mRNA_H-paniculata_contig292.7963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig292.7963.1
Unique NamemRNA_H-paniculata_contig292.7963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D7G013_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G013_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 8.390e-41
Identity = 82/143 (57.34%), Postives = 110/143 (76.92%), Query Frame = 1
Query: 1264 MSGSGEAVRVLLEKE-AGLEATDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKLLQTQEPGVYRNRLDEILNMLAKAPADRVWRRRGWLVMMR 1689
            MSGSG AVR LL+++ + LEA D +G TA H+A+GHRLGS  TL A + +  N+EA T  GETPLH+AC+ALRV +V+ LL+FGA++ A D +GRTPAA+ ++LL +Q PG++R+ L  IL +L  AP DRVWRRRGWL+M+R
Sbjct:    1 MSGSGAAVRFLLDRDISSLEARDHDGRTALHLASGHRLGSDETLRALVESNGNIEARTFLGETPLHKACKALRVSAVEQLLRFGANDAAVDAEGRTPAAMTARLLLSQRPGMFRDMLQNILTLLEAAPGDRVWRRRGWLLMLR 143          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D7G014_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G014_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.710e-30
Identity = 153/330 (46.36%), Postives = 179/330 (54.24%), Query Frame = 1
Query:  328 TARSSLLRGMGERLLALVFESAPRDQLSNWLRVPLEHAAARGDFGCVE-------------KLVSAGADVCVRRRTMVVTDRSPLVAACQGGSEEVVSILLRNGAGPNGEFRQRQQHHQQCNTDGCXXXXXXXXXXXXXRSSTSSWESRTTGSGHDWGVRGGSSGGSVYDDSCSDDDSSTRWSPLHCAASGGHVAAVKALVSAGGELDAVDDENCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVRALLRA-------CPPGVINGNGGVHLLLSPLHRAALGGHSDVMRELLAHGASAATLSCGGRSILHA 1257
            ++ S+ LRG+GE LL +V+ESA  +QL +WLRVPLEHAAA       E             KL+ AGAD  VRR    V DRSPL+AA Q G+  VVS LL NG+ P+GE        + C                        WES    S       G      V D S S     T   PLH AASGGHV+ V+AL+ AG +LD  D +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       MV+A+LR        CP          HL + PLHRAALGGH +VM ELL  G+S  TL+   R+ LHA
Sbjct:   10 SSSSNPLRGLGEELLTIVWESASSEQLGSWLRVPLEHAAAXXXXXXPEHRCNDDSSPALCLKLLEAGADAFVRRGP--VLDRSPLLAAAQAGNAAVVSALLDNGSAPDGE-------EEDC------------------------WESSIFSSSSSAITVG------VVDASSSYGGQRT---PLHFAASGGHVSMVRALIGAGADLDTADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAHGSLGMVKAILRGSRESNLPCPTD--------HLEMPPLHRAALGGHCEVMSELLRQGSSLHTLAGNARTALHA 289          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.260e-22
Identity = 82/191 (42.93%), Postives = 106/191 (55.50%), Query Frame = 1
Query: 1144 SPLHRAALGGHSDVMRELLAHGASAA-TLSCGGRSILHACA-----MSGSGEAVRVLLEKEA--GLEATDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKLLQTQEPGVYRNRLDE-ILNMLAKAPADRVWRRRGWLVMMR 1689
