mRNA_H-paniculata_contig2922.7970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2922.7970.1
Unique NamemRNA_H-paniculata_contig2922.7970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: D7FNP4_ECTSI (Putative serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP4_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.400e-80
Identity = 139/189 (73.54%), Postives = 155/189 (82.01%), Query Frame = 3 
Query:  243 KEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKGKPANTESWAAPGQHGREESSEDDEM-------MQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQR 788
            KEA+ EAFAAADKEFIATSRLPEAGSTAT+CL+LGPR+Y+ANVGDSRTVLCR GK+R+AS DHKPSRADE+ERV +AGGFVAHRRVMGELAVSRAFGDSEFKG+P             RE + + D M        QLITAEPEFLVSEIT QD+F+ LACDG+FDVLTSEEVV+NV EKMK H DAQR
Sbjct:  145 KEAISEAFAAADKEFIATSRLPEAGSTATTCLVLGPRLYMANVGDSRTVLCRGGKVRMASNDHKPSRADEQERVQRAGGFVAHRRVMGELAVSRAFGDSEFKGRPGKGGGSGGRASANREGALDADAMEERETAYAQLITAEPEFLVSEITPQDEFLVLACDGVFDVLTSEEVVANVYEKMKIHADAQR 333
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A836CBM8_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.070e-59
Identity = 117/224 (52.23%), Postives = 150/224 (66.96%), Query Frame = 3 
Query:  204 DAGGPWEALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKGKPANTESWAAPGQHGREESSEDDEM---MQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVL 866
            D  G +  LD +VK+A  EAF A D  FI  S  P+AGSTAT+ LILG RVY+ANVGDSRT++ R G++  AS+DHKP R DEEER+  AGGF+ H+RVMG LAVSRAFGD+EFK            G HG +    D        L+ +EPEF V ++T  + F+ LACDG+FDV ++ EVV  V  +M  HGDAQ+CCE +T  AI ER TRDNV+++L++L
Sbjct:  366 DVEGSFALLDGLVKQAFMEAFKATDDAFIKDSEHPQAGSTATTALILGGRVYVANVGDSRTIITREGRVLAASEDHKPQREDEEERIRNAGGFIVHKRVMGNLAVSRAFGDAEFK---------RGIGAHGPDADGLDSTSGGCAPLVISEPEFTVVQLTPAEDFMVLACDGLFDVFSNVEVVQAVCAEMAVHGDAQKCCESITLRAIRERHTRDNVTMILVML 580
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A7S4DCC2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCC2_HETAK)

HSP 1 Score: 204 bits (519), Expect = 5.640e-58
Identity = 112/215 (52.09%), Postives = 149/215 (69.30%), Query Frame = 3 
Query:  237 VVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFK-GKPANTESWAAPGQHGREESSEDDEMMQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNKWY 878
            VV EA+K A+   D  F+  S  P+AGSTA + L+LG ++Y+ NVGDSR +LCRNG+L  A+ DHKP R DEE R+  AGGFV H+RVMGELAVSRAFGDSEFK G   NT+          +++S +     LIT EPE L  ++T +D FI LACDG+FDV  +EE V+ V+++M  H +A R CE L+  A+ ER +RDN+++VLLVLN+W+
Sbjct:   31 VVHEAIKSAYRDCDAAFLRESEHPQAGSTAAAALVLGKKLYMINVGDSRALLCRNGQLFAATVDHKPFREDEEARIKAAGGFVVHKRVMGELAVSRAFGDSEFKRGLFTNTD----------KDTSNNGV---LITCEPEILEYDLTPEDHFILLACDGLFDVFENEEAVALVLQEMAGHRNAHRACEALSRRAL-ERGSRDNITVVLLVLNEWW 231
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A7S0XEJ1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.800e-55
Identity = 116/225 (51.56%), Postives = 148/225 (65.78%), Query Frame = 3 
