mRNA_H-paniculata_contig29188.7961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29188.7961.1
Unique NamemRNA_H-paniculata_contig29188.7961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.640e-35
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L+VFRGDFDSDSELDTTIKGMAGESMSYPL+YGYSLVGRV++CG GVD +KF+GKLVFAFSPH + V ADAD VM+VP
Sbjct:  719 LKVFRGDFDSDSELDTTIKGMAGESMSYPLKYGYSLVGRVSKCGGGVDPDKFLGKLVFAFSPHSARVVADADGVMLVP 796          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A6H5LPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPZ8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.810e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1
Query:   58 GMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            GMAGESMSYPL+YGYSLVGRVA CG GVD +KF+GKLVFAFSPH +WV ADAD VM+VP
Sbjct:  372 GMAGESMSYPLKYGYSLVGRVARCGGGVDPDKFLGKLVFAFSPHSTWVVADADGVMLVP 430          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A1E7FW20_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW20_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.490e-21
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L++F+G FD D+ LD  IK M  E MSYPL YGY LVG V +CG  V  EK+MGK VF FSPH + +  D DA  IVP
Sbjct:  114 LKIFKGKFDDDAALDINIKNMEDERMSYPLSYGYCLVGVVVDCGSEVLREKYMGKTVFTFSPHATHIITDVDATQIVP 191          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A835YW36_9STRA (ADH_zinc_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW36_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.930e-21
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 LQVFRGDFDSDSE--LDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVD-LEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            ++VF+GDF+ D+E  LDTTI GMA   M YPLRYGYSLVGRV  CG  V+     +G+L+FAF+PH S    DA +VM VP
Sbjct:    1 MKVFKGDFEDDAEQQLDTTIAGMADNKMQYPLRYGYSLVGRVVACGEEVEGSAALLGQLMFAFAPHASMAAVDASSVMPVP 81          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A6U3SUV6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SUV6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.670e-20
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 LQVFRGDFDSDSE--LDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L++FRG FD+DS+  LD  IKGM   +MSYPL YGYSLVGRV +CG  V D +   G+LVF FSPH S + AD +++ +VP
Sbjct:  922 LKIFRGTFDNDSDAALDINIKGMDDSTMSYPLTYGYSLVGRVVKCGSAVPDADSLHGRLVFTFSPHSSRIIADRESLHVVP 1002          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: B8BXG1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXG1_THAPS)

HSP 1 Score: 89.7 bits (221), Expect = 2.210e-19
Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L++F+G F+S S LD  IKGMA ESM YPL YGYSLVGRV  CG  V D +  +GKLVF FS H S V  D DA  +VP
Sbjct:  106 LKIFKGSFESAS-LDVNIKGMADESMEYPLAYGYSLVGRVVACGVDVEDADSLIGKLVFTFSAHSSRVIIDRDACQLVP 183          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A7S2Y827_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y827_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L+VF+G F+ D  LD  I  M GE M+YPL YGYSLVG V ECG  V D E  +GKLVFAF+PH S V  D  A+ +VP
Sbjct:  202 LKVFKGLFE-DVALDVNIPSMEGERMTYPLTYGYSLVGHVVECGAAVADKENLIGKLVFAFAPHASQVVVDQSALQVVP 279          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: A0A7S2Y7W5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7W5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.710e-18
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L+VF+G F+ D  LD  I  M GE M+YPL YGYSLVG V ECG  V D E  +GKLVFAF+PH S V  D  A+ +VP
Sbjct:  553 LKVFKGLFE-DVALDVNIPSMEGERMTYPLTYGYSLVGHVVECGAAVADKENLIGKLVFAFAPHASQVVVDQSALQVVP 630          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: L1IRP4_GUITC (ADH_zinc_N domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IRP4_GUITC)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-17
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLEKFMGKLVFAFSPHCSWVTADADAVMIVP 234
            L++FRG+F+ D++LDTTI+ M  + M+YPL YGYSLVGRV   G GV   ++ GK +F+FSPH S     A+  M+VP
Sbjct:  608 LKIFRGEFEEDAQLDTTIEDMKEQRMAYPLSYGYSLVGRVI--GSGVSAREWEGKRLFSFSPHSSHAIVSANGAMLVP 683          
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Match: K8Z583_NANGC (Zinc-binding dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z583_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 2.400e-17
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 LQVFRGDF---DSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGV-DLEKFMGK---------LVFAFSPHCSWVTADADAVMIVP 234
            L+V+RG+    +   E+D  IKGMAGE+++YPLRYGY+LVGRV  CG  V D E+ MG+         LVFAFSPH S     A ++++VP
Sbjct:   22 LKVYRGEIPQGEEAGEVDVNIKGMAGETLAYPLRYGYALVGRVVRCGADVADRERLMGREGGGEGAAPLVFAFSPHASRAVVAASSLLVVP 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29188.7961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW7_ECTSI1.640e-3582.05ADH_zinc_N domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LPZ8_9PHAE2.810e-2581.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7FW20_9STRA2.490e-2156.41Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A835YW36_9STRA6.930e-2156.79ADH_zinc_N domain-containing protein n=1 Tax=Tribo... [more]
A0A6U3SUV6_9STRA7.670e-2055.56Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8BXG1_THAPS2.210e-1959.49Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2Y827_9STRA1.540e-1856.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2Y7W5_9STRA1.710e-1856.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
L1IRP4_GUITC1.110e-1751.28ADH_zinc_N domain-containing protein n=2 Tax=Guill... [more]
K8Z583_NANGC2.400e-1748.35Zinc-binding dehydrogenase n=1 Tax=Nannochloropsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29188contigH-paniculata_contig29188:1255..2422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.9e-30
Seed eggNOG ortholog2880.D7FVW7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGs2REAB@2759,COG1063@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.4475381-CDS-H-paniculata_contig29188:1254..14311622929892.4475381-CDS-H-paniculata_contig29188:1254..1431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29188 1255..1431 -
1691481057.9288166-CDS-H-paniculata_contig29188:1254..14311691481057.9288166-CDS-H-paniculata_contig29188:1254..1431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29188 1255..1431 -
1622929892.4623036-CDS-H-paniculata_contig29188:2365..24221622929892.4623036-CDS-H-paniculata_contig29188:2365..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29188 2366..2422 -
1691481057.9378357-CDS-H-paniculata_contig29188:2365..24221691481057.9378357-CDS-H-paniculata_contig29188:2365..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29188 2366..2422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29188.7961.1prot_H-paniculata_contig29188.7961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29188 1255..2422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29188.7961.1

