mRNA_H-paniculata_contig29188.7961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.640e-35 Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L+VFRGDFDSDSELDTTIKGMAGESMSYPL+YGYSLVGRV++CG GVD +KF+GKLVFAFSPH + V ADAD VM+VP
Sbjct: 719 LKVFRGDFDSDSELDTTIKGMAGESMSYPLKYGYSLVGRVSKCGGGVDPDKFLGKLVFAFSPHSARVVADADGVMLVP 796
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A6H5LPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPZ8_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.810e-25 Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 58 GMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
GMAGESMSYPL+YGYSLVGRVA CG GVD +KF+GKLVFAFSPH +WV ADAD VM+VP
Sbjct: 372 GMAGESMSYPLKYGYSLVGRVARCGGGVDPDKFLGKLVFAFSPHSTWVVADADGVMLVP 430
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A1E7FW20_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW20_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.490e-21 Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L++F+G FD D+ LD IK M E MSYPL YGY LVG V +CG V EK+MGK VF FSPH + + D DA IVP
Sbjct: 114 LKIFKGKFDDDAALDINIKNMEDERMSYPLSYGYCLVGVVVDCGSEVLREKYMGKTVFTFSPHATHIITDVDATQIVP 191
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A835YW36_9STRA (ADH_zinc_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW36_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.930e-21 Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 LQVFRGDFDSDSE--LDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVD-LEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
++VF+GDF+ D+E LDTTI GMA M YPLRYGYSLVGRV CG V+ +G+L+FAF+PH S DA +VM VP
Sbjct: 1 MKVFKGDFEDDAEQQLDTTIAGMADNKMQYPLRYGYSLVGRVVACGEEVEGSAALLGQLMFAFAPHASMAAVDASSVMPVP 81
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A6U3SUV6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SUV6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 7.670e-20 Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 LQVFRGDFDSDSE--LDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L++FRG FD+DS+ LD IKGM +MSYPL YGYSLVGRV +CG V D + G+LVF FSPH S + AD +++ +VP
Sbjct: 922 LKIFRGTFDNDSDAALDINIKGMDDSTMSYPLTYGYSLVGRVVKCGSAVPDADSLHGRLVFTFSPHSSRIIADRESLHVVP 1002
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: B8BXG1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXG1_THAPS) HSP 1 Score: 89.7 bits (221), Expect = 2.210e-19 Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L++F+G F+S S LD IKGMA ESM YPL YGYSLVGRV CG V D + +GKLVF FS H S V D DA +VP
Sbjct: 106 LKIFKGSFESAS-LDVNIKGMADESMEYPLAYGYSLVGRVVACGVDVEDADSLIGKLVFTFSAHSSRVIIDRDACQLVP 183
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A7S2Y827_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y827_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18 Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L+VF+G F+ D LD I M GE M+YPL YGYSLVG V ECG V D E +GKLVFAF+PH S V D A+ +VP
Sbjct: 202 LKVFKGLFE-DVALDVNIPSMEGERMTYPLTYGYSLVGHVVECGAAVADKENLIGKLVFAFAPHASQVVVDQSALQVVP 279
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A7S2Y7W5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7W5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.710e-18 Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L+VF+G F+ D LD I M GE M+YPL YGYSLVG V ECG V D E +GKLVFAF+PH S V D A+ +VP
Sbjct: 553 LKVFKGLFE-DVALDVNIPSMEGERMTYPLTYGYSLVGHVVECGAAVADKENLIGKLVFAFAPHASQVVVDQSALQVVP 630
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: L1IRP4_GUITC (ADH_zinc_N domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IRP4_GUITC) HSP 1 Score: 85.5 bits (210), Expect = 1.110e-17 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
L++FRG+F+ D++LDTTI+ M + M+YPL YGYSLVGRV G GV ++ GK +F+FSPH S A+ M+VP
Sbjct: 608 LKIFRGEFEEDAQLDTTIEDMKEQRMAYPLSYGYSLVGRVI--GSGVSAREWEGKRLFSFSPHSSHAIVSANGAMLVP 683
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: K8Z583_NANGC (Zinc-binding dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z583_NANGC) HSP 1 Score: 84.0 bits (206), Expect = 2.400e-17 Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 1 LQVFRGDF---DSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGK---------LVFAFSPHCSWVTADADAVMIVP 234
L+V+RG+ + E+D IKGMAGE+++YPLRYGY+LVGRV CG V D E+ MG+ LVFAFSPH S A ++++VP
Sbjct: 22 LKVYRGEIPQGEEAGEVDVNIKGMAGETLAYPLRYGYALVGRVVRCGADVADRERLMGREGGGEGAAPLVFAFSPHASRAVVAASSLLVVP 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29188.7961.1 >prot_H-paniculata_contig29188.7961.1 ID=prot_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEback to top mRNA from alignment at H-paniculata_contig29188:1255..2422- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29188.7961.1 ID=mRNA_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-paniculata_contig29188:1255..2422- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29188:1255..2422- >mRNA_H-paniculata_contig29188.7961.1 ID=mRNA_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig29188:1255..2422- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |