mRNA_H-paniculata_contig2930.7992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2930.7992.1
Unique NamemRNA_H-paniculata_contig2930.7992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2930.7992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2930contigH-paniculata_contig2930:3190..8883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.1612856-CDS-H-paniculata_contig2930:3191..34061622929897.1612856-CDS-H-paniculata_contig2930:3191..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2930 3192..3406 -
1691481060.1490607-CDS-H-paniculata_contig2930:3191..34061691481060.1490607-CDS-H-paniculata_contig2930:3191..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2930 3192..3406 -
1622929897.1805992-CDS-H-paniculata_contig2930:8843..88831622929897.1805992-CDS-H-paniculata_contig2930:8843..8883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2930 8844..8883 -
1691481060.1585011-CDS-H-paniculata_contig2930:8843..88831691481060.1585011-CDS-H-paniculata_contig2930:8843..8883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2930 8844..8883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2930.7992.1prot_H-paniculata_contig2930.7992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2930 3192..8883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2930.7992.1

>prot_H-paniculata_contig2930.7992.1 ID=prot_H-paniculata_contig2930.7992.1|Name=mRNA_H-paniculata_contig2930.7992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
GYTQLRSSIYCGEDHAPGVSEGGGAPDRGAGFAVWRGQHGMYQERRVVER
RTKVCARLRARSWDSSRQGRIANCWCPAPWPTLFL
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mRNA from alignment at H-paniculata_contig2930:3190..8883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2930.7992.1 ID=mRNA_H-paniculata_contig2930.7992.1|Name=mRNA_H-paniculata_contig2930.7992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5694bp|location=Sequence derived from alignment at H-paniculata_contig2930:3190..8883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTACACCCAGCTAAGGTCGAGCATATACTGTGGTGAAGGTGAGCTGTA
CTTTTAGTAGAAATTTGAAGCTTGGCTAAGCATGGAAAGTGTGTAGTTTT
TCCTGAGGTGCACAAACCACCTAAGCATTTGCAGGGTTCACAACAAGCTT