            SPL  AA  GH+DV++ LL   +S   T +  G + LH  A     +   G+AVRVLL   A   ++ T+D   T  H+A    + S  T+ A L  GAN+ A T   +TPLH AC  LR   V+LLL++GADE   + DG TPA V   L Q       R   ++ I  MLA+APADR WRRRGWLV+ R
Sbjct:  247 SPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSR 437          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.120e-20
Identity = 79/192 (41.15%), Postives = 103/192 (53.65%), Query Frame = 1
Query: 1144 SPLHRAALGGHSDVMRELLAHGASAATLSCG-GRSILHACAM-----SGSGEAVRVLLEKEAGL-EATDDEGC-TATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKLLQTQEPGVYRNRLDE--ILNMLAKAPADRVWRRRGWLVMMR 1689
            SPL  AA GGH+DV++ LL   +S    + G G + LH  A+       +G+AVRVLL   A + E  +++ C T  HIA   R  S  T+ A L  G+N+ A     +TPLH AC+   V  V+LLL++GADE   +  G+TPA V     Q           D   I  ML  APADR WRRRGWLV+ R
Sbjct:   85 SPLEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSR 276          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.260e-18
Identity = 143/470 (30.43%), Postives = 190/470 (40.43%), Query Frame = 1
Query:  307 MDRSRNPTARSSLLRGMGERLLALVFESAPRDQLSNWLRVPLEHAAARGDFGCVEKLVSAGADVCVRRRTMVVTDRSPLVAACQGGSEEVVSILLRNGAGPNGEFRQRQQHHQQCNTDGCXXXXXXXXXXXXXRSSTSSWESRTTGSGHDWGVRGGSSGGSVYDDSCSDDDSSTRWSPLHCAASGGHVAAVKALVSAGGELDAVDDENCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVRALLRACPPGVINGNGGVHLLLSPLHRAALGGHSDVMRELLAHGASAATLSCGG--RSILHACAMSG----SGEAVRVLLEKEAGLEA--TDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKLLQTQ-EPGVYRNRLDEILNMLAKAPADRVWRRRGWLVMMR 1689
            M  S+      S L G    +  LV   A  +Q   WLR P EHAAA G+     +L+ AGA+     R      R+ L AA  G SE++V   L  GA                 TD                                  + GG     + D +  +     + SPLH AA  GH   V  L+     L+       TA  XXXXXXXXXXXX                               V+ LL A     +  NG      SPL  AA  G +DV++ LL   +     + GG   ++ +A ++ G    +G+AVRVLL   A + A  T D   T+ ++A   R+ S  T+ A L  GAN+ A     +TPLH AC       V+LLL++GAD+      G+TPA V   L Q   +          I  MLA+ PA R WRRRGWLV+ R
Sbjct:    1 MPGSKREEEDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGC--NGRTLLGAAAFGRSEKMVRTTLTAGA-----------------TDDVNV------------------------------LFGGEREALMIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLL-----LNRACVHAKTASQXXXXXXXXXXXXALCISELLLGANSHL--------------EAVQELLAAGANYSLRTNGS----RSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSR 398          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.110e-18
Identity = 139/529 (26.28%), Postives = 208/529 (39.32%), Query Frame = 1