Query:  216 PWEALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFK-GKPANTESWAAPGQHGREESSEDDEM---MQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNKWY 878
            P + LD VV  ++K+ F   D +FI  S   + GSTAT+ LILG R+Y ANVGDSR +LCRN K    +QDHKPSR DE +R+  AGGFV + RVMGELAVSRAFGDSEFK G     E   A   H   E  E D       LI A+P+   + I+  DQF+ LACDG+FDV T E++V+ V   M+ H D+QRCC++LT  AI +R +RDNVS++L++LN WY
Sbjct:  393 PIQLLDEVVIRSLKQTFLRTDNDFINKSTNSQHGSTATTALILGARLYAANVGDSRVILCRNFKAISMTQDHKPSREDECKRIRDAGGFVINNRVMGELAVSRAFGDSEFKKGIQGIVEQDLAT--HQLREGVEIDTTNWNQPLIVADPDIQATNISENDQFLLLACDGLFDVFTPEDIVTFVKSNMEEHHDSQRCCQNLTYEAIRKRNSRDNVSVILIILNPWY 615
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BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A7S2GBR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBR9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.390e-53
Identity = 112/220 (50.91%), Postives = 147/220 (66.82%), Query Frame = 3 
Query:  222 EALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKGKPANTESWAAPGQHGREESSED---DEMMQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNK 872
            EA D +V+  +KE+F   D++F+ TS   +AGSTAT+ L+LG R Y ANVGDSRTVLCRNG+    S DHKPSR DE  R+ KAGGF+ H+RVMGELAVSRAFGD++FK            G++    SS D   D    LI AEPE  V ++   D FI LACDG+FDVLT+++    V+++M THGD QR  E L+  AI E  +RDNV+++L++L +
Sbjct:  306 EARDTIVRAGLKESFLGIDRKFLETSE--QAGSTATTVLVLGNRAYCANVGDSRTVLCRNGEALPLSLDHKPSREDEAARIKKAGGFIIHKRVMGELAVSRAFGDADFKKGINEILGDNETGENKCGTSSSDQGGDFDAPLIVAEPEVKVIDLKEGDDFILLACDGLFDVLTNQQACDLVLQEMATHGDVQRTAETLSSRAIHEYGSRDNVTILLVLLRQ 523
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: W7U755_9STRA (Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U755_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.410e-52
Identity = 112/231 (48.48%), Postives = 150/231 (64.94%), Query Frame = 3 
Query:  222 EALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKG------KPANTESWAAPGQHGREESSEDDEMM------QLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNKWY 878
            + LD +VK  V EAF   D++F+  S + +AGSTAT+ LI+G RVY  NVGDSRT++CR+ KL L S DHKP+R DE  R+ +AGGF+   RVMGELAVSRAFGD E K        P   E  +      R+  S+ DE +       L+ A PE L++E++ +D F+ LACDG+FDV  + EV+  ++E MK H DAQR CE+++ TAI +R   DNVS+VLLV N W+
Sbjct:  779 QELDAIVKGVVLEAFDKTDQDFLGRSNV-DAGSTATTVLIMGRRVYSCNVGDSRTIICRDQKLLLCSNDHKPARVDEARRIRQAGGFIFQNRVMGELAVSRAFGDRELKKCMQEIMAPDELEQMSL-----RDARSDGDEALVKDYSQPLVIARPEILITELSERDDFVLLACDGLFDVFPNSEVIRFILEDMKQHHDAQRACENISYTAIHQRIAHDNVSIVLLVTNNWW 1003
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 191 bits (484), Expect = 9.520e-50
Identity = 106/217 (48.85%), Postives = 143/217 (65.90%), Query Frame = 3 
Query:  231 DVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKGKPANTESWAAP--GQHGREESSEDDEMMQ-LITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNK 872
