mRNA_H-paniculata_contig29230.7974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29230.7974.1
Unique NamemRNA_H-paniculata_contig29230.7974.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A6H5J891_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J891_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.160e-29
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 MTTKDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRPS 186
            MTT DRECSVILTTHSMEEAESLCN IGIMVNGRLRCLGSTQHLKHRFG GFEADMKL  PS
Sbjct:  308 MTTTDRECSVILTTHSMEEAESLCNNIGIMVNGRLRCLGSTQHLKHRFGSGFEADMKLQPPS 369
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.880e-29
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 MTTKDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRPS 186
            MTT DRECSVILTTHSMEEAESLCN IGIMVNGRLRCLGSTQHLKHRFG GFEADMKL  PS
Sbjct: 1957 MTTTDRECSVILTTHSMEEAESLCNNIGIMVNGRLRCLGSTQHLKHRFGSGFEADMKLQPPS 2018
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A482T2X8_9ARCH (ATP-binding cassette domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2X8_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 1.590e-20
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 MTTKDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRPSD 189
            M+T +  CSV+LTTHSMEEAE+LC+ IG+MVNG+L+CLGS QHLKHRFG+GFE  +KL  P +
Sbjct:  948 MSTLESRCSVMLTTHSMEEAEALCSRIGVMVNGQLQCLGSAQHLKHRFGQGFELTLKLLTPPE 1010
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A7S3UPT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT9_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 6.490e-20
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   10 KDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRP 183
            +D   +V+LTTHSMEEAE+LC+ IGIMVNGRL C+G+ QHL+ +FGRGFEAD+KL  P
Sbjct:   53 EDPRRAVVLTTHSMEEAEALCHRIGIMVNGRLCCIGTPQHLRSKFGRGFEADVKLRAP 110
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A067BNL9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BNL9_SAPPC)

HSP 1 Score: 90.1 bits (222), Expect = 1.420e-19
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   10 KDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRPSD 189
            +++ CSVILTTHSMEE ++LC  IGI+V+G+L+CLG+ QHLKH+FGRGF  D+KL  P D
Sbjct: 1509 QEKSCSVILTTHSMEECQALCTRIGILVSGQLKCLGTAQHLKHKFGRGFTLDLKLESPED 1568
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A812QND9_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QND9_SYMMI)

HSP 1 Score: 87.0 bits (214), Expect = 1.710e-18
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MTTKDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKL 174
            ++T+D  CS+ILTTHSMEEAE+LC  IGIMVNG LRCLGS  HLK RFG G+E D+KL
Sbjct:  737 ISTQDAICSIILTTHSMEEAEALCTRIGIMVNGSLRCLGSGTHLKMRFGDGYEVDVKL 794
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A1W0A1A4_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1A4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.230e-18
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   10 KDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKLHRPSD 189
            K++ CSVILTTHSMEE ++LC  IGI+V+G+L+CLG+ QHLK +FGRGF  D+KL  P +
Sbjct:  284 KEKTCSVILTTHSMEECQALCTRIGILVSGQLKCLGTAQHLKQKFGRGFTVDLKLKTPDE 343
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A7S4DQK2_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DQK2_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 3.180e-18
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   16 RECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKL 174
            R C VILTTHSMEE E+LC+ IGIMV GRLRCLGSTQHLK+RFG+G+  + KL
Sbjct:  729 RRCCVILTTHSMEECEALCSRIGIMVGGRLRCLGSTQHLKNRFGKGYNLEAKL 781
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: A0A067BSN7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BSN7_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 3.190e-18
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   10 KDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKL 174
            +++ CSVILTTHSMEE ++LC  IGI+V+G+L+CLG+ QHLKH+FGRGF  D+KL
Sbjct: 1498 QEKSCSVILTTHSMEECQALCTRIGILVSGQLKCLGTAQHLKHKFGRGFTLDLKL 1552
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BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Match: T0QF15_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QF15_SAPDV)