>prot_H-paniculata_contig29188.7961.1 ID=prot_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
LQVFRGDFDSDSELDTTIKGMAGESMSYPLRYGYSLVGRVAECGPGVDLE
KFMGKLVFAFSPHCSWVTADADAVMIVP
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mRNA from alignment at H-paniculata_contig29188:1255..2422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29188.7961.1 ID=mRNA_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-paniculata_contig29188:1255..2422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGTGTTCCGAGGAGACTTTGACTCCGACTCGGAACTAGACACGAC GATCAAGGTCAGTGGCAGTTTTTTTGTTTATTTTTTTTCAAAGCGAAAAG AAGAAGTGATTTATTTCTAAAGGAGCATACGTGGCATCGGCCATTTCACG TCTAGTGAAGACATTGGGTTTGTAGCTGCACCTGCGTCAAGTATTTTGTC TAGACCGGTTTCCACAAGAAGTTATCCACTAATATATATTTGTGGCAACA ACTCCAAAGAACAACACTCTATTGTTTTCGTTTTTTACGTTGGCTTTTGA TACTCGATAGGGCTGTTCGTTCCCTGTGGAACACAAAAAAACCCTGCTCA AGACGAAACCGAGGCTCACGTTAGCTCTATAGGGTATTCCTTGGTCCTGT ATTGAGAAAGTAATGACTCATGAAGAAAACACCAAATGATCCTGTTATCA AGAAAATACGGTGTTGAAAACAAAAAATTCTTCACTTACATCACGTCACC TGTATCTAATGACACATTTCGACGAGACCTTTCCAGCTTGAAGGAAACAA CACTTGGTGCCACTTTGCTTTGAGAGCACCCTAGTTTCCGAGAAAAATCG AACTTAAAGAACAATATCACACCGCGGGACGGGGGGGGGGGGTGTAAAAA GGTGTGATGAAATCTGGAGTACGACCAACACGGTGCGTTGTATTTGGCGT AGGGCTAGAGTGAGGGCCAGGGACAGCGAAGCCTTGTCTTCTTTTTTTTT AAGTTCTGCTCTGTTGATGTTCTTTGCATTTGTTGTCATGCCATTTTTCG AAACGAAAACATTGGTGAGTCAAGTCGTTTCTTGAGGCTACATTACGTAA CCCCGGGGATTGGGGATGGAACCGTCACTTTAGACAATGACTGTCACGTC CCGCAATCAACATCTCAAAGTTTAGGCTAGGATGTCTCTAGCGTGCATCG TCATCGATTATCGCGCGATTGGTTCATTTGGCTTGTTGCAGGGAATGGCG GGGGAAAGCATGTCGTACCCTCTCAGGTACGGGTACAGCCTGGTGGGCAG GGTGGCGGAGTGCGGCCCTGGGGTAGACCTAGAGAAGTTTATGGGAAAGC TCGTGTTCGCGTTCAGCCCGCACTGCTCGTGGGTCACGGCCGACGCCGAC GCGGTTATGATTGTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig29188:1255..2422-

>mRNA_H-paniculata_contig29188.7961.1 ID=mRNA_H-paniculata_contig29188.7961.1|Name=mRNA_H-paniculata_contig29188.7961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig29188:1255..2422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGTGTTCCGAGGAGACTTTGACTCCGACTCGGAACTAGACACGAC
GATCAAGTTGCAGGTGTTCCGAGGAGACTTTGACTCCGACTCGGAACTAG
ACACGACGATCAAGGGAATGGCGGGGGAAAGCATGTCGTACCCTCTCAGG
TACGGGTACAGCCTGGTGGGCAGGGTGGCGGAGTGCGGCCCTGGGGTAGA
CCTAGAGAAGTTTATGGGAAAGCTCGTGTTCGCGTTCAGCCCGCACTGCT
CGTGGGTCACGGCCGACGCCGACGCGGTTATGATTGTTCCGGGAATGGCG
GGGGAAAGCATGTCGTACCCTCTCAGGTACGGGTACAGCCTGGTGGGCAG
GGTGGCGGAGTGCGGCCCTGGGGTAGACCTAGAGAAGTTTATGGGAAAGC
TCGTGTTCGCGTTCAGCCCGCACTGCTCGTGGGTCACGGCCGACGCCGAC
GCGGTTATGATTGTTCCG
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