            D +V  A+ E+F   DKEF+ T+   +AGSTAT+ L+LG R Y  NVGDSRTVLCR+G+    S DHKPSR DE  R+  AGGF+ H+RVMGELAVSRAFGD+EFK          AP  G  GR +++ D ++ + LI AEPE     +   D F+ LACDG+FDVLT++E    ++ +M  HGD QR  E L+  AI +  +RDNVS+++++L +
Sbjct:  300 DEIVIGALTESFIYTDKEFMRTAGHAQAGSTATTVLLLGDRAYCGNVGDSRTVLCRSGEAVPLSDDHKPSREDEAARIKAAGGFIIHKRVMGELAVSRAFGDAEFKKGINEILGDDAPTAGSGGRADNNPDTDLSKPLIIAEPEVQAVTLIPADDFLLLACDGLFDVLTNQEACDLILAEMARHGDVQRAAEALSRNAIDDCGSRDNVSILIVLLRQ 516
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 8.070e-47
Identity = 124/308 (40.26%), Postives = 156/308 (50.65%), Query Frame = 3 
Query:  225 ALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFK--------------------------------------GKPAN----TESWAAPGQH---GREESSED---------------------------------------------DEMMQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNKWY 878
            A+D V+++ V  AF A D+EF+ T+  P +GSTAT+ ++LG R Y  NVGDSRT+LCR G+  + S+DHKPSR DE ER+ +AGG V  RRVMGELAVSRAFGD  FK                                      G P N     E+ AA       GR  SS                                               D    LITAEPE L   IT +D+F+ LACDG+FDV TS+EVV  V ++++ HGD QR CE L   AI ER T+DNVS+VL+VLNK++
Sbjct:  942 AVDRVIEDVVTAAFLATDEEFLTTASKPSSGSTATTAMVLGDRFYGFNVGDSRTILCRAGRAEVVSKDHKPSREDETERIKRAGGMVIQRRVMGELAVSRAFGDRAFKVGIKAILREDGGHQHGSDLDDXXXXXXXXGLNHTAPATGSPTNGGEAAEALAADHNSRTMGRGSSSGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGVSRAKPVTDPTGALITAEPEMLSCRITPEDEFVLLACDGLFDVFTSDEVVRIVRKELRMHGDTQRVCETLVRRAINERYTQDNVSVVLVVLNKFW 1249
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A3R7KT20_9STRA (PPM-type phosphatase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KT20_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.910e-44
Identity = 94/227 (41.41%), Postives = 138/227 (60.79%), Query Frame = 3 
Query:  216 PWEALDVVVKEAVKEAFAAADKEFIATSRLPEAGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFKG------KPANTESWAAPGQHGREESSEDDEMMQ--LITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVLNK 872
            P E L  ++   + +AF   D EF+  S  P+AGSTAT+  + G  +++ANVGDSRTVL RNGK    S DHKPSR DE +R+ + GGFV H R+MGELAVSRAFGD+ FK          N +S        +E     +E+++  L+   PE  ++E+++ D+F+ LA DG++DVL  +E V  + +K+   GD QR  E + E AI  +R+ DNV+ V+++  +
Sbjct:   68 PMEELQSMITTRLIDAFERTDDEFLNESERPQAGSTATTVFVAGKYMFVANVGDSRTVLSRNGKAVRLSNDHKPSRQDEAQRIRETGGFVIHGRIMGELAVSRAFGDAPFKTFDLPEPPKENVDSKPRSEYDSQELPVNPNEILKGPLVIPTPEITITELSNDDEFVLLASDGLYDVLKDQEAVDFMRQKIAQLGDVQRAVEAIVEYAIFHQRSTDNVTAVVVMFKE 294
[Close]
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Match: A0A7S1XX31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX31_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.210e-44
Identity = 99/192 (51.56%), Postives = 130/192 (67.71%), Query Frame = 3 
Query:  312 AGSTATSCLILGPRVYIANVGDSRTVLCRNGKLRLASQDHKPSRADEEERVHKAGGFVAHRRVMGELAVSRAFGDSEFK-------GKPANTESWAAPGQHGREESSEDDEMMQLITAEPEFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCEDLTETAIVERRTRDNVSLVLLVL 866