TCGGGAGTATTGGTTGAAATGCCTACCGTCTGCGGGAGTCAACGTGCCTG
GATATGATATCATACCCACAGTACCTACCTATACAAGGAGAATGGGCAAA
GGTGTAACGTGACGTGAACTTCTCTCTAACCCGTAGCACTCGCTGTGGTG
ATGTTGTGTGTTGCTGATGCAGAACCTGTATGATGCGCGTCAAACTATAG
ATTGGGAAGAAATGGCCTTTTGATATCCAAGATGGATTCGACCTGTACTA
CTACTGTAATGTCTGTCTGTATGTACTCATGTGACAGTACCATCAGGTAA
ACTACAAGTTTGTGCTCGGCTCTCGAATTCTGTGCATTGATGAGAGAAAG
CCCTGCGATCAGGTACTCGCAATAAATAAGTAAACCCAACTAACACGGCC
AGATGCTACTGCCAGCCTCGAAATATGAGGCCGATAACTGCGAATACCAG
ATACCTGCACCCCACGTTCACCTCCCTCCCTGTTCTCCCCGGCTTCTTTT
CACCTCAATTCGTTTATGTGTAATATCATTTCGTTGCTCGTGTTATAGAC
ATTATAAACCATTCCAAACAATCCCTTCCCCCGGCTGTTTCTGTCCTCCT
ATCGAGGCACTCTCTATCGCATTCGATACCCGCTTCGCACCATCACTTTT
TCTTCTCACGTACACCTTATACGCATCAGAATTCCAACGACCTTATTTCT
GCACTATGTCAAGCGACGCGCCGCCTGCTGATAGATGAGTAGCCCCGCCA
ATCCTTAGGGGGTGCAACGCGTGTTCGTCCGGGTTCACGGGCGCCTGAGC
CACCAACACCCGCAACGCTTTCGTCGCCTGACTCTGTGTCCACCACCCGT
GTGTCCCATCCTTGCGTATAAAAGTCATCAACGGTGCCTCTGGTGGGAGA
CCCTGAAAACATGACAACAATTCTATCATTACATCCACCGCCCCGCGGGA
ACTCGCCTTTCTCGCACAACCTCCGCGTCTCATGCAGGTAACAATCGTTC
CTCGTCTCGTCTGGTCACCTTTGGATGCACGGAAAAAAACATCAACGCGG
TCAACTAGAAACCAAAACGGCCAGCGCAATTGTTGCGTGCCCTGAAATAG
AGCCACGTCTCTCCTACGTCAACAGTATTCAGGGTGCACACGCTCGGCGG
CCTCCGCGAAAATTCCGATGCCTTGGTCAGAAAGAAGAACGAAACTCCGA
GGCTCAAAAATAACACACGTCCTCCAACTCCCCAACGTGGAACTAAGTGT
TCCCCTCTCAATAACGTCACCGACGATAGGGGTCGCCGCTTCCTATTCCT
ATTTCCGATTTCTGCATGACTCCGTGCTGTTCCTTTGATAGCATTTTTTA
CTAGCACGTGGCCGATTGACAATTCGATATGATACACCACGTGATGGAAA
TATTGATGGCCGCTAAATGGCTCTCGATTGTCTGCGCCCGCAACCCATGT
ACCAGGAACGCATACGCCACATATGACACAAACACCTCTACGTATTCCAT
TGTGCTTCAACCTGCGGGCAAGAAATCCGGTTGATTCATCTCACGCTGGA
ATCGAACGAATGACCCAAGGTATCCCTGGTAAGTTTGCTCAGACGATCTC
GCAATGGATTCTCGCACGAACTCGAATCCAAAATGCTGGAACAAATCGCG
TGCCCTTGGTCCCCGATGACCTGTTCATGCCACGGGACGTCGGGCGCAAA
GAAATTAAATTGGTGGCGACAGTACTTCTCACCCACCGCGAAATTCCATC
TGCCACTTCATTGATCACCCCTGGGACATGTTTGGCCTCGAAATACCATT
CGCTGGCCATTTCAAGTACCCCTAAAAAACGCATGAGTGCTCTAGCTCTC
GGTTCTTTGCCGCCCCGGCATTTATTGATCCAATGAACGGCAAATATATC
AGCACCTCGCATTAAAACACGGTCTTTGTTGTTGGTTGGTCTTTCTTGAA
GCCGTACCACCATCACCCACGCAGACATGACTATACCCAATAATTCGAGA
ATATTAATTGATATGTCATTTTCGTCGTGAATTTTCGTGGCCACGTACAC
ATAATAGTTGTTCGGTCGTCAAGTCATATCGCCGCCATGTGCCAGTTTCC
ACACAAAAACATCCCTCAGGTAATTGTGATGCATCGGAAAACCATGTGCG
