mRNA_H-paniculata_contig293.7987.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 652 bits (1683), Expect = 4.770e-203 Identity = 413/849 (48.65%), Postives = 487/849 (57.36%), Query Frame = 3
Query: 447 DSLKRPRRTSAV-PEERARAHAEGKMASVLSSLMKHKHAGLFLVPVDPRTTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGDWARAWGEGCASTFEALYTAKLAPLL------------EESIWEEEPPDSPTRSGGPKVRRPSSKKLKVRLKK------GSAGPG--SMSPNPNASPDEGGFPLSAELLPTPKLKQXXXXXXXXXXXXXXXXXXAGHSGGEKVLPKIRITFNAKGTPKITPPKAGGSATATASTDVSKMAPLKMNSFSQHPQSAMAGVTPHAYTSSSGSPPLNLWGGSALAGLGKKRVRPAGSNRRQQLTDSDREGDAEGFMLPPRSRNRAPSPYP------------------------SLVIKPPEPEPVLSVEESLRRTCIKLARQVLRKTQMPFRTGPYEVTSFGSASLRAGHHDKNFIFPPGYRCTHSRFVRAH---YPGKRLVVRCDSEVMEREDDGPPVFRVEHCGQVLATAASGQEAWHAVVRLDAVLARQTVYRLLRCRSVLNRMCCSSDIIAFLERVDPSEVPNYYVRVTRPVHMRLVHDRLKRGGYLNEFAFASDMRLAWSNAKLFNHKGSELWRAADRLSGEFEALFCEWVINSQASSG-ASQGLEPPRGPWEEWNNLRYFDAYSDCKGCSVSKVVYPLATNGVNXXXXXXXXXXXXXLPELSCSTCEDKWHIACLDGPLGTSGSAG----------TWEGRPFVCRRCACISPSNIFTQVQLKLQRKQQIKYI--FRILG---SIDLAGNGPGAGADGHLGLSVPEIKNRVEGVPGADRCPLYTFKDPSQLQEEAERAAAEKAKS 2801
DSLKRPRRT+A PEER RA AE +MA V+SSLMKHKHAGLFL PVDPRT P YEKYVQTPMDLGTI +KL+AGG+ GD+ F+A VRLVF NCLAYNPPGDWARAWGE C FEA+Y AKLAPLL EE E PPD+ G KKLKVRLK G +G G S SP P + + G P S + P P K XXXXXXXXXXXXXXXXXX G ++VLPKIRITFNAKGTPKI PP AG ++ + L ++ + EE+ R+ CIK A+++LRKT +PFR GPYEV SFG S R G H K F+FPPGYRCTHSRFVR + YPGK+LVVRCDSEV+E E P+F+VEHCGQ+LA AASG EAWHA ++LD LAR+TV+RL+RC+SVLNR+CC+ D+IAFLE VDP+EVP Y+ ++TRPVHMRLV RLKRGGY+NEFAFASD+RLAWSNAKLFN +GSELW AADRLS EFEALFCEWVIN G +QG P RGPW++W LRYFD C+GC+ + A V PEL CS CED+WH CL G +G + EGRPF+C R C + + + R ++ R G SID A G G GADGHLGL P+IK RVEG+PGAD C LY FK + +E+A RAA E++K+
Sbjct: 23 DSLKRPRRTAAADPEERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPSYEKYVQTPMDLGTIDRKLQAGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEAMYNAKLAPLLAAQSDMSHMLADEEGYGE--PPDNELAGGRGNEGEGKIKKLKVRLKSSRGGADGGSGGGLTSSSPAPASQHGDWGSPASGAVRP-PSKKXXXXXXXXXXXXXXXXXXXXATGGVKQVLPKIRITFNAKGTPKIAPPAAGRDSSQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQLR--QGVAAAPSEEASRKKCIKQAQRLLRKTLLPFRFGPYEVVSFGIVSPRPGFHTKAFMFPPGYRCTHSRFVRCNSKQYPGKKLVVRCDSEVVEGERS--PLFQVEHCGQLLAEAASGIEAWHACLQLDGALARRTVFRLVRCKSVLNRLCCNEDVIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYVNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEWVINPPDGYGRGTQGNAPARGPWDDWQELRYFDNLQRCRGCAKAATKGKSAAAAVTTAEEAETARRKSMPPELVCSACEDEWHAICLGDGNNAGGGSGPAAVAAATKASLEGRPFLCPRW-CSPRRGLLSSAPRRRTRARRPTGAGSLRTRGVTESIDPADGGVGLGADGHLGLIAPDIKIRVEGLPGADSCDLYAFKSAAHRREDAGRAAVERSKA 863
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE) HSP 1 Score: 503 bits (1296), Expect = 5.020e-162 Identity = 346/794 (43.58%), Postives = 409/794 (51.51%), Query Frame = 3