            AGSTAT+ LIL  R+++ANVGDSRT+LCR G++   + DHKP RADE  R+  AGGFV H RV+GELAVSRAFGD+E+K       G+  +  S    G  G +  +E D    ++TAEPE    ++  +D+FI LACDG+FDV T+EEVV  V  +M  H DAQ+C E L+  AI ER  RDNV++VL++L
Sbjct:  558 AGSTATTILILRDRIWLANVGDSRTLLCRGGRVHAFTLDHKPDRADETARIKAAGGFVIHHRVLGELAVSRAFGDAEYKKGIQQYVGQD-DLNSLRQGGLMGGD--AEADYSRPILTAEPEIQSLKLAPEDEFIVLACDGLFDVFTNEEVVQAVRAEMAQHQDAQQCVESLSRRAIHERNCRDNVTIVLIIL 746
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2922.7970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP4_ECTSI2.400e-8073.54Putative serine/threonine phosphatase 2C ptc2 n=1 ... [more]
A0A836CBM8_9STRA1.070e-5952.23Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7S4DCC2_HETAK5.640e-5852.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0XEJ1_9STRA2.800e-5551.56Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2GBR9_9STRA6.390e-5350.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U755_9STRA1.410e-5248.48Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Mon... [more]
A0A7S2FV88_9STRA9.520e-5048.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5KIH1_9PHAE8.070e-4740.26PPM-type phosphatase domain-containing protein n=2... [more]
A0A3R7KT20_9STRA1.910e-4441.41PPM-type phosphatase domain-containing protein n=3... [more]
A0A7S1XX31_9STRA4.210e-4451.56Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2922contigH-paniculata_contig2922:321..8090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D7FNP4
KEGG koko:K01090,ko:K10706,ko:K14803
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009,ko03021
Exons6
Model size1927
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2922.7970.1prot_H-paniculata_contig2922.7970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2922 3482..7044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.2293437-UTR-H-paniculata_contig2922:320..6311622929894.2293437-UTR-H-paniculata_contig2922:320..631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 321..631 +
1691481058.8764286-UTR-H-paniculata_contig2922:320..6311691481058.8764286-UTR-H-paniculata_contig2922:320..631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 321..631 +
1622929894.2485647-UTR-H-paniculata_contig2922:2042..22281622929894.2485647-UTR-H-paniculata_contig2922:2042..2228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 2043..2228 +
1691481058.8952096-UTR-H-paniculata_contig2922:2042..22281691481058.8952096-UTR-H-paniculata_contig2922:2042..2228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 2043..2228 +
1622929894.2837443-UTR-H-paniculata_contig2922:3478..34811622929894.2837443-UTR-H-paniculata_contig2922:3478..3481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 3479..3481 +
1691481058.906768-UTR-H-paniculata_contig2922:3478..34811691481058.906768-UTR-H-paniculata_contig2922:3478..3481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 3479..3481 +
