniculata_contig2931.7995.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2931.7995.1
Unique NamemRNA_H-paniculata_contig2931.7995.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2931.7995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2931contigH-paniculata_contig2931:12459..13139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size646
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2931.7995.1prot_H-paniculata_contig2931.7995.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2931 12592..13010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.269808-UTR-H-paniculata_contig2931:12458..125911622929897.269808-UTR-H-paniculata_contig2931:12458..12591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2931 12459..12591 +
1691481060.1871505-UTR-H-paniculata_contig2931:12458..125911691481060.1871505-UTR-H-paniculata_contig2931:12458..12591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2931 12459..12591 +
1622929897.3300765-UTR-H-paniculata_contig2931:13010..131391622929897.3300765-UTR-H-paniculata_contig2931:13010..13139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2931 13011..13139 +
1691481060.2296243-UTR-H-paniculata_contig2931:13010..131391691481060.2296243-UTR-H-paniculata_contig2931:13010..13139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2931 13011..13139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.2884347-CDS-H-paniculata_contig2931:12591..128151622929897.2884347-CDS-H-paniculata_contig2931:12591..12815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2931 12592..12815 +
1691481060.1985288-CDS-H-paniculata_contig2931:12591..128151691481060.1985288-CDS-H-paniculata_contig2931:12591..12815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2931 12592..12815 +
1622929897.3084638-CDS-H-paniculata_contig2931:12850..130101622929897.3084638-CDS-H-paniculata_contig2931:12850..13010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2931 12851..13010 +
1691481060.2169144-CDS-H-paniculata_contig2931:12850..130101691481060.2169144-CDS-H-paniculata_contig2931:12850..13010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2931 12851..13010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2931.7995.1

>prot_H-paniculata_contig2931.7995.1 ID=prot_H-paniculata_contig2931.7995.1|Name=mRNA_H-paniculata_contig2931.7995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MNTNSTNFDVFSHVAMSLKSCAEKLKVFVQSSNLSLIPGGAGKLETLLGH
SLTQVFLDSSRIQAAVHSHQMYERRKGERKGGGNYRCITRVCTVRKCEIS
FTWMYDGNEVPHLPTGSLTVSAAKMLV*
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mRNA from alignment at H-paniculata_contig2931:12459..13139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2931.7995.1 ID=mRNA_H-paniculata_contig2931.7995.1|Name=mRNA_H-paniculata_contig2931.7995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=681bp|location=Sequence derived from alignment at H-paniculata_contig2931:12459..13139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCACTCATAGCAACGAGCGTAAAACAAAACGGAGGTATGGTGAGCATA
TTGAAGTTGCTGGATTATTTGTCCTTCACAAACTGAGCGAACGAAGGGGG
CAGAGGCACTGGAACAAGAAAGGTTTTTGCGACATGAACACGAATTCAAC
TAATTTCGACGTGTTTTCTCACGTGGCAATGTCACTTAAAAGTTGTGCGG
AGAAATTGAAGGTGTTCGTGCAGTCAAGTAATTTGTCGCTAATACCAGGC
GGCGCAGGCAAGCTTGAAACGCTTCTTGGGCACTCTTTAACCCAAGTATT
TCTAGACAGTAGCCGTATCCAAGCAGCTGTACATTCGCACCAAATGTACG
AACGAAGGCTAAATAATTGATATGATTTTCAAGTGCAAAGAGGAAGGGTG
AAAGGAAAGGGGGGGGTAACTATCGCTGTATCACTCGCGTGTGTACTGTT
CGTAAATGTGAAATATCTTTTACATGGATGTACGACGGAAATGAAGTACC
ACACTTACCCACCGGCAGCCTCACAGTTAGTGCAGCTAAAATGCTCGTGT
AATAACTCCATAGTACCCAATGTTGAGACCATACAGCTGACCGCAATTTC
TGTTGTCGACATTTACCGGTAAAATAAGATCAATAGGGCGCGGGGGGGAG
GAATCCTCGAGAGGACGGAGCTTTATTCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2931:12459..13139+

>mRNA_H-paniculata_contig2931.7995.1 ID=mRNA_H-paniculata_contig2931.7995.1|Name=mRNA_H-paniculata_contig2931.7995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig2931:12459..13139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACACGAATTCAACTAATTTCGACGTGTTTTCTCACGTGGCAATGTC
ACTTAAAAGTTGTGCGGAGAAATTGAAGGTGTTCGTGCAGTCAAGTAATT
TGTCGCTAATACCAGGCGGCGCAGGCAAGCTTGAAACGCTTCTTGGGCAC
TCTTTAACCCAAGTATTTCTAGACAGTAGCCGTATCCAAGCAGCTGTACA
TTCGCACCAAATGTACGAACGAAGATGAACACGAATTCAACTAATTTCGA
CGTGTTTTCTCACGTGGCAATGTCACTTAAAAGTTGTGCGGAGAAATTGA
AGGTGTTCGTGCAGTCAAGTAATTTGTCGCTAATACCAGGCGGCGCAGGC
AAGCTTGAAACGCTTCTTGGGCACTCTTTAACCCAAGTATTTCTAGACAG
TAGCCGTATCCAAGCAGCTGTACATTCGCACCAAATGTACGAACGAAGGA
AGGGTGAAAGGAAAGGGGGGGGTAACTATCGCTGTATCACTCGCGTGTGT
ACTGTTCGTAAATGTGAAATATCTTTTACATGGATGTACGACGGAAATGA
AGTACCACACTTACCCACCGGCAGCCTCACAGTTAGTGCAGCTAAAATGC
TCGTGTAAGAAGGGTGAAAGGAAAGGGGGGGGTAACTATCGCTGTATCAC
TCGCGTGTGTACTGTTCGTAAATGTGAAATATCTTTTACATGGATGTACG
ACGGAAATGAAGTACCACACTTACCCACCGGCAGCCTCACAGTTAGTGCA
GCTAAAATGCTCGTGTAA
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