Query: 453 LKRPRRTSAVPEERARAHAEGKMASVLSSLMKHKHAGLFLVPVDPRTTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGDWARAWGEGCASTFEALYTAKLAPLL------EESIWEEE----PPDSPTRSGGPKVRRPSSKKLKVRLKKGSAGPGSMSPN--------PNASPDEGGFPLSAELLPTPKLKQXXXXXXXXXXXXXXXXXXAGH--SGGEK-VLPKIRITFNAKGTPKITPPKAGGSATATASTDVSKMAPLKMNSFSQHPQSAMAGVTPHAYTSSSGSPPLNLWGGSALAGLGKKRVRPAGSNRRQQLTDSDREGDAEGFMLPPRSRNRAPSPYPSLVIKPPEP----------------------------------------------------------------------EPVLSV--EESLRRTCIKLARQVLRKTQMPFRTGPYEVTSFGSASLRAGHHDKNFIFPPGYRCTHSRFVRAHYPGKRLVVRCDSEVMEREDDGPPVFRVEHCGQVLATAASGQEAWHAVVRLDAVLARQTVYRLLRCRSVLNRMCCSSDIIAFLERVDPSEVPNYYVRVTRPVHMRLVHDRLKRGGYLNEFAFASDMRLAWSNAKLFNHKGSELWRAADRLSGEFEALFCEWVINSQASSG-ASQGLEPPRGPWEEWNNLRYFDAYSDCKGCSVSKVVYPLATNGVNXXXXXXXXXXXXXLPELSCSTCEDKWHIACL---------DGPLGTSGSA-GTWEGRPFVCRR 2522
L R R + P+ER RA AE +MA V+SSLMKHKHAGLFL PVDPRT P YEKYVQTPMDLGTI +KL+ GG+ GD+ F+A VRLVF NCLAYNPPGDWARAWGE C FEA+Y AKLAPLL + + +EE PPD G KKLKVRLK P + + G P S + P K + XXXXXXXXXXXXXXXXXX +GG K VLPKIRITFNAKGTPKI PP AG D S+ + P S G +G+ R R PS L +K + V++ EE+ R+ CIK A+++LRKT +PFR GPYEV SFG S R G H + F+FPPGYRCTHSRFVR ++ Q+LA AASG EAW A ++LD LAR+TV+RL+RC+SVLNR+CC+ D IAFLE VDP+EVP Y+ ++TRPVHMRLV RLKRGGYLNEFAFASD+RLAWSNAKLFN +GSELW AADRLS EFEALFCEWVIN G +QG P RG W++W LRYFD C+GC+ + A V PEL CS+CED+WH CL DGP + + + EGRPF+C R
Sbjct: 41 LTRVRHGNRNPQERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPGYEKYVQTPMDLGTINRKLRTGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEAMYNAKLAPLLAAQSDMSDMLADEEESGEPPDHEVAGGRGNEGEGKIKKLKVRLKNSRGXXXXXXXXXXXXXXXAPASQHADWGSPASGAVRPPSKKRXXXXXXXXXXXXXXXXXXXXXXXATGGVKQVLPKIRITFNAKGTPKIAPPAAGR--------DSSQSPXXXXXXXXXXXXXXXXXXXXXXXXXXKIARPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSW--GVRDGWS----ERQRGPSSV-VLTMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQLRQGVVAAPSEEASRKKCIKQAQRLLRKTLVPFRYGPYEVVSFGIVSPRPGFHTEAFMFPPGYRCTHSRFVRCNFK-----------------------------QLLAEAASGIEAWRACLQLDGALARRTVFRLVRCKSVLNRLCCNEDAIAFLESVDPAEVPGYHTKITRPVHMRLVDQRLKRGGYLNEFAFASDVRLAWSNAKLFNREGSELWLAADRLSREFEALFCEWVINPPDGYGRGTQGNAPARGTWDDWQELRYFDNLKGCRGCAKASTKVKSAAAAVTTAEEAETARRKSMPPELVCSSCEDEWHAICLGDGNNAGGDDGPAAVAAATKASLEGRPFLCPR 790
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA) HSP 1 Score: 176 bits (447), Expect = 3.290e-41 Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 3
Query: 1884 ARQTVYRLLRCRSVLNRMCCSSDIIAFLERVDPSEVPNYYVRVTRPVHMRLVHDRLKRGGYLNEFAFASDMRLAWSNAKLFNHKGSELWRAADRLSGEFEALFCEWVIN-SQASSGASQGLEP--PRGPWEEWNNLRYFDAYSDCKGCSVSKVVYPLATNGVNXXXXXXXXXXXXXLPELSCSTCEDKWHIACL 2456
AR + RL RC++VLN +CC +DI FLE VDP+E P+Y + V RPV+MRLV +RLK G Y+NEF+FA+DMRLA++NA+ +N +GSELWRAA ++ +FE +F +WV+ + A AS G EP PRG W++W LRYFDA C C + P A LP C +CED+WH ACL
Sbjct: 572 ARLSANRLRRCKAVLNAVCCHADINPFLEAVDPAEAPDYALVVRRPVYMRLVDERLKAGMYVNEFSFAADMRLAFANAQRYNAEGSELWRAAAAIARDFERMFLQWVVAPADAGVDASSG-EPRAPRGAWDDWEVLRYFDAVPGCAKCERAAAARPRAAEAA-------LEAEEALLP--LCCSCEDRWHAACL 755