1622929894.377247-UTR-H-paniculata_contig2922:7044..80901622929894.377247-UTR-H-paniculata_contig2922:7044..8090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 7045..8090 +
1691481058.970645-UTR-H-paniculata_contig2922:7044..80901691481058.970645-UTR-H-paniculata_contig2922:7044..8090Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2922 7045..8090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929894.3045113-CDS-H-paniculata_contig2922:3481..35791622929894.3045113-CDS-H-paniculata_contig2922:3481..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 3482..3579 +
1691481058.923509-CDS-H-paniculata_contig2922:3481..35791691481058.923509-CDS-H-paniculata_contig2922:3481..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 3482..3579 +
1622929894.3212378-CDS-H-paniculata_contig2922:4081..41511622929894.3212378-CDS-H-paniculata_contig2922:4081..4151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 4082..4151 +
1691481058.9308305-CDS-H-paniculata_contig2922:4081..41511691481058.9308305-CDS-H-paniculata_contig2922:4081..4151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 4082..4151 +
1622929894.3381417-CDS-H-paniculata_contig2922:4991..51101622929894.3381417-CDS-H-paniculata_contig2922:4991..5110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 4992..5110 +
1691481058.9385016-CDS-H-paniculata_contig2922:4991..51101691481058.9385016-CDS-H-paniculata_contig2922:4991..5110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 4992..5110 +
1622929894.3569708-CDS-H-paniculata_contig2922:6950..70441622929894.3569708-CDS-H-paniculata_contig2922:6950..7044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 6951..7044 +
1691481058.954653-CDS-H-paniculata_contig2922:6950..70441691481058.954653-CDS-H-paniculata_contig2922:6950..7044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2922 6951..7044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2922.7970.1

>prot_H-paniculata_contig2922.7970.1 ID=prot_H-paniculata_contig2922.7970.1|Name=mRNA_H-paniculata_contig2922.7970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MGELAVSRAFGDSEFKGKPANTESWAAPGQHGREESSEDDEMMQLITAEP
EFLVSEITSQDQFIALACDGIFDVLTSEEVVSNVMEKMKTHGDAQRCCED
LTETAIVERRTRDNVSLVLLVLNKWY*
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mRNA from alignment at H-paniculata_contig2922:321..8090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2922.7970.1 ID=mRNA_H-paniculata_contig2922.7970.1|Name=mRNA_H-paniculata_contig2922.7970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7770bp|location=Sequence derived from alignment at H-paniculata_contig2922:321..8090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTACCGATTCGCTCGCGGCGAGATCGGGACGGTTGCTGGCCGCCGCC
GCGGCCGCCGAACAAGCAGGCGCTTGCGCAGGTCGAGTGAACCCGACCAG
GAGTCACAGCCTCCTCGCAAGAGCGGCGAGCCTGCGATTAAATCCATTCG
GGGGGGCCGGGGGAGGCGATGTTGTCAGCGGAGGCGGAGGTAGCAGCGGT
GGCGACGCGGGCGGACCATGGGAGGCGCTGGATGTGGTAGTTAAGGAGGC
AGTCAAGGAGGCGTTTGCGGCCGCGGACAAAGAGTTCATTGCGACCTCGA