AGTCGGCATTCGGTCTGACAAATGATACATAGGTGCAAACATTCGGCCTT
CACGAATTTTTACACCGTCGGATGCCAGTCATCTCCAAAACTTCATGTCA
CCGTGAAACTCGGGACCCAACGCTACGTGTCGGTGCCGATTCGATAATCG
AAGGGAAAATTCCGTAATTCCGACACCGGCTTTGTGCATCGTGGACAGAT
TCACCAACTTCAATAGCCACCGCACAAAAAAATGCCCGAGTCGAACGACA
AACGACACGTGTAAAAGAAACCCGGTCAATGACCCTATTTCTTTCACGGA
TACGTGCCTTCGCGACTTAGGCCATGCCTGAATCAACGCTTGTAGCTTGC
GCACCTTTTTATCTGACATTGCGATCATTAGCGCTTCAGTATCTATAATC
CATCCCAACACCTCAATACATGTGTCCCAGTTGGAAATCTTCTTAGCGGC
TAACAGCGAAGGATCTCCCGTCTTCCGCTCTCCCAACAATCGAAAATGGT
CAGACGCTAAAGATTGAGATGCGCGTAAATATCGTCTAAAATCCAGCCGA
TATACAACTTCCACTAGAATTGCATCGCCGGCATAGTACTTCACGAAAAA
CGGATCAGAGATGCCACCACCCCCACCCGGAATTGCTGCACAGTCAGGAG
GAACGAGTTTAACAGACCGATTGCGCGGCTCTGCCACCCGCACCCCCGCC
GCTGCAGCGCTGCCGTGATCGGATACTCTGGCACCGCGAAACGTTGTATG
ATTGTGTGAGTGTTCAAGTGCAGCCGCCGCTAGCGCCCAATACCCGGAGC
TACTGCGCCATCCAAACTGTAATCGGAGATCGGACACCACCACTCCCTCA
ATCGCATCGCTGAATAACTGAGCGCCAGCGAGATCAATAGGGATTTGCCT
GTATGCTTCACTAACATCCATCTTACTGATCACAATACGAGCGTTTGGCC
CATGCTTTTGCCCCAAGTACATAATACGTAACAAGACGTCTTTGATGACA
TGACCAAGTTCAACTTGTGGGGTACATGCAAAATCAGTATCCGCATTCAT
ACTCGAGAAATCATCCAGGTCGTTTCGTGGGAAAGTTATGTACAATACGA
AACTTATTATTGACCACTCGTACAGAGGAGATACGCAGGCGATTAATCTC
GCATGCACGCCCTCGGTCAAACACTACGGCTCTACCGTTGACGACATCCG
CCATCACTTGAGAGGTTATCTTAGAAGCGTGCGGTTGAGTGCTATGATGT
TTCCCGTATTCTAGTGCCCCACAGCGTTTCCCCCCGTTCTTTACATCACA
ATCAGCACCGGGGTTCAGTGTACGAAACAGACGCTCTATATCTGGAAATT
TCTTTATACCCCCAAACCAGTGGGACACGCTGTCAATACCAATATGTCGT
GCGAAGTGGGAAAAACCAATGTTATGCACCAAATTGCCCACACTATCATC
TACCAACGCGAGCATATCCGAACCCAATTGCACAATCAAGTGCAGTTGTT
GGGCGCCTGTTTCTTCATCACGCAGTAATCGAACGTCCTGTTTTCATCTC
TTAATCAGAGAGGCAAAGTGGGGCAAATGTTTTTCGCACAACACTGTTTT
GTGAATAATCCGTTTCCCCAACCAAATCATTTCACAAACACACCGGGTTC
GCACGCTCGCAGAGATCCAGGGCCAAGCGGCTCCGGAGCGCCTACGGCTT
GATCCACCTGTGCTAACGCCTCACGAGCCAGCCCCCTCACCCCCCCAGTA
CTCCTCACAGTGCTGCGCCGCTGCGTCCCCGAACCTGTAGGCCCCGACGT
GTCCCAGCGAGGCCCGCGCCCCTATCCCGAATTGGCCGAGCCACCCGCGC
CCGCTGCTGCTGTCCGGCCCCCACCGCGGCCCCCACCTTGCTGCCGCGAT
GCCGAGGACTGGCTCACCGAGCCTCTTCCCCGTCCAGCGACGGCGCCGGC
CCCACGCCCTGCATCCACGCCGCCCCGCGTCCTCCTGCTGGATGGGACCT
GTACTATTACTGTACTGTCTGTCTGTATGTACTCATGTTACAGTACCATC
AGGGGTAATTTGTTTTCGCCCAGCGAGGATGAGGATTGCAGCCATGACAT
