mRNA_H-paniculata_contig29263.7980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29263.7980.1
Unique NamemRNA_H-paniculata_contig29263.7980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig29263.7980.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.910e-12
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 LESAIEEARTEGLPPNGVAELRKIMNSHFHSFRRALS-GDPPADVEPLRVHVPADARAARARPRPMSRDKAEWLDKHFTKLAQAGMVFANPQARFSSVAM 297
            L+SA+  A   GL    V  LR I++  +++FRR L  GDPPA+VEPLRV +   AR  +ARPR  +  K  WL       A  G+VF N QA ++S AM
Sbjct:  710 LDSAVSSAAAAGLEEPHVGRLRGIISERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAM 802
[Close]
BLAST of mRNA_H-paniculata_contig29263.7980.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.030e-10
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:    1 LESAIEEARTEGLPPNGVAELRKIMNSHFHSFRRALS-GDPPADVEPLRVHVPADARAARARPRPMSRDKAEWLDKHFTKLAQAGMVFANPQARFSSVAM 297
            L+SA+  A   GL    V  LR I+   +++FR  +  GDPPA+VEPLRV +   A   +ARPR  +  K  WL          G+VF N QA  +S AM
Sbjct:  484 LDSAVSSAVVAGLDEPHVGRLRSIIRERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAM 583
[Close]
BLAST of mRNA_H-paniculata_contig29263.7980.1 vs. uniprot
Match: A0A2P4XU97_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU97_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 8.640e-6
Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   46 NGVAELRKIMNSHFHSFRRALSGDPPADVEPLRVHVPADARAARARPRPMSRDKAEWLDKHFTKLAQAGMVFANPQARFSS 288
            +   +LR I+++ +  +R  L  DPPA+V PL V +   AR  + +PR       ++L +   +L + G+V+ NPQ+R+SS
Sbjct:   41 SATEQLRTIVHA-YDVWRLELRADPPANVPPLEVRLRDGARPTKCKPRKYPPHIRKFLHEFNARLVELGLVYENPQSRWSS 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29263.7980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE3.910e-1244.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK9_9PHAE4.030e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XU97_9STRA8.640e-633.33Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29263contigH-paniculata_contig29263:1271..1573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog67593.Physo134318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition
EggNOG OGs2QT1S@2759,COG2801@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.2426043-CDS-H-paniculata_contig29263:1270..15731622929895.2426043-CDS-H-paniculata_contig29263:1270..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29263 1271..1573 -
1691481059.2735417-CDS-H-paniculata_contig29263:1270..15731691481059.2735417-CDS-H-paniculata_contig29263:1270..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29263 1271..1573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29263.7980.1prot_H-paniculata_contig29263.7980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29263 1271..1573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29263.7980.1

>prot_H-paniculata_contig29263.7980.1 ID=prot_H-paniculata_contig29263.7980.1|Name=mRNA_H-paniculata_contig29263.7980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
LESAIEEARTEGLPPNGVAELRKIMNSHFHSFRRALSGDPPADVEPLRVH
VPADARAARARPRPMSRDKAEWLDKHFTKLAQAGMVFANPQARFSSVAMV
V
back to top

mRNA from alignment at H-paniculata_contig29263:1271..1573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29263.7980.1 ID=mRNA_H-paniculata_contig29263.7980.1|Name=mRNA_H-paniculata_contig29263.7980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig29263:1271..1573- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGTCGGCGATAGAAGAGGCGAGGACCGAGGGTTTGCCGCCGAACGG
AGTCGCGGAGTTGAGAAAAATTATGAACTCCCACTTCCATTCGTTTCGGC
GGGCGCTGAGCGGGGATCCACCGGCGGACGTGGAACCGCTGCGGGTGCAT
GTACCCGCGGACGCGCGAGCCGCCCGGGCGCGGCCGCGCCCAATGTCGCG
CGACAAGGCGGAATGGCTGGATAAACATTTCACGAAGTTGGCACAGGCCG
GTATGGTGTTCGCAAACCCCCAGGCAAGGTTCAGCAGCGTGGCGATGGTA
GTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig29263:1271..1573-

>mRNA_H-paniculata_contig29263.7980.1 ID=mRNA_H-paniculata_contig29263.7980.1|Name=mRNA_H-paniculata_contig29263.7980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig29263:1271..1573- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGTCGGCGATAGAAGAGGCGAGGACCGAGGGTTTGCCGCCGAACGG
AGTCGCGGAGTTGAGAAAAATTATGAACTCCCACTTCCATTCGTTTCGGC
GGGCGCTGAGCGGGGATCCACCGGCGGACGTGGAACCGCTGCGGGTGCAT
GTACCCGCGGACGCGCGAGCCGCCCGGGCGCGGCCGCGCCCAATGTCGCG
CGACAAGGCGGAATGGCTGGATAAACATTTCACGAAGTTGGCACAGGCCG
GTATGGTGTTCGCAAACCCCCAGGCAAGGTTCAGCAGCGTGGCGATGGTA
GTGTTGGAGTCGGCGATAGAAGAGGCGAGGACCGAGGGTTTGCCGCCGAA
CGGAGTCGCGGAGTTGAGAAAAATTATGAACTCCCACTTCCATTCGTTTC
GGCGGGCGCTGAGCGGGGATCCACCGGCGGACGTGGAACCGCTGCGGGTG
CATGTACCCGCGGACGCGCGAGCCGCCCGGGCGCGGCCGCGCCCAATGTC
GCGCGACAAGGCGGAATGGCTGGATAAACATTTCACGAAGTTGGCACAGG
CCGGTATGGTGTTCGCAAACCCCCAGGCAAGGTTCAGCAGCGTGGCGATG
GTAGTG
back to top