GACTGCCTGAGGCAAGTGAGCGGCAGGGGGAACATTCATGGGAACGCTTG
CTGTTGTCACGCGGCCGTTGGCCTTGTGTCAGTGTAATCGCGTAGCGGAA
CTATGCCGAGTTTTTGCTGGTCAGGCTGGCGGGGCGAGGCGGGGCGGGGC
AGGGGAGAGATGCGGTGGTACACGTGACGACCAGCACAAACAATAGATGG
GTTGGAAGCGACGATTAACAATCAAGCATGTACTATAAAGTGCATTGTCG
ACGATGACATGGGGCAAAAGTGACGTTCGATACTTGACCGTGGAATGTTT
TAGACGTGTGTTATGTGTTATGTGCTATGTCAGCCAATCTTTGACAAGAA
CCCTACCTTCACCGCTCATAGGTGGTCAAATCAAATCAAAGGGGGTGTCA
TGAGAATGCGCCCCGTAATGAGAGGTCCCTGTTGGTTTAGCTCACCGTAC
TGTTACCTGACCGTTCCAGTTTACCATCCATAATTTTCTGAGAAACATCC
TGCCTCATCCCCTGACCAATCAAAACTCGTAACATGACGTCATCCACATG
TATGGTAAAATTTACCCTTCCCAGAGAGTAACGTCAAGCCCGTGGATGAC
GTCACCCGACAAACCAAGATTTTTCAGTCAATCAGATTTCTAGTTGAGGG
AAAAGCTGACCAATGAGACAACTGCCGGCACCTTCTGTAGTATTTGTTTG
TGTCAACTTACACGGCATATAGTGTGGTCTACTTGAGCATGTTTCAAATT
TATTCGTTTTGTTTACTTGTCGGCGTTGGTGGGTAAGGTGTGTCGGTCTG
AAACGCACCCAAACGATGTTTTGTCAAAGAAACAACCGTAGGGTCTCTCA
ACCATCTCGGGGTCAGAGAATTCCTCCCCAGTCCTCTTGTTACCATGATG
CAGTATAATATTGGGAAACGCCTACTTGCGTCTTGCCCCCCTCACACAAT
CTTATGTATTTTTCCCCTGTGTAGCGTAGAATTCGATATGTCGCTTTCAA
GACAGACGTTAGTCAACTCCTCGCTTGCAAACCCAGTCTCATCCCCCTCC
CGTCCTCATCTATTTTCGGCGTCTATTAATAGAATTGCTCAAGATAGTAT
AAGATAGCTTTTGAGACGTTCTGTGTTTGGTACATGAAATATAATACAAG
AGTTGTTGATGGTGAGGACGCGCAGATCTTTTTACAGGGCTTTACACGGG
ACGTTTTGTGTTCGTGTCTCGTGGTCTCGTGTATAAAGTCCTGCTTTTGT
CAACACAGGCAGGAAACCACACGAAACGAAGACGTGTGTGCCTGCTGTAC
AGCGATTTATCCCCTATACCCCATCTCACTCCCCTCCTTTCCGCCCCTCT
GCTCCTTCCACCGCACCGAACTGCCGTATCGCCTCGGTGGAAACCGAATA
TGTTTCACATAAAAAAAAGCAGGCGGGAAGTACAGCCACAAGCTGCCTCA
TACTAGGTCCTCGCGTGTATATAGCCAACGTGGGGGATAGCCGCACCGTG
CTGTGCAGGAACGGCAAGCTTCGGCTGGCTTCGCAAGATCACAAACCATC
TCGGGCAGACGAGGAGGAGCGCGTTCACAAGGCCGGGGGGTTCGTGGCAC
ATCGAAGGGTGAGGGGGAGAGATGGACAGGGGGGGAAAAACGCGATTGTG
GGAATCACGCGCTCAGCGCAGTGCAACGTCCGCGCGGCATTTGTGTTGCG
TTCGGGAGGGAGGGAGGGAGAGAGAGAGTACACGAGAAACTTCGTGACTT
ATCTTGACTCTCGTGTCAGACAGACATACAAAATATGTGTTGTTTTATCA
TCCTTTTTTTTTTTGGTTGTTGGCGTCTTTTTTTCTTTTTCTTGGAAAAT
GACCTGAATTCACTTGTCTATCGTGGTTTGTTGTTCAAAGATTGAATAAA
TTCTTGCAAGCACCATATATTTAGCAAATGGGTTTTTTCTTTTGGCGGAA
GGGGCGGGGCATACAAAGATGGCTTTCAAGTTGCCAGTTAGTAATGTCAG
GACTGGCTGACTGGCTGTTGACAGTAGCAAGAGACAGTGACTTTTTTCAT
TGCAAAGCTGCAGAGTAGTAAGATATTGGGTTGTTTCGAGAATGATCACC
ATTGGGACCAAAGCACCTGACTATGTAAACCTCGTAACAAGTGCCATGTT
TGGGAGTCGTGCACTTCAACACTAGACGGATTGGCAAGTTCTGCTCATTG
TTCACCATTTCCAACGAACAGGTGTGTAGACAGAGAGTCTTGGCAGTCGT
TTGCACTCTTGGAAAATGCATGTCAGCAATCCCACTGCCACCCTCAAGGT
GCACAAAACATCGACCGCCGTATTTTGTTTCCATTTTGCTGATGAGTGTT
CGCCACTTGGATTCCAGCTAGCCCGCACTACCTCAGCCATAATCCATTGC
GCGGGTCCGACAAAGGCTCGACTGTACTTGACACTATGGGAAAGTGTGAA
TGCGAGTTGATTTGGGAGTTAAGAGGAGTCACAGCTTTAGTGGGTGTGTA
TGTTGGGTGTTGATGTGTGGTTCATGACGTTCCTGTGCCTTCTAAATAGT
TTGTTGAGTTTGTGGATAATAACCAAGCAATCCAGCAAGTGTAAACTGCT
GAGCATACCTCGTTTTCTTTTACTCTCACTGTATCATTTTTACATCGCCG
TATATTTTATACCCCTTAGGGATTCATTTTTGCTGGTAGATGTATACAGG
TGCAGACTCAAGTTAGTCGCATAAGTTCAACATGGACACAATCGAGCTGT
ACTATGAGGTTCAGAGTTCAAGTTAAACTGACTGGCAGATTAATTTCACT
ACAATGATGAGAATATCTTTTCCCCCCTCCGCCGCCGCTGCCGTTGCCGA