Query:  334 RSSLLRGMGERLLALVFESAPRDQLSNWLRVPLEHAAARGDFGCVEKLVSAGADVCVRRRTMVVTDRSPLVAACQGGSEEVVSILLRNGAGPNGEFRQRQQHHQQCNTDGCXXXXXXXXXXXXXRSSTSSWESRTTGSGHDWGVRGGSSGGSVYD-----DSCSDDDSSTRWSPLHCAASGGHVAAVKALV-SAGGELDAVDDENCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVRALLRACPPGVINGNGGVHLLLSPLHRAALGGHSDVMRELLAHGASAATLSCGGRSILHACAMSGSGEAVRVLLEKEAGLEATDDEGCTATHIAAGHRLGSVATLD-------AFLLAGANMEATTNNGETPLHRACQALR--VDS-VKLLLQFGADEDARDGDGRTPAAVASKLLQ-------------TQEPGVYRNRLDEILN-------MLAKAPADRVWRRRGWLVMMRVQHQRRESCFAAIASASAAPPDGRRKQRRHAPKGVLVNLPR 1812
            + +LL G    +  L++  A  +Q + WLR PLEHAAARG+ G VE+L++AGA+     R      R+ L AA  GG+ +VV+ LL +G   +             +                  +  +  +           V G    G + D      +C +  + +  +PLH AA+ G+   V  L+ +A  ++DA+D    +                                            + V ALLRA     +   GG HL ++ +  A   GH  V+  ++ +G +       G + LH        +AV VLL+  A + A   + C A H   G    SV  +D       A L  G N+  T   G + LH  C +L   +D  V LLL++GA E A + +G TP+ +                   T+  G    R D +         +LA+APADR WRRR WLVM+R + +R             AP  G    R  A  G   NLPR
Sbjct:    6 KRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGC--RGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRH--GDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHC---------------------------------STVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHAR---GAQAVDVLLDAGADVNA---KACPALH---GFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAER----------GRGAPSSGSGSDRTEAATGR--NLPR 476          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.580e-17
Identity = 69/175 (39.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 1234 GGRSILHACAMS------GSGEAVRVLLEKEAGLEA--TDDEGC-TATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKLLQ------TQEPGVYRNRLDE--------ILNMLAKAPADRVWRRRGWLVMMR 1689
            GG + LH C          +G+ VRVLLE  A ++A  T D  C T  H A   R+  +  + A L  GAN+ A     +TPLH AC    V+ V+ LL +GADE   D DG TPA       +      T  PG  R + DE        I  MLA+APADR W RR WLV+ R
Sbjct:   18 GGYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGK-DEAIEADQHRIRQMLARAPADRSWHRRRWLVLSR 191          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.750e-17
Identity = 126/469 (26.87%), Postives = 168/469 (35.82%), Query Frame = 1
Query:  334 RSSLLRGMGERLLALVFESAPRDQLSNWLRVPLEHAAARGDFGCVEKLVSAGADVCVRRRTMVVTDRSPLVAACQGGSEEVVSILLRNGAGPNGEFRQRQQHHQQCNTDGCXXXXXXXXXXXXXRSSTSSWESRTTGSGHDWGVRGGSSGGSVYDDSCSDDDSSTRWSPLHCAASGGHVAAVKALVSAGGELDAVDD-ENCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVRALLRACPPGVINGNGGVHLLLSPLHRAALGGHSDVMRELLAHGASAATLSC--GGRSILHACAMSGSGEAVRVLLEKEAGLEATDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRAC----QALRVDSVKLLLQFGADEDARDGDGRTP--------AAVASKLLQTQEPGVYRNRLDEILNMLAKAPADRVWRRRGWLVMMRVQ 1695
