mRNA_H-paniculata_contig29305.7993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29305.7993.1
Unique NamemRNA_H-paniculata_contig29305.7993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.740e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   37 ACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFGKV 174
            A W+ GA LLV GSLVNFASFGFAPQSLLASLGSVQF+SNV FGKV
Sbjct:  301 ALWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKV 346
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.750e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   37 ACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFGKV 174
            A W+ GA LLV GSLVNFASFGFAPQSLLASLGSVQF+SNV FGKV
Sbjct:  304 ALWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKV 349
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A5J4XLB8_9CHLO (Probable magnesium transporter n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XLB8_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.780e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   43 WWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAF 165
            W CG  L VVG+ +NF SFGFA QSLLA+LGS+QFVSNV F
Sbjct:   50 WQCGVGLFVVGNALNFISFGFAAQSLLAALGSIQFVSNVFF 90
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A812HPV2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HPV2_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 5.730e-10
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   10 RRLFRRRIKACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFGK 171
            RR   R  +  W+ GA+L   G+L+NF S   APQ+LLA+LG+VQFVSNV F +
Sbjct:   31 RRAEERAWRIVWYVGASLFAAGNLLNFRSLSLAPQTLLAALGAVQFVSNVFFAR 84
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A7S2G6P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6P9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.440e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   43 WWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFGK 171
            W  G  + V GSL+NFASFGFAPQ LLASL SVQFV+NV FG+
Sbjct:   76 WIIGTCIFVSGSLMNFASFGFAPQMLLASLESVQFVTNVFFGR 118
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A836BC83_9CHLO (Probable magnesium transporter n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A836BC83_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-9
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 PGERRLFRRRIKACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAF 165
            P E +   R+IK  W  G A   VG+++NF SFGFA QSLLA+LGS+QFVSNV F
Sbjct:   53 PDEEKPSVRKIKE-WVIGMAFFSVGNILNFTSFGFAAQSLLAALGSIQFVSNVIF 106
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A7S2SH77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH77_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.710e-9
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   43 WWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFG 168
            W  G  + V GSL+NFAS+G APQSLLASL S+QFV+NV FG
Sbjct:  103 WVIGTVVFVTGSLLNFASYGLAPQSLLASLESIQFVTNVLFG 144
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A2J7ZNH9_9CHLO (Probable magnesium transporter n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZNH9_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.220e-9
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 PGERRLFRRRIKACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAF 165
            P +++   R+IK  W  G +   VG+++NF SFGFA QSLLA+LGS+QFVSNV F
Sbjct:   55 PEDQKPPTRKIKE-WVVGMSFFTVGNILNFVSFGFAAQSLLAALGSIQFVSNVIF 108
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A8J5R4_CHLRE (Probable magnesium transporter (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J5R4_CHLRE)

HSP 1 Score: 59.7 bits (143), Expect = 4.700e-9
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 PGERRLFRRRIKACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAF 165
            P +++   R+IK  W  G +   VG+++NF SFGFA QSLLA+LGS+QFVSNV F
Sbjct:   35 PDDQKPSVRKIKE-WVVGMSFFSVGNILNFTSFGFAAQSLLAALGSIQFVSNVIF 88
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BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Match: A0A061RQ90_9CHLO (Probable magnesium transporter n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RQ90_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 4.850e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   43 WWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFVSNVAFGKV 174
            W  G  + + G + NF SFG+APQSLL++LGSVQFVSNV F  V
Sbjct:   52 WQVGVVIFLAGGIANFVSFGYAPQSLLSALGSVQFVSNVVFASV 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29305.7993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6Y8_9PHAE3.740e-1684.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9H4_ECTSI3.750e-1684.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5J4XLB8_9CHLO3.780e-1070.73Probable magnesium transporter n=1 Tax=Trebouxia s... [more]
A0A812HPV2_9DINO5.730e-1051.85Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S2G6P9_9STRA8.440e-1069.77Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A836BC83_9CHLO1.210e-958.18Probable magnesium transporter n=2 Tax=Chlamydomon... [more]
A0A7S2SH77_9STRA1.710e-966.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2J7ZNH9_9CHLO4.220e-954.55Probable magnesium transporter n=1 Tax=Tetrabaena ... [more]
A8J5R4_CHLRE4.700e-954.55Probable magnesium transporter (Fragment) n=1 Tax=... [more]
A0A061RQ90_9CHLO4.850e-959.09Probable magnesium transporter n=2 Tax=Tetraselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29305contigH-paniculata_contig29305:2283..2456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog2880.D7G9H4
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2922@1,KOG2922@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.2203994-CDS-H-paniculata_contig29305:2282..24561622929897.2203994-CDS-H-paniculata_contig29305:2282..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29305 2283..2456 +
1691481060.1696496-CDS-H-paniculata_contig29305:2282..24561691481060.1696496-CDS-H-paniculata_contig29305:2282..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29305 2283..2456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29305.7993.1prot_H-paniculata_contig29305.7993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29305 2283..2456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29305.7993.1

>prot_H-paniculata_contig29305.7993.1 ID=prot_H-paniculata_contig29305.7993.1|Name=mRNA_H-paniculata_contig29305.7993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
PGERRLFRRRIKACWWCGAALLVVGSLVNFASFGFAPQSLLASLGSVQFV
SNVAFGKV
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mRNA from alignment at H-paniculata_contig29305:2283..2456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29305.7993.1 ID=mRNA_H-paniculata_contig29305.7993.1|Name=mRNA_H-paniculata_contig29305.7993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig29305:2283..2456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGGAACGGCGGCTGTTTCGGCGGCGGATCAAGGCCTGCTGGTGGTG
CGGGGCTGCGTTGTTGGTGGTGGGGAGCTTGGTTAATTTCGCATCGTTCG
GGTTCGCACCGCAGAGCTTGCTGGCCAGCCTGGGGTCGGTGCAATTTGTC
TCTAATGTTGCGTTTGGCAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig29305:2283..2456+

>mRNA_H-paniculata_contig29305.7993.1 ID=mRNA_H-paniculata_contig29305.7993.1|Name=mRNA_H-paniculata_contig29305.7993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig29305:2283..2456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGGAACGGCGGCTGTTTCGGCGGCGGATCAAGGCCTGCTGGTGGTG
CGGGGCTGCGTTGTTGGTGGTGGGGAGCTTGGTTAATTTCGCATCGTTCG
GGTTCGCACCGCAGAGCTTGCTGGCCAGCCTGGGGTCGGTGCAATTTGTC
TCTAATGTTGCGTTTGGCAAGGTGCCCGGGGAACGGCGGCTGTTTCGGCG
GCGGATCAAGGCCTGCTGGTGGTGCGGGGCTGCGTTGTTGGTGGTGGGGA
GCTTGGTTAATTTCGCATCGTTCGGGTTCGCACCGCAGAGCTTGCTGGCC
AGCCTGGGGTCGGTGCAATTTGTCTCTAATGTTGCGTTTGGCAAGGTG
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