mRNA_H-paniculata_contig29247.7976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig29247.7976.1
Unique Name	mRNA_H-paniculata_contig29247.7976.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.160e-5
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEEC 159
            TCF CG++GH++R+C  R +G+   G  +     G  +WC  H T  +SDEEC
Sbjct:  108 TCFGCGEKGHIRRNCLQR-RGK---GRQRKTKPAGATKWCCFHFTTKNSDEEC 156

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BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9MJB2_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9MJB2_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.350e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9K6X4_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6X4_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.360e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  176 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 213

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9IZG0_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IZG0_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.650e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

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BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A6S7KN23_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=7 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KN23_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.690e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A6S7I9F2_PARCT (Myosin heavy fast skeletal muscle (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I9F2_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.710e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9EP18_PARCT (Myosin heavy fast skeletal muscle n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EP18_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.750e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9HR84_PARCT (Myosin heavy fast skeletal muscle n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HR84_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.780e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A6S7FHS0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FHS0_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.800e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:  212 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 249

[Close]

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Match: A0A7D9HER7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HER7_PARCT)

HSP 1 Score: 47.8 bits (112), Expect = 8.800e-5
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 1

Query:    1 TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSDEECR 162
            TC+ CGKRGHL R+C A+++                 +WC+ H +  HSD  CR
Sbjct:   31 TCYGCGKRGHLVRECPAKSE----------------KKWCNYHKSTTHSDSTCR 68

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig29247.7976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
D7G6Q1_ECTSI	3.160e-5	41.51	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A7D9MJB2_PARCT	8.350e-5	37.04	Myosin heavy fast skeletal muscle (Fragment) n=1 T...	[more]
A0A7D9K6X4_PARCT	8.360e-5	37.04	Myosin heavy fast skeletal muscle (Fragment) n=2 T...	[more]
A0A7D9IZG0_PARCT	8.650e-5	37.04	Myosin heavy fast skeletal muscle (Fragment) n=4 T...	[more]
A0A6S7KN23_PARCT	8.690e-5	37.04	Myosin heavy fast skeletal muscle (Fragment) n=7 T...	[more]
A0A6S7I9F2_PARCT	8.710e-5	37.04	Myosin heavy fast skeletal muscle (Fragment) n=4 T...	[more]
A0A7D9EP18_PARCT	8.750e-5	37.04	Myosin heavy fast skeletal muscle n=2 Tax=Paramuri...	[more]
A0A7D9HR84_PARCT	8.780e-5	37.04	Myosin heavy fast skeletal muscle n=3 Tax=Paramuri...	[more]
A0A6S7FHS0_PARCT	8.800e-5	37.04	Retrovirus-related Pol poly from transposon TNT 1-...	[more]
A0A7D9HER7_PARCT	8.800e-5	37.04	Retrovirus-related Pol poly from transposon TNT 1-...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig29247	contig	H-paniculata_contig29247:41..208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	168
Cds size	168
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929894.6945934-CDS-H-paniculata_contig29247:40..208	1622929894.6945934-CDS-H-paniculata_contig29247:40..208	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig29247 41..208 +
1691481059.0826929-CDS-H-paniculata_contig29247:40..208	1691481059.0826929-CDS-H-paniculata_contig29247:40..208	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig29247 41..208 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig29247.7976.1	prot_H-paniculata_contig29247.7976.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig29247 41..208 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig29247:41..208+
coding sequence from alignment at H-paniculata_contig29247:41..208+

protein sequence of mRNA_H-paniculata_contig29247.7976.1

>prot_H-paniculata_contig29247.7976.1 ID=prot_H-paniculata_contig29247.7976.1|Name=mRNA_H-paniculata_contig29247.7976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
TCFFCGKRGHLKRDCTARNKGQAVTGEHKLDGGDGKPQWCSLHMTNNHSD
EECRVL

mRNA from alignment at H-paniculata_contig29247:41..208+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig29247.7976.1 ID=mRNA_H-paniculata_contig29247.7976.1|Name=mRNA_H-paniculata_contig29247.7976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig29247:41..208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGTTTCTTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGC
TCGGAATAAGGGCCAAGCGGTGACCGGGGAACACAAATTAGATGGGGGAG
ACGGGAAACCACAATGGTGCTCTCTCCACATGACCAACAACCACAGTGAC
GAAGAATGCCGTGTCTTG

Coding sequence (CDS) from alignment at H-paniculata_contig29247:41..208+

>mRNA_H-paniculata_contig29247.7976.1 ID=mRNA_H-paniculata_contig29247.7976.1|Name=mRNA_H-paniculata_contig29247.7976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig29247:41..208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGTTTCTTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGC
TCGGAATAAGGGCCAAGCGGTGACCGGGGAACACAAATTAGATGGGGGAG
ACGGGAAACCACAATGGTGCTCTCTCCACATGACCAACAACCACAGTGAC
GAAGAATGCCGTGTCTTGACATGTTTCTTTTGCGGGAAGCGAGGCCACCT
GAAAAGAGACTGCACCGCTCGGAATAAGGGCCAAGCGGTGACCGGGGAAC
ACAAATTAGATGGGGGAGACGGGAAACCACAATGGTGCTCTCTCCACATG
ACCAACAACCACAGTGACGAAGAATGCCGTGTCTTG