TCTACCAGGTGATGGGCGAGTTGGCGGTGTCACGGGCGTTCGGAGACTCT
GAGTTCAAGGGAAAACCTGCGAACACCGAGTCGTGGGCTGCACCGGGTCA
GCACGGGAGGTAAGTGAGTGTCTTGTTCTCTCGTGTGTCTCGTTTCCGTC
GTGGGTTGGGACACGGTAGGTGTTGTCTCCCTGAGCTGATGGCTTGTGGG
CAGGTGGGCGTAGCCGTGTACAGTGTGCCTGCTTTGTGTAGTGCTTGCGT
TGCTGTGGACAAAAAAATTACGAAATGCTTTTTTATTTTTTTTTGTCGTA
TCACTGTTAGTGACGACAGGGGAGGCAGTGTCATCGTGCTTTTGTGCCAC
GTAAAAGGTGAGGCGAGCAACGAGCTATAAAATACATGCAGAGAGAGAGA
GAGAGAGAGGACCCTGCGCGTGCTCTTGGATGAGGGTATTCATTTCCCGT
TTTTTTTTTGTTTTTTTGCGTATATTACTATGCGTCTCTGTTGGTGTGTC
TTGTGTGTATGTGTGTTTTTTTCCCGCTTTTCGAGCTTGAACACCCTCTG
TGTTTGAGTTTTTCTTCCACTGTTTGGATTTGTCTTCGCTTCCCCCATTT
TTGGTTCCCAGAGAGGAATCGTCAGAAGACGACGAGATGATGCAGCTTAT
TACCGCAGAGCCAGAGTTTCTGGTGTCCGAGGTGAGCTACATGCCGTCAC
ATTATCAACTATCACAGCACTTCCTTGCGCCCTCGGCAGTGGTTATCGAT
AGGTTCTGGCATTGCCATGCGTCCTTTTGGGGGACGGCAAGAGGAAGGGT
GTTCGTTTTCTTCTGTAAAAGGAATACGTATGCATGTCGATCACAAAACG
GTTTCATACACCTGTAAGATATCGCTGTCCATTAATTTCCAGAGTTGATG
AATTTGCATGGATTCGCTCCAGAAGAAAACAGTACAAAGGTTGTTTTTTT
TCAAGTCTGGATGGTGATCCTCGTTTTTGTCCGGAATCGGGCTGTGTCTT
TCATTGCACGCGTTGGTGGTAAAAAAGTTTAGACTTTTGGTTCGTGCGCC
GTCAGGACCACTCATTTTGCACCGATAGATCAGATCAGATCGGACCATCC
ACGACTGCTAAGAATATTCGTAAATCGAATGGACAGGGGTTGGTACTTTA
TTATATGTCTTCGCGCATTCTTAAACTTGGGCGATTTTTTTTTTTTTCTT
GGCGAATACGCCAAGTATTCATGTTTCCCGGAGGTTGCACAGTTTTGATG
CGTACACGGTACCGATATTTATTGATCCGATGTGTGCATTCTTGTAACCA
TTTGAGGTTGTTTTGTGTTCAGTCTGTTCCTTAGCGCAGCTATCAAGTGC
ACACAACTTAGGTCGAGAGTATTATATGGGGATGGTCAGGTATTTAGCTC
CCTGAAATACAGTGACACTGGATTATCGAAAAATGTCGTAATCAAGTTGT
TTGATGATTGTTCTTGTGGACGGTTCGTTTTTTTGTTGCTGTCGGTGCCG
TGCTGATTCCGCTCTTTGCAGATAACGTCCCAAGACCAATTTATAGCGTT
GGCCTGTGACGGTATCTTTGACGTGCTGACGAGCGAGGAGGTTGTGAGCA
ACGTGATGGAGAAGATGAAGACACACGGGGATGCTCAGAGGTAAATGATG
GCTTACTTAGCCAGGATGACCTTGATTGAGGTGCTTGATTCGCCTTCACC
ATCGCTATTATACTATAGTTTATACAGGGAAAAAAAGGCTGACCACGCCT
AAAAAGTACCTTTTTTTATTCCCCGATGTTGACCCATTTTCGTTTATTGT
CTGCTGTTTGCTGGTGAAATAAATTCGTATAGCCATGAGTGCGAGCTGTT
AATACACGACTTCAGCAAGACATATGTCTACGTGTGCTTTATAAACATTG
GAGCAGTTTTTTAGGTTACCAGAAGTGTTACCTTTTTGAGCGGTTCTTGA
TACGAGCACGGGTGTATTTCGTCCCGTTCAATTTTTACAGCACAGAATAT
GTATGAACGCTACTCTATGTTACCCATCCACGCGAGTGAATACAGTTATA
TATTCCGTGTTAGATGTAGTAGTCAGGTACTGTCCACTGATGACTCTCCT
TCTCAAAGTTTGCGAGAGGATCGCGGCGCATCGTTCGTTTGCGGGGTGGA
TCGTAACCCATGTCATGCGATAGAAGCTGTCCGGTCAGGAACGTGGTCGT
GATGTGTTAGGCAGCACACGTCCGATTTCAAGCCAAATGCTTGAAGCACC
CGTATGTCACCCGTGAGATAGTTTCGTTGCTCTTTTTTTTCTTCGTGGAT
CAGTACTCGTATCGCAACCCCCGGTCCGAAGTTGGGGTTGTAATGGCCAA
GGTTTGTTGGATAGGGGTATTTCCATGAGGAAATTGAATTATTTTGGGGG
AGCTTGGCAGGTAAGAAATATTGAATATCTCGACAACTGTGATGAGTTGT
AACCTTATCCAAGGTGCATCGCAAAGATCACAACTCAAGCAATAATTGAC
TCTAAGCTAACGCCTCTCGACTCTCGGGTTTGATGGTGTCCTCCGAGAGT
GGCGATAAAATCGAAGCTGCGATGCTCATCATTGCTATTTGTATTGAATT
TAGTTTGCTGACTGTCGTCATGCGTGAACAAAACGGACATCGGCAGGGAT
GCGACAACTAGTGATTGGCACCCTAATAATGGGCTATTGGAATGGATTGG
ACTGAAGTAATAATTGCACCCACTAAAAGACCTCTGACTAGAGTTTCAGT
CATGCTCAGTTCACGAGCTACCCTACCCATTCGGGCGTAGGTCCATGGAA
GTAGGGCATACATGCTGTTTTCCCCATGACGGAGAGGATGCACCTGCCAA