            + +LL G    +  L+   A  +Q ++WLR PLEHAAARG+ G VE+L+ AGAD   R        R+ L AA              +G  P+                                                          SV          S++ S LH A   GH AA + L+ AG  +  VD  + C                                              +V  LL      +   +  +H   SPL  A+  GH   +  LL  GA   TL C  GG S + A  M+G GE V V              G    H +A H  G   T+ A L    N +   N G + LH AC          +V LLL++GA E A D  G TP        AAVAS  +  +     +  +   L +LA+APADR WRRR WLVM+R +
Sbjct:    6 KRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADG--RAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVV------------------------------------------------------SV----------SSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLH---SPLMLASANGHRSTVEALLRAGADT-TLRCYSGGVSDMAALEMAG-GEVVDVXXXXXXXXXXXXAGGSIPLHASAVH--GHDETMVALLKREGNFDEQDNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRAR 401          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-16
Identity = 67/184 (36.41%), Postives = 94/184 (51.09%), Query Frame = 1
Query: 1171 GHSDVMRELLAHGASAATLSC--GGRSILHACAMSGSGEAVRVLLEK--EAGLEATDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALR---VDSVKLLLQFGADEDARDGDGRTPAAVASKLLQTQEPGVYRNRLDEILNMLAKAPADRVWRRRGWLVMMRVQHQ 1701
            GH  V++  L HG  A++ +C   G + LH  A+    EAV VLLE   +A +E+     C  T + A     S   L   L  GA+     +NG  PLH A        ++ V LLL++GA E A +  G TPA V  +L     P     R   ++ +LA+APADR WRRRGW+VM+R + +
Sbjct:  178 GHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLA-IHRPDATEERAGALV-LLARAPADRAWRRRGWVVMLRARSE 359          
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.150e-15
Identity = 59/144 (40.97%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 1276 GEAVRVLLEK--EAGLEATDDEGCTATHIAAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQFGADEDARDGDGRTPAAVASKL----LQTQEPGVYRNRLDEILNMLAKAPADRVWRRRGWLVMMR 1689
            G+AVRVLL    +  +  T D   T  H+A   R+ S  T+ A LL GA++++   + +TPLH AC+   V  V+LLL++GADE   +  G  PA V        L  +E      R   I  ML +APADR WRRRGWLV+ R
Sbjct:   60 GDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVDGRIASDGTIRA-LLEGADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQR---ICRMLTRAPADRSWRRRGWLVLSR 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig292.7963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G013_ECTSI8.390e-4157.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G014_ECTSI2.710e-3046.36Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LQN0_ECTSI3.260e-2242.93Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LQI9_ECTSI1.120e-2041.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE8.260e-1830.