mRNA_H-paniculata_contig29178.7957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29178.7957.1
Unique NamemRNA_H-paniculata_contig29178.7957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.960e-28
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVLK 219
            +PS QE L EFWSLWGYMANTVIFF+TG TAAT+AFG DS+I  RDWG+L+ L++  H++RG VI  SYPVLK
Sbjct:  322 SPSVQESLREFWSLWGYMANTVIFFLTGFTAATRAFGSDSTIQARDWGYLVLLWVACHIVRGFVICASYPVLK 394          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.270e-27
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   13 QEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVLK 219
            +E L EFWSLWGYMANTVIFF+TGLTAATKAFG DS+I  RDWG+L+ L++  H++RG VI  SYPVLK
Sbjct:  232 RESLREFWSLWGYMANTVIFFLTGLTAATKAFGSDSTIQARDWGYLVLLWVACHIVRGFVICASYPVLK 300          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A7S0CWA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CWA1_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 6.560e-15
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    7 STQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVL 216
            ++ E LH FW + GY+ NT+IFFV+GL  A + F    +I+G D+G+L+ LY+ +H+IR + I++ YP+L
Sbjct:   93 ASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLFSGSENINGNDFGWLILLYVFLHIIRTTSIALLYPIL 162          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A7S0CTX3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTX3_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 6.590e-15
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    7 STQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVL 216
            ++ E LH FW + GY+ NT+IFFV+GL  A + F    +I+G D+G+L+ LY+ +H+IR + I++ YP+L
Sbjct:  322 ASHETLHSFWEVLGYLINTLIFFVSGLLVAIRLFSGSENINGNDFGWLILLYVFLHIIRTTSIALLYPIL 391          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A1Y1IAW3_KLENI (Na+/H+ antiporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAW3_KLENI)

HSP 1 Score: 72.0 bits (175), Expect = 5.190e-13
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVLK 219
            T   ++ LH FW +  YMANT+IF ++G+  A        SID RDW +L+ LYL V + R  V+ +SYP+LK
Sbjct:  176 TGEHKKSLHHFWEMVAYMANTLIFILSGVIIAEVILRNTESIDARDWVYLIVLYLFVQLARVVVVGLSYPLLK 248          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A2K1IMX4_PHYPA (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IMX4_PHYPA)

HSP 1 Score: 72.0 bits (175), Expect = 5.200e-13
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVLK 219
            T  + + +H FW +  Y+ANT++F ++G+  A         I GRDWG+LL LYL V + R  V+ + YP LK
Sbjct:  313 TGESAQSMHHFWEMISYIANTLVFLLSGVVIAESILRSQDKIQGRDWGYLLLLYLFVQISRAMVVGLLYPGLK 385          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A0U9HQR6_KLENI (Na+/H+ antiporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQR6_KLENI)

HSP 1 Score: 71.2 bits (173), Expect = 9.710e-13
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVL 216
            T   ++ LH FW +  YMANT+IF ++G+  A       +SI+GRDWG+L+ LY+ V + R  V+   YP+L
Sbjct:  291 TGENKKSLHYFWEMVAYMANTLIFILSGVIIAEAILRSTASIEGRDWGYLILLYVFVQLARAVVVGACYPLL 362          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A7S3YKQ0_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YKQ0_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 4.580e-12
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   13 QEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSID-GRDWGFLLALYLