mRNA_H-paniculata_contig29223.7972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29223.7972.1
Unique NamemRNA_H-paniculata_contig29223.7972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 8.960e-49
Identity = 79/145 (54.48%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            M+EAGHRGV AT++RL  YC W  M+ +V EFV QCLHC+DS+SG  VPRP GE +HG   GEV HFD+LH+G S PL    +    G  YLLV++DD+S + W+EP   CTA++ A  +L WC   G P V+VSDTA HFKN +
Sbjct:  424 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 568          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 9.270e-49
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            M+EAGHRG  AT+ RL+ YC W  ME +V +FV QCLHC+DS++G +VPRPLGE +HGT  GEV HFD+L++G S PL +  +    G  Y+LV++DD+S +VWLEP   CTA + A  +L WC + G P V+VSDTA HFKN +
Sbjct: 1302 MKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHM 1446          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.200e-48
Identity = 79/145 (54.48%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    1 MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            M+EAGHRGV AT++RL  YC W  M+ +V EFV QCLHC+DS+SG  VPRP GE +HG   GEV HFD+LH+G S PL    +    G  YLLV++DD+S + W+EP   CTA++ A  +L WC   G P V+VSDTA HFKN +
Sbjct: 1200 MKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 1344          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.180e-38
Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   73 MEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            M+ +V EFV QCLHC+DS+SG  VPRP GE +HG   GEV HFD+LH+G S PL    +    G  YLLV++DD+S + W+EP   CTA++ A  +L WC   G P V+VSDTA HFKN +
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSV 121          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.500e-33
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   73 MEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPL-KEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTA 411
            ME +V +FV  CL+C+DS++G +VP+PLGE  HGT  GEV  FD+L++G S  L K+      G  Y+LV++DD+S +VWLEP   CTA++ +  +L WC   G P V+VSDTA
Sbjct:    1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 114 bits (284), Expect = 1.410e-26
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   13 GHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            GHRG+DAT + +     W  ++ +V   V  C HC+ +R+G  VPRPLG  +HG    EV H DFL++G     K+         YLL+L DD+S Y+WL P    TA  AA  +  W  VFG     VSD   HFKN L
Sbjct:  299 GHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSL 429          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6A4ZJ35_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ35_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.900e-24
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   10 AGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            AGHR V+AT   +A    W  ++A+V  FV  CLHC+    G  VPRP GE LH T+  E+ HFD++    S P  E     GG  ++LV+ DD+SG+V L  +   TA   A+ ++ W  +FG    +VSD   HFKN L
Sbjct:  888 AGHRRVEATTASVADMFDWPTLKADVKNFVRACLHCMVV-DGESVPRPWGEALHATKPNELIHFDWV----SFPEAE-----GGLKHVLVIKDDMSGFVRLHASASATAVETASALMEWFGLFGVVKTWVSDCGSHFKNEL 1018          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: UPI001E1DBC25 (uncharacterized protein LOC123544734 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC25)

HSP 1 Score: 104 bits (260), Expect = 1.070e-23
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   46 LAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            + A   WD +  +V  F   CLHC  +  G R PRPLG+ LH +   EV HFD+L++G S           G  YLL++ DD+SGY+WL PA    +      +  W   FG   ++VSD   HFKN++
Sbjct:    7 IEAVFYWDTLREDVLTFCNTCLHCRSTVGGHRTPRPLGQALHASLPNEVIHFDYLYMGPSGV---------GYKYLLLIKDDLSGYLWLVPAKAADSASTVDALTLWFATFGVAHIWVSDQGSHFKNQV 126          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A2P4WZY3_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZY3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.890e-23
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    4 QEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            + +GHRG   T   + ++C W  +  +VA+FV  C+HC+ +R G RVPRP G  LH T+  EV HFD+L L   +             Y+LVL D++SGYV L P     A   A ++L W   +G    +VSD   HFKN +
Sbjct: 1164 RHSGHRGERTTAAAVGSWCWWPDLAKDVAQFVRSCIHCVATRDG-RVPRPYGPALHATKPNEVLHFDYLTLPEDEDTHNK--------YVLVLKDNLSGYVELFPTAGPDAASCAVSLLSWFHRYGIVKRWVSDQGTHFKNEV 1297          
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Match: A0A6A3GSN5_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GSN5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.020e-23
Identity = 53/141 (37.59%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   10 AGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPRPLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL 432
            AGHRG   T   L     W  +  +VA FV +C+HC+ + +G ++PRPLGE L  T+  E  HFDFL +             GG  Y+LVL D++SGYV L   ++ T+     ++L W   FG    +VSD   HF+N++
Sbjct:  248 AGHRGAKTTAKALEDLFSWRSLRKDVAVFVSECMHCMATATG-KIPRPLGETLRATKPNEQLHFDFLSMAEG---------AGGLKYVLVLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNQV 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29223.7972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE8.960e-4954.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5A5_9PHAE9.270e-4954.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE3.200e-4854.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE5.180e-3852.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9M0_9PHAE3.500e-3349.12Integrase catalytic domain-containing protein n=1 ... [more]
R7Q542_CHOCR1.410e-2641.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6A4ZJ35_9STRA9.900e-2441.13Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]
UPI001E1DBC251.070e-2337.98uncharacterized protein LOC123544734 n=1 Tax=Merce... [more]
A0A2P4WZY3_9STRA1.890e-2338.46RNA-directed DNA polymerase n=1 Tax=Phytophthora p... [more]
A0A6A3GSN5_9STRA2.020e-2337.59Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29223contigH-paniculata_contig29223:2632..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog4792.ETI57041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.4167619-CDS-H-paniculata_contig29223:2631..30631622929894.4167619-CDS-H-paniculata_contig29223:2631..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29223 2632..3063 +
1691481058.9861639-CDS-H-paniculata_contig29223:2631..30631691481058.9861639-CDS-H-paniculata_contig29223:2631..3063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29223 2632..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29223.7972.1prot_H-paniculata_contig29223.7972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29223 2632..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29223.7972.1

>prot_H-paniculata_contig29223.7972.1 ID=prot_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MQEAGHRGVDATVNRLAAYCVWDGMEANVAEFVGQCLHCLDSRSGSRVPR
PLGELLHGTEVGEVFHFDFLHLGTSDPLKEHEVIRGGCPYLLVLLDDVSG
YVWLEPALKCTAKVAAATMLRWCTVFGAPGVFVSDTAHHFKNRL
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mRNA from alignment at H-paniculata_contig29223:2632..3063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29223.7972.1 ID=mRNA_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig29223:2632..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAGGCGGGCCACCGGGGCGTGGACGCTACGGTCAACCGTCTTGC GGCATACTGCGTATGGGACGGAATGGAGGCGAATGTGGCGGAGTTTGTCG GGCAGTGTTTGCATTGTTTGGATTCCAGGTCAGGGTCGCGAGTGCCCCGC CCGTTAGGCGAGCTGTTGCACGGCACGGAGGTGGGGGAGGTATTTCACTT CGACTTCCTGCATCTGGGCACGAGTGACCCGCTCAAGGAGCACGAGGTGA TCCGCGGGGGCTGCCCATACCTTCTCGTTTTGCTAGATGATGTCAGCGGT TACGTGTGGCTAGAGCCGGCGCTGAAATGCACAGCGAAAGTGGCTGCCGC CACCATGTTGAGGTGGTGCACGGTGTTTGGAGCGCCTGGGGTGTTCGTCA GCGACACCGCCCATCATTTCAAGAACCGACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig29223:2632..3063+

>mRNA_H-paniculata_contig29223.7972.1 ID=mRNA_H-paniculata_contig29223.7972.1|Name=mRNA_H-paniculata_contig29223.7972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig29223:2632..3063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAGGCGGGCCACCGGGGCGTGGACGCTACGGTCAACCGTCTTGC
GGCATACTGCGTATGGGACGGAATGGAGGCGAATGTGGCGGAGTTTGTCG
GGCAGTGTTTGCATTGTTTGGATTCCAGGTCAGGGTCGCGAGTGCCCCGC
CCGTTAGGCGAGCTGTTGCACGGCACGGAGGTGGGGGAGGTATTTCACTT
CGACTTCCTGCATCTGGGCACGAGTGACCCGCTCAAGGAGCACGAGGTGA
TCCGCGGGGGCTGCCCATACCTTCTCGTTTTGCTAGATGATGTCAGCGGT
TACGTGTGGCTAGAGCCGGCGCTGAAATGCACAGCGAAAGTGGCTGCCGC
CACCATGTTGAGGTGGTGCACGGTGTTTGGAGCGCCTGGGGTGTTCGTCA
GCGACACCGCCCATCATTTCAAGAACCGACTCATGCAGGAGGCGGGCCAC
CGGGGCGTGGACGCTACGGTCAACCGTCTTGCGGCATACTGCGTATGGGA
CGGAATGGAGGCGAATGTGGCGGAGTTTGTCGGGCAGTGTTTGCATTGTT
TGGATTCCAGGTCAGGGTCGCGAGTGCCCCGCCCGTTAGGCGAGCTGTTG
CACGGCACGGAGGTGGGGGAGGTATTTCACTTCGACTTCCTGCATCTGGG
CACGAGTGACCCGCTCAAGGAGCACGAGGTGATCCGCGGGGGCTGCCCAT
ACCTTCTCGTTTTGCTAGATGATGTCAGCGGTTACGTGTGGCTAGAGCCG
GCGCTGAAATGCACAGCGAAAGTGGCTGCCGCCACCATGTTGAGGTGGTG
CACGGTGTTTGGAGCGCCTGGGGTGTTCGTCAGCGACACCGCCCATCATT
TCAAGAACCGACTC
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