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE9.110e-1826.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K9_9PHAE1.580e-1739.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI2.750e-1726.87Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7FSI6_ECTSI1.270e-1636.41Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JXF0_9PHAE1.150e-1540.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig292contigH-paniculata_contig292:7546..10707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue9.6e-37
Seed eggNOG ortholog2880.D7G013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeat
EggNOG OGs2EV9T@1,2SXAG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2012
Cds size1704
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig292.7963.1prot_H-paniculata_contig292.7963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig292 7546..9249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.7227004-CDS-H-paniculata_contig292:7545..92491622929892.7227004-CDS-H-paniculata_contig292:7545..9249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig292 7546..9249 -
1691481058.042012-CDS-H-paniculata_contig292:7545..92491691481058.042012-CDS-H-paniculata_contig292:7545..9249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig292 7546..9249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.7361455-UTR-H-paniculata_contig292:9249..93251622929892.7361455-UTR-H-paniculata_contig292:9249..9325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig292 9250..9325 -
1691481058.0516043-UTR-H-paniculata_contig292:9249..93251691481058.0516043-UTR-H-paniculata_contig292:9249..9325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig292 9250..9325 -
1622929892.7524178-UTR-H-paniculata_contig292:10477..107071622929892.7524178-UTR-H-paniculata_contig292:10477..10707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig292 10478..10707 -
1691481058.0613692-UTR-H-paniculata_contig292:10477..107071691481058.0613692-UTR-H-paniculata_contig292:10477..10707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig292 10478..10707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig292.7963.1

>prot_H-paniculata_contig292.7963.1 ID=prot_H-paniculata_contig292.7963.1|Name=mRNA_H-paniculata_contig292.7963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=568bp
MDRSRNPTARSSLLRGMGERLLALVFESAPRDQLSNWLRVPLEHAAARGD
FGCVEKLVSAGADVCVRRRTMVVTDRSPLVAACQGGSEEVVSILLRNGAG
PNGEFRQRQQHHQQCNTDGCSTCCCSERSNSNSRSSTSSWESRTTGSGHD
WGVRGGSSGGSVYDDSCSDDDSSTRWSPLHCAASGGHVAAVKALVSAGGE
LDAVDDENCTALHLAVFRGHEGVVDVLVAAGAKIDTHDNEGETPLHTAAG
SGNLNMVRALLRACPPGVINGNGGVHLLLSPLHRAALGGHSDVMRELLAH
GASAATLSCGGRSILHACAMSGSGEAVRVLLEKEAGLEATDDEGCTATHI
AAGHRLGSVATLDAFLLAGANMEATTNNGETPLHRACQALRVDSVKLLLQ
FGADEDARDGDGRTPAAVASKLLQTQEPGVYRNRLDEILNMLAKAPADRV
WRRRGWLVMMRVQHQRRESCFAAIASASAAPPDGRRKQRRHAPKGVLVNL
PRFLGHGSHGQAEEEQSEQAQVPTRFAPAQLEHDKFKNHGRPGGTHVQQQ
QQQQRVATVERGGVMGEW
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mRNA from alignment at H-paniculata_contig292:7546..10707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig292.7963.1 ID=mRNA_H-paniculata_contig292.7963.1|Name=mRNA_H-paniculata_contig292.7963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3162bp|location=Sequence derived from alignment at H-paniculata_contig292:7546..10707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACGCACGGGAGGCCCCACGAGCACATCACTTGACAAACAACGGAG GTACAAACTCTTGGGTCATGGTAGGTTAGAGCATTCTTCTCCTCTTGGTC CTGTTGGATGATGGCAGGTTAGACTACCCTCTCCTCCTACCGTATCATCA CCACCACCACCACCACCGCCGTGGCCGCCGCCAGCGACTTCACACGGAAT CGTCTCTGCGCGTTGCTGCTTTGACCGGATGTGAGTTTGTCCGTGGGTCA TGTGCTGTTAGCAGGTATCTTAGCCTGTGGGGCTGGTACATATTATGCAT AGTAAAAGAGTATGCTGTGTCACTCACATTACCCAGCCACAATTTTGCTA TCCCGTCATGGGTTCAGTGTCGCTTTTGGGTCAGCGAGCGTTGTGCCTGT GTGGAAAAACTATATCCTGAAGCTCCAGCGTTGTTCCCAGGTTGTGGCCT TTGGCAAGAACCTGTTCTCTAAGCAGCTTGACCTCGAACAAACAGCTGGG AGATCGTCATCATGAGTATAGAAAAGCTCGATTCTTCACCAGCGGACCCG AGCAGCTACTGACTTAACTGTCGGTAGAACAGTTTACTGTACATCACTAT CATTTATATACAACACTTTTTCGTCTGTCTGTTGAGGAGTCGAGTTCTTA CTAAAAAATGGCTGCTGATTTGGGAGTTTTTCAACCACACCACTTGACGG CGTCTCCTCACCGACCAACCTCCTTGGCGTACCACTTCCATCCCCAAATG CAAAAAATGGATGGAAAAGTAAGTTAGAACACGCCTAACTGTTTTACTCC AGAAGGTACGCATCTATCCTTGGCAAGGTGTGTGGAGGGCTGCGGCCCAC CCAGCAAATCAGTCAACCTGCTGCTTAGCCATATATTCGGTGCTATTAGT GCATTGTCTGCAGTTTGGTTTTCGTGCAGCAGTTTCCTTTGTTCCTGTTT CGCAGTTGCCTGCAGTTCAGTCCCGAGCCGCGCCTGCCTGCAGTTCAATC CCGAGCCGCGCCTGCCTGCAGTTCAATCCCGAGCCGCGCGGGGCGATGCT CAACGTGATTGGCCAACGCGCAGCGATTGTTCTCACCACAACAAGGAGGT AGAGCTTGTTGGGCAAAAGCGCCCAGCACTCAACACCCGTTGGCAGAGCG ACATGTCGAAATGTTCGAACACCGCCAAGGAAGATTTGGAAAAAGTACTG TGCATACCTGTTTACATAGATACCGAGGGCACCCAAATCAACTGATGTAC TAGAATATCACGTAGGGTCGGTCCAACAGGCACAGCGCTGACCTACACAA CCTAACGCACTCCCTATTTCTCATGACCAGCTGCTTGCACTTTCCTTTTC TGCACTGATTATTCGTAATCTGTATCGCACAGTGCCGAGAAGACCGCACA TTGATCTCTAGCAACACCCCAAGACGCGGGGCTTGAGCAAGCCAACAGCT GCGCTAGTATGGACCGCAGTCGAAACCCAACAGCACGGTCCAGCTTGTTG CGTGGCATGGGCGAGCGCCTGCTAGCCCTTGTCTTTGAATCCGCCCCCCG AGATCAATTGAGCAATTGGCTGAGGGTCCCTCTGGAGCATGCTGCTGCAA GGGGCGACTTCGGTTGCGTGGAGAAGCTGGTGTCGGCGGGTGCGGACGTG TGCGTGAGAAGACGGACCATGGTTGTCACCGATAGGTCGCCTCTCGTCGC CGCATGTCAGGGTGGAAGTGAAGAAGTGGTGTCCATTTTGCTCAGGAACG GCGCGGGACCGAATGGAGAATTTCGGCAGCGGCAGCAGCATCATCAGCAG TGCAACACTGACGGTTGCTCGACCTGTTGTTGCAGCGAGCGCAGCAACAG