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A482RQT6_9ARCH (Bromo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQT6_9ARCH) HSP 1 Score: 127 bits (318), Expect = 1.010e-27 Identity = 86/255 (33.73%), Postives = 124/255 (48.63%), Query Frame = 3
Query: 1572 VLRKTQMPF--RTGPYEVTSFGSASLRAGHHDKNFIFPPGYRCTHSRFVRAHYPGKR------LVVRCDSEVMEREDDGP-PVFRVEHC---GQVLATAASGQEAWHAVVRLDAVLARQTVYRLLRCRSVLNRMCCSSDIIAFLERVDPSEVPN--YYVRVTRPVHMRLVHDRLKRGGYLNEFAFASDMRLAWSNAKLFNHKGSELWRAADRLSGEFEALFCEWVINSQASSGASQGLEPPRGPWEEWNNLRYFD 2294
++R T +PF G E+ SFGS +F+ P Y + + + VR S V G P+F V C G V+A A+S +AW V + + + + RCR+VLNR+C S D FL+ VDP YY + P+ +R VH RL RG Y +EF FA D+RL + N ++FN + S L+ A+ RLS +FE LFC WV+N + RGPW++W ++ D
Sbjct: 45 LVRSTPLPFVLEPGLLEIRSFGSLVKGISTLFCDFVCPVNYTTASDLAIALAHSNNSAGATSLVEVRLLSVVKPAVSQGQGPIFSV--CLEKGTVVAEASSPLDAWQGVHGREVQVLQSMAGTVDRCRAVLNRLCISPDAPPFLDAVDPQSDIGVAYYEAIKAPMWIREVHSRLLRGDYESEFDFAWDVRLVFRNCQIFNREDSALYMASQRLSMQFETLFCAWVLNVVDKDVTQRA----RGPWDDWQVMQSLD 293
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A7S0D7S0_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D7S0_MICPS) HSP 1 Score: 83.6 bits (205), Expect = 9.890e-14 Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 3
Query: 483 PEERARAH---AEGKMASVLSSLMKHKHAGLFLVPVD--PRTTPDYEKYVQTPMDLGTIQKKLKAGGY--VGDVSAFSADVRLVFDNCLAYNPPGDWARAWGE 770
PEE+A H A + ++L++L KH+ A +F PVD PDY + V+TPMDLGT+++KL+ G Y VG S F AD +L F+NCL YNP G AR GE
Sbjct: 178 PEEKAHVHKTLARFRCGALLAALQKHECALIFSEPVDHVKLGIPDYPEIVKTPMDLGTVKRKLENGEYDEVGP-SGFVADAQLAFENCLLYNPRGSEARQMGE 279
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A1D6LET2_MAIZE (Transcription factor GTE8 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6LET2_MAIZE) HSP 1 Score: 85.1 bits (209), Expect = 3.000e-13 Identity = 55/130 (42.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query: 522 ASVLSSLMKHKHAGLFLVPVD--PRTTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGDWARAWGEGCASTFEALYTAKLAPLLEESIWEEEPPDSPTRSGGPKVRRPSSK 905
A++L S+M H AG FLVPVD PDY + V+ PMDLGTIQKKLKAG Y F+ADVRL F N + YNP + + + FE + L+E+ + +P D P P VR P+ K
Sbjct: 175 ANLLKSIMSHVWAGPFLVPVDIVKLNIPDYFQIVKQPMDLGTIQKKLKAGMY-STPREFAADVRLTFSNAMNYNPVNNDVHLMAKTLSKNFETRWK-----LIEKKL--PKPDDKPQPVEKPPVREPTEK 296
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A8H4BPQ4_MUCCL (Bromodomain-containing protein n=3 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BPQ4_MUCCL) HSP 1 Score: 84.7 bits (208), Expect = 3.350e-13 Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query: 531 LSSLMKHKHAGLFLVPVDPR--TTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGD 749
+ SL KHK A FL PVDP PDY +++PMDLGT+++KLKA Y DV+AF ADV+LVF NC YN PGD
Sbjct: 13 IKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVERKLKADQYP-DVAAFKADVQLVFQNCYLYNNPGD 86