AGGTAAGTACAGCAGGATTGGGTAAGGACACCAAACTACGCGGGGCTTTC
ACCTTTCGCTTCTGCTGTTCAGCACAAAGGAAAGTACACCTTGCAGTAAC
TGAGGCATCCTACACCATTTTGACCACCGCTAGCCCTCACCAGGAGCAAG
GGCGAGTGCGAAGAACACGTGGGATAATAGTTTTGGATAGACACAAAGGA
CAAAGAAGATTCAAATTTTCAGACGTCACAAGGCAGCGCCCTGGTTTATG
ATCGACGACACATTGGGTACATGGACGGTAAGGACTGTGGTGGGGCGGTC
CTTGTGAGTCCTTGTGTGAAATTGATGTTGTGAGTTCCTATGAGAAAGTC
TTCGAAAAGTGTGAATTTGGACCGATCATGATCGCCAATCCTTGTTCAAA
TCGATCCTATTCATGGTAGCGGTGCCATTTGATGAGATATGAGGACGAAT
AGTTATGGGTGATGACATGGTGATGAGACCTTGTGAAAGGAAGTAAGACG
AGAGCAAAAACTTGTTTAAAGACGGTAGTCTTATGTTCAGTTTGTTCTTC
TCTAACTTGCTCTTTTTTTCAATACAGTTTGTTTGTACACCTTATAACCC
CCCCCCCCCAACTCATGTAATGTCATGTAGGTGCTGCGAGGACCTAACGG
AGACGGCGATCGTGGAGCGGCGAACTCGAGACAACGTCAGTCTAGTCCTC
CTCGTGCTCAATAAATGGTACTGAGTCCTCCCTGCTGGAGGAATCGTCAA
GTATTATAATATTCATGATTCTAGATCAAGAAAGGATGGAGGGCTGCGGC
TGGGGAGCGTGAGGCTCAAGTGAACCCTCCTCACGGGGAGATGTTGTTAT
GTATGTTTTGAGTTTGGTGTGCGTGCAAGTTGGTTTTCGCGCGAGCGTGT
GTATGTTTATGTGTGTGTGTGTGTGTGATGAGAGAGAGAGAGAAAGGGGT
TTAGATACAAATATTTGGAAGGTAGATTGGTTTGCACTTTCGTATTACAG
TTTTATCCTAACTGGTACACACGTGGCGTTCTTGTGATAATACATACAAC
AAAATAACAACAATGTGGCAACTTTTTTAGTCACTGAAAACGCGATATTC
CCTCCTTTTCATGGCGAGATTCATCGATTCATGGCAGGAAACCATCTGAA
AGGGACCGGTGATATGCTTATCGGCGAATTAGGTGTAATGGGAGGCTAAG
ACAAAAAAAGGGCGGCATGTATAATTATGGGTATTGTAGAGCACCAAAGT
CGCTCGCTAGGCTGCAACGGTATTATTGGGGAGGAGAGGGCGAGGGCTCA
TGGCATTTTAGTTTATTTTCTTCCATGTTTTGGTAAATAAATAAACAAAT
AAGTGAGGGCATGGTTTTCCTTGTTCCCATGTGTGGTAGTTCGTGTTGTG
TTGTTGGATAACGCCTGGTTATCCTACCTGTAGGCTTGCTTTGACGCCGA
TGTTTTGTCGTGTCATTTGTACATCCATTCAAACATGGATCAATGTACCG
ATCCGCAGATTTTTCGAGGTCGCGGTCGATCTCGAGCAAAGGGAGTGTAA
GTGAGTTAGAGTTGTTTTGTGTGACTTGATGGACGATTTGGTCGTTATCC
GCCTGCTGGACCGTTAGACAAAGCCATTTTTCCTATTTCGCTCATTTTTT
CGCCAGTTTGAACTCCAGCGATCACTGCACTGAACCTGCGCACATTATGC
GCTGTTTTGCAAGTCTTCTCTTACTTGGAGTAAAGAACGAGTGAATCACA
TAGGCTGGGCGCACGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2922:321..8090+

>mRNA_H-paniculata_contig2922.7970.1 ID=mRNA_H-paniculata_contig2922.7970.1|Name=mRNA_H-paniculata_contig2922.7970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2922:321..8090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAGTTGGCGGTGTCACGGGCGTTCGGAGACTCTGAGTTCAAGGG
AAAACCTGCGAACACCGAGTCGTGGGCTGCACCGGGTCAGCACGGGAGAT
GGGCGAGTTGGCGGTGTCACGGGCGTTCGGAGACTCTGAGTTCAAGGGAA
AACCTGCGAACACCGAGTCGTGGGCTGCACCGGGTCAGCACGGGAGAGAG
GAATCGTCAGAAGACGACGAGATGATGCAGCTTATTACCGCAGAGCCAGA
GTTTCTGGTGTCCGAGAGAGGAATCGTCAGAAGACGACGAGATGATGCAG
CTTATTACCGCAGAGCCAGAGTTTCTGGTGTCCGAGATAACGTCCCAAGA
CCAATTTATAGCGTTGGCCTGTGACGGTATCTTTGACGTGCTGACGAGCG
AGGAGGTTGTGAGCAACGTGATGGAGAAGATGAAGACACACGGGGATGCT
CAGAGATAACGTCCCAAGACCAATTTATAGCGTTGGCCTGTGACGGTATC
TTTGACGTGCTGACGAGCGAGGAGGTTGTGAGCAACGTGATGGAGAAGAT
GAAGACACACGGGGATGCTCAGAGGTGCTGCGAGGACCTAACGGAGACGG
CGATCGTGGAGCGGCGAACTCGAGACAACGTCAGTCTAGTCCTCCTCGTG
CTCAATAAATGGTACTGAGTGCTGCGAGGACCTAACGGAGACGGCGATCG
TGGAGCGGCGAACTCGAGACAACGTCAGTCTAGTCCTCCTCGTGCTCAAT
AAATGGTACTGA
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