CAACAGCAGATCAAGTACAAGTAGCTGGGAGTCGAGGACCACAGGCAGCG GTCACGACTGGGGTGTTCGGGGCGGTAGCTCCGGTGGCTCGGTTTACGAC GACAGTTGCAGCGACGACGACTCCAGTACACGGTGGTCGCCGCTACACTG CGCTGCCTCCGGCGGGCACGTCGCCGCCGTAAAAGCCCTGGTCTCGGCAG GAGGGGAGCTTGATGCCGTGGATGACGAAAACTGTACAGCGCTCCATCTT GCCGTGTTCCGCGGACACGAGGGCGTCGTAGACGTACTTGTGGCTGCCGG GGCGAAAATAGACACGCACGACAACGAGGGGGAAACCCCATTGCATACCG CCGCTGGGAGCGGCAACCTTAACATGGTCAGGGCGTTGCTAAGGGCTTGC CCCCCGGGGGTCATCAATGGAAACGGCGGGGTGCACCTGTTGCTGTCGCC GTTGCACAGAGCCGCCCTCGGCGGGCACAGTGATGTAATGCGCGAGTTGC TTGCTCACGGGGCGTCCGCGGCAACTCTCTCATGCGGCGGGCGGAGCATA CTCCACGCCTGCGCGATGTCGGGCAGCGGTGAAGCAGTCCGCGTTCTGCT CGAAAAAGAGGCTGGGCTTGAGGCTACGGACGACGAGGGTTGCACGGCTA CGCACATCGCTGCGGGACATAGGCTCGGGTCTGTGGCCACTCTTGATGCC TTCCTCCTGGCGGGTGCCAATATGGAGGCCACGACGAACAATGGGGAGAC ACCGCTGCACCGCGCCTGTCAGGCACTCCGCGTGGACTCCGTGAAGCTTC TCCTGCAATTCGGGGCGGATGAGGACGCTAGGGACGGCGACGGCCGCACG CCAGCAGCGGTGGCCTCTAAGCTGCTCCAAACACAAGAGCCCGGCGTGTA CCGTAACAGGCTAGACGAGATACTGAACATGCTCGCGAAGGCCCCCGCGG ATCGTGTCTGGCGCAGGCGGGGTTGGTTAGTGATGATGCGGGTGCAGCAT CAGCGGCGGGAGTCTTGCTTCGCGGCGATCGCGTCTGCGTCTGCGGCGCC TCCTGACGGCAGGCGCAAGCAACGGCGGCACGCGCCCAAAGGCGTTCTGG TCAACTTGCCTCGATTTTTGGGACACGGTTCTCATGGGCAAGCGGAGGAG GAGCAGTCGGAGCAGGCCCAGGTCCCCACTAGGTTTGCGCCTGCGCAGCT GGAGCACGATAAGTTCAAGAATCACGGCCGCCCCGGTGGCACCCATGTGC AGCAGCAGCAGCAGCAGCAGCGCGTGGCGACAGTGGAAAGAGGTGGAGTG ATGGGAGAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig292:7546..10707-

>mRNA_H-paniculata_contig292.7963.1 ID=mRNA_H-paniculata_contig292.7963.1|Name=mRNA_H-paniculata_contig292.7963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at H-paniculata_contig292:7546..10707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGCAGTCGAAACCCAACAGCACGGTCCAGCTTGTTGCGTGGCAT
GGGCGAGCGCCTGCTAGCCCTTGTCTTTGAATCCGCCCCCCGAGATCAAT
TGAGCAATTGGCTGAGGGTCCCTCTGGAGCATGCTGCTGCAAGGGGCGAC
TTCGGTTGCGTGGAGAAGCTGGTGTCGGCGGGTGCGGACGTGTGCGTGAG
AAGACGGACCATGGTTGTCACCGATAGGTCGCCTCTCGTCGCCGCATGTC
AGGGTGGAAGTGAAGAAGTGGTGTCCATTTTGCTCAGGAACGGCGCGGGA
CCGAATGGAGAATTTCGGCAGCGGCAGCAGCATCATCAGCAGTGCAACAC
TGACGGTTGCTCGACCTGTTGTTGCAGCGAGCGCAGCAACAGCAACAGCA
GATCAAGTACAAGTAGCTGGGAGTCGAGGACCACAGGCAGCGGTCACGAC
TGGGGTGTTCGGGGCGGTAGCTCCGGTGGCTCGGTTTACGACGACAGTTG
CAGCGACGACGACTCCAGTACACGGTGGTCGCCGCTACACTGCGCTGCCT
CCGGCGGGCACGTCGCCGCCGTAAAAGCCCTGGTCTCGGCAGGAGGGGAG
CTTGATGCCGTGGATGACGAAAACTGTACAGCGCTCCATCTTGCCGTGTT
CCGCGGACACGAGGGCGTCGTAGACGTACTTGTGGCTGCCGGGGCGAAAA
TAGACACGCACGACAACGAGGGGGAAACCCCATTGCATACCGCCGCTGGG
AGCGGCAACCTTAACATGGTCAGGGCGTTGCTAAGGGCTTGCCCCCCGGG
GGTCATCAATGGAAACGGCGGGGTGCACCTGTTGCTGTCGCCGTTGCACA
GAGCCGCCCTCGGCGGGCACAGTGATGTAATGCGCGAGTTGCTTGCTCAC