CATGTATGCGCAACGTAATATACCCCCTCTCACGGTGCAGTCCTAGCCTT
AATCAACCAAGTTCCATCGAGTGGGTGCACACAAGGAAGAACAGAAACCC
AGTAAACGTTTGAGCACCGGAAACAGCGTAACCGGCAATGACGATAAATA
ACGTCGCCTTCCTTGTACCTCGGGTCGGCGAAGGTACACGGTACACAGAA
CGTGGACTTCGACCGACGTCCCTCTTGCAGCCCGCCCAACTGTCTATCTT
GGCAGCATATAGCGTGCAAATCTCGAATGGCTGCACCTTTTGTGCGAAAC
GCACAAGCAATGAAAACTTGACCCTTGTATTTACATTAGTAACACAAACA
CCAGCTGCCATCCACTTCACGTCTGATCAACATTAGATTTGACACGTAAC
TTTCAAGTATTGTCTATCCTAACTGAAGAGCACAAAACAAAACATTCATT
CTAGTTCATTTAAGTGCTCTGCAAAATTACCGCGCTATCTTCGTGTTGGT
AAGGTAATCGGGGATCGGGGGAAATCCAGCAGGAGGGAACGCTGGAACTA
CAGTTCGGAAAATCGGGGTCACTGTAGCCAAAGGTCATTCTGAGTGTTAC
AAAATCACTCTTCTCTTTTCCCATTTTCCCGGTCAACGGGAATAGAGAAA
AACGGTCGTCTCATTGTAAACGTCGAGCCCAGCAATTCGCTTTCACCCAG
AATGTATAGATGAGACAAACGATGAACGACAACAGCCATGTACATAATGA
ACGGTCAATGAATTGTAGTTAGCACTGTCATGCGGAGAATCCCAGTCATG
GGTGCGTCTCATAAGCAAGAGCCCTCCCCGCTGACGAAGCTCAAGCGCGT
CAGTGCAGTTAGCGGAAAGACTGCTCTGCAGTTTTTCTTGGGTATTCCCT
TCACAAACGTCACAGATAGCGACCACGGAAACTCTTGTACATGACGGTTA
AGAAGTTAACGACAGTCATTAAGTATAGTTAGTCGTGGGGTTGGCGCAAC
AGGGTCGCCTTCAGCGCGCCAGAGTGGAGGCACCTCTGACCCCTCACGGG
CTGTTGTCCCGCGGGTGCGCAATGCAGATCATGCCCCCGGAGTTTCGGAA
GGGGGGGGCGCTCCGGATAGGGGGGCGGGCTTCGCCGTCTGGCGGGGCCA
ACACGGGATGTATCAGGAACGGCGCGTGGTCGAGCGACGGACGAAGGTTT
GCGCGCGCTTGCGCGCGAGGTCCTGGGACAGCTCGAGGCAGGGGAGAATC
GCGAATTGCTGGTGCCCAGCTCCATGGCCCACGTTATTCCTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2930:3190..8883-

>mRNA_H-paniculata_contig2930.7992.1 ID=mRNA_H-paniculata_contig2930.7992.1|Name=mRNA_H-paniculata_contig2930.7992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig2930:3190..8883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTACACCCAGCTAAGGTCGAGCATATACTGTGGTGAAGGGGTACACCC
AGCTAAGGTCGAGCATATACTGTGGTGAAGATCATGCCCCCGGAGTTTCG
GAAGGGGGGGGCGCTCCGGATAGGGGGGCGGGCTTCGCCGTCTGGCGGGG
CCAACACGGGATGTATCAGGAACGGCGCGTGGTCGAGCGACGGACGAAGG
TTTGCGCGCGCTTGCGCGCGAGGTCCTGGGACAGCTCGAGGCAGGGGAGA
ATCGCGAATTGCTGGTGCCCAGCTCCATGGCCCACGTTATTCCTGATCAT
GCCCCCGGAGTTTCGGAAGGGGGGGGCGCTCCGGATAGGGGGGCGGGCTT
CGCCGTCTGGCGGGGCCAACACGGGATGTATCAGGAACGGCGCGTGGTCG
AGCGACGGACGAAGGTTTGCGCGCGCTTGCGCGCGAGGTCCTGGGACAGC
TCGAGGCAGGGGAGAATCGCGAATTGCTGGTGCCCAGCTCCATGGCCCAC
GTTATTCCTG
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