HSP 1 Score: 86.3 bits (212), Expect = 3.190e-18
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   10 KDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGRGFEADMKL 174
            +++ CSVILTTHSMEE ++LC  IGI+V+G+L+CLG+ QHLKH+FGRGF  D+KL
Sbjct: 1510 QEKSCSVILTTHSMEECQALCTRIGILVSGQLKCLGTAQHLKHKFGRGFTLDLKL 1564
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29230.7974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J891_9PHAE3.160e-2991.94ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FL55_ECTSI4.880e-2991.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482T2X8_9ARCH1.590e-2066.67ATP-binding cassette domain-containing protein n=1... [more]
A0A7S3UPT9_HETAK6.490e-2067.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067BNL9_SAPPC1.420e-1963.33Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A812QND9_SYMMI1.710e-1870.69ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A1W0A1A4_9STRA2.230e-1861.67ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thr... [more]
A0A7S4DQK2_9EUKA3.180e-1873.58Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A067BSN7_SAPPC3.190e-1865.45Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QF15_SAPDV3.190e-1865.45Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29230contigH-paniculata_contig29230:63..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.1e-24
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size190
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.5839977-CDS-H-paniculata_contig29230:62..1611622929894.5839977-CDS-H-paniculata_contig29230:62..161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29230 63..161 -
1691481059.0494545-CDS-H-paniculata_contig29230:62..1611691481059.0494545-CDS-H-paniculata_contig29230:62..161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29230 63..161 -
1622929894.6003983-CDS-H-paniculata_contig29230:583..6731622929894.6003983-CDS-H-paniculata_contig29230:583..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29230 584..673 -
1691481059.0619442-CDS-H-paniculata_contig29230:583..6731691481059.0619442-CDS-H-paniculata_contig29230:583..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29230 584..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29230.7974.1prot_H-paniculata_contig29230.7974.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29230 63..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29230.7974.1

>prot_H-paniculata_contig29230.7974.1 ID=prot_H-paniculata_contig29230.7974.1|Name=mRNA_H-paniculata_contig29230.7974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MTTKDRECSVILTTHSMEEAESLCNIIGIMVNGRLRCLGSTQHLKHRFGR
GFEADMKLHRPSD
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mRNA from alignment at H-paniculata_contig29230:63..673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29230.7974.1 ID=mRNA_H-paniculata_contig29230.7974.1|Name=mRNA_H-paniculata_contig29230.7974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=611bp|location=Sequence derived from alignment at H-paniculata_contig29230:63..673- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACGAAGGACAGGGAATGCAGCGTTATCCTCACGACGCACAGTAT
GGAGGAGGCGGAGTCACTCTGCAACATAATTGGAATTATGGTGAGATTCG
TTGGGAATATCTCAAAAACGTCCGAAGTGTGCGACATGCTCGTATCAAGA
GCCTTGTAGGCCTCAGGAAGGCTAGACGATGTCTTACTTCATTGGTAGAG
AACTCTCAACTACAAAGCTGGGAGTGTGCTACAGGCCTGTAAAATGTTCG
TGTTTGAAAGCACGACGGAATTACGCTGGAATTGCTTTCATTCCACTTTC
GCCTTGCCCGAGGCGATGCCATCCGTTTTTGCAGACCTCGAACCTGCACG
GCCATGCTCATTTTCATTGCCAAGCATTTAATAAGTATCCAAGTCCGTTG
GAAATTTGCGCATCACACTCACCGGCTTCTGTTCGTATATGGATCTTCTA
GCGCTAGTTGTCAGCTGTAAGTGAAGCGCTGTTACTACCAACGGACGAAC
GGACTAAATCAGGTGAACGGAAGGCTTCGTTGTTTGGGCTCAACGCAGCA
CCTCAAGCATCGGTTCGGCAGGGGGTTCGAGGCGGACATGAAGCTACACC
GGCCTTCGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29230:63..673-

>mRNA_H-paniculata_contig29230.7974.1 ID=mRNA_H-paniculata_contig29230.7974.1|Name=mRNA_H-paniculata_contig29230.7974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig29230:63..673- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACGAAGGACAGGGAATGCAGCGTTATCCTCACGACGCACAGTAT
GGAGGAGGCGGAGTCACTCTGCAACATAATTGGAATTATGATGACTACGA
AGGACAGGGAATGCAGCGTTATCCTCACGACGCACAGTATGGAGGAGGCG
GAGTCACTCTGCAACATAATTGGAATTATGGTGAACGGAAGGCTTCGTTG
TTTGGGCTCAACGCAGCACCTCAAGCATCGGTTCGGCAGGGGGTTCGAGG
CGGACATGAAGCTACACCGGCCTTCGGATGTGAACGGAAGGCTTCGTTGT
TTGGGCTCAACGCAGCACCTCAAGCATCGGTTCGGCAGGGGGTTCGAGGC
GGACATGAAGCTACACCGGCCTTCGGAT
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