GGGGCGTCCGCGGCAACTCTCTCATGCGGCGGGCGGAGCATACTCCACGC
CTGCGCGATGTCGGGCAGCGGTGAAGCAGTCCGCGTTCTGCTCGAAAAAG
AGGCTGGGCTTGAGGCTACGGACGACGAGGGTTGCACGGCTACGCACATC
GCTGCGGGACATAGGCTCGGGTCTGTGGCCACTCTTGATGCCTTCCTCCT
GGCGGGTGCCAATATGGAGGCCACGACGAACAATGGGGAGACACCGCTGC
ACCGCGCCTGTCAGGCACTCCGCGTGGACTCCGTGAAGCTTCTCCTGCAA
TTCGGGGCGGATGAGGACGCTAGGGACGGCGACGGCCGCACGCCAGCAGC
GGTGGCCTCTAAGCTGCTCCAAACACAAGAGCCCGGCGTGTACCGTAACA
GGCTAGACGAGATACTGAACATGCTCGCGAAGGCCCCCGCGGATCGTGTC
TGGCGCAGGCGGGGTTGGTTAGTGATGATGCGGGTGCAGCATCAGCGGCG
GGAGTCTTGCTTCGCGGCGATCGCGTCTGCGTCTGCGGCGCCTCCTGACG
GCAGGCGCAAGCAACGGCGGCACGCGCCCAAAGGCGTTCTGGTCAACTTG
CCTCGATTTTTGGGACACGGTTCTCATGGGCAAGCGGAGGAGGAGCAGTC
GGAGCAGGCCCAGGTCCCCACTAGGTTTGCGCCTGCGCAGCTGGAGCACG
ATAAGTTCAAGAATCACGGCCGCCCCGGTGGCACCCATGTGCAGCAGCAG
CAGCAGCAGCAGCGCGTGGCGACAGTGGAAAGAGGTGGAGTGATGGGAGA
GTGGATGGACCGCAGTCGAAACCCAACAGCACGGTCCAGCTTGTTGCGTG
GCATGGGCGAGCGCCTGCTAGCCCTTGTCTTTGAATCCGCCCCCCGAGAT
CAATTGAGCAATTGGCTGAGGGTCCCTCTGGAGCATGCTGCTGCAAGGGG
CGACTTCGGTTGCGTGGAGAAGCTGGTGTCGGCGGGTGCGGACGTGTGCG
TGAGAAGACGGACCATGGTTGTCACCGATAGGTCGCCTCTCGTCGCCGCA
TGTCAGGGTGGAAGTGAAGAAGTGGTGTCCATTTTGCTCAGGAACGGCGC
GGGACCGAATGGAGAATTTCGGCAGCGGCAGCAGCATCATCAGCAGTGCA
ACACTGACGGTTGCTCGACCTGTTGTTGCAGCGAGCGCAGCAACAGCAAC
AGCAGATCAAGTACAAGTAGCTGGGAGTCGAGGACCACAGGCAGCGGTCA
CGACTGGGGTGTTCGGGGCGGTAGCTCCGGTGGCTCGGTTTACGACGACA
GTTGCAGCGACGACGACTCCAGTACACGGTGGTCGCCGCTACACTGCGCT
GCCTCCGGCGGGCACGTCGCCGCCGTAAAAGCCCTGGTCTCGGCAGGAGG
GGAGCTTGATGCCGTGGATGACGAAAACTGTACAGCGCTCCATCTTGCCG
TGTTCCGCGGACACGAGGGCGTCGTAGACGTACTTGTGGCTGCCGGGGCG
AAAATAGACACGCACGACAACGAGGGGGAAACCCCATTGCATACCGCCGC
TGGGAGCGGCAACCTTAACATGGTCAGGGCGTTGCTAAGGGCTTGCCCCC
CGGGGGTCATCAATGGAAACGGCGGGGTGCACCTGTTGCTGTCGCCGTTG
CACAGAGCCGCCCTCGGCGGGCACAGTGATGTAATGCGCGAGTTGCTTGC
TCACGGGGCGTCCGCGGCAACTCTCTCATGCGGCGGGCGGAGCATACTCC
ACGCCTGCGCGATGTCGGGCAGCGGTGAAGCAGTCCGCGTTCTGCTCGAA
AAAGAGGCTGGGCTTGAGGCTACGGACGACGAGGGTTGCACGGCTACGCA
CATCGCTGCGGGACATAGGCTCGGGTCTGTGGCCACTCTTGATGCCTTCC
TCCTGGCGGGTGCCAATATGGAGGCCACGACGAACAATGGGGAGACACCG
CTGCACCGCGCCTGTCAGGCACTCCGCGTGGACTCCGTGAAGCTTCTCCT
GCAATTCGGGGCGGATGAGGACGCTAGGGACGGCGACGGCCGCACGCCAG
CAGCGGTGGCCTCTAAGCTGCTCCAAACACAAGAGCCCGGCGTGTACCGT
AACAGGCTAGACGAGATACTGAACATGCTCGCGAAGGCCCCCGCGGATCG
TGTCTGGCGCAGGCGGGGTTGGTTAGTGATGATGCGGGTGCAGCATCAGC
GGCGGGAGTCTTGCTTCGCGGCGATCGCGTCTGCGTCTGCGGCGCCTCCT
GACGGCAGGCGCAAGCAACGGCGGCACGCGCCCAAAGGCGTTCTGGTCAA
CTTGCCTCGATTTTTGGGACACGGTTCTCATGGGCAAGCGGAGGAGGAGC
AGTCGGAGCAGGCCCAGGTCCCCACTAGGTTTGCGCCTGCGCAGCTGGAG
CACGATAAGTTCAAGAATCACGGCCGCCCCGGTGGCACCCATGTGCAGCA
GCAGCAGCAGCAGCAGCGCGTGGCGACAGTGGAAAGAGGTGGAGTGATGG
GAGAGTGG
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