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A1D6LET5_MAIZE (Transcription factor GTE8 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6LET5_MAIZE) HSP 1 Score: 85.1 bits (209), Expect = 3.440e-13 Identity = 55/130 (42.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query: 522 ASVLSSLMKHKHAGLFLVPVD--PRTTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGDWARAWGEGCASTFEALYTAKLAPLLEESIWEEEPPDSPTRSGGPKVRRPSSK 905
A++L S+M H AG FLVPVD PDY + V+ PMDLGTIQKKLKAG Y F+ADVRL F N + YNP + + + FE + L+E+ + +P D P P VR P+ K
Sbjct: 175 ANLLKSIMSHVWAGPFLVPVDIVKLNIPDYFQIVKQPMDLGTIQKKLKAGMY-STPREFAADVRLTFSNAMNYNPVNNDVHLMAKTLSKNFETRWK-----LIEKKL--PKPDDKPQPVEKPPVREPTEK 296
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A1D6LET0_MAIZE (Transcription factor GTE8 n=6 Tax=Andropogoneae TaxID=147429 RepID=A0A1D6LET0_MAIZE) HSP 1 Score: 85.1 bits (209), Expect = 3.720e-13 Identity = 55/130 (42.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query: 522 ASVLSSLMKHKHAGLFLVPVD--PRTTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGDWARAWGEGCASTFEALYTAKLAPLLEESIWEEEPPDSPTRSGGPKVRRPSSK 905
A++L S+M H AG FLVPVD PDY + V+ PMDLGTIQKKLKAG Y F+ADVRL F N + YNP + + + FE + L+E+ + +P D P P VR P+ K
Sbjct: 175 ANLLKSIMSHVWAGPFLVPVDIVKLNIPDYFQIVKQPMDLGTIQKKLKAGMY-STPREFAADVRLTFSNAMNYNPVNNDVHLMAKTLSKNFETRWK-----LIEKKL--PKPDDKPQPVEKPPVREPTEK 296
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Match: A0A0C9MZ53_9FUNG (Uncharacterized protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MZ53_9FUNG) HSP 1 Score: 84.3 bits (207), Expect = 6.580e-13 Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 3
Query: 507 AEGKMAS-VLSSLMKHKHAGLFLVPVDPR--TTPDYEKYVQTPMDLGTIQKKLKAGGYVGDVSAFSADVRLVFDNCLAYNPPGD 749
AE K S + SL KHK A FL PVDP PDY +++PMDLGT++KKLKA Y +V+AF ADV+LVF NC YN PGD
Sbjct: 41 AEKKWCSQTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVEKKLKADMYP-NVAAFKADVQLVFQNCYLYNNPGD 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig293.7987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig293.7987.1 >prot_H-paniculata_contig293.7987.1 ID=prot_H-paniculata_contig293.7987.1|Name=mRNA_H-paniculata_contig293.7987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=828bp MASRQPHQGYGSFNEGGDDSWEEAGVSAGSGGGDSLKRPRRTSAVPEERAback to top mRNA from alignment at H-paniculata_contig293:1043..15007- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig293.7987.1 ID=mRNA_H-paniculata_contig293.7987.1|Name=mRNA_H-paniculata_contig293.7987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13965bp|location=Sequence derived from alignment at H-paniculata_contig293:1043..15007- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig293:1043..15007- >mRNA_H-paniculata_contig293.7987.1 ID=mRNA_H-paniculata_contig293.7987.1|Name=mRNA_H-paniculata_contig293.7987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4968bp|location=Sequence derived from alignment at H-paniculata_contig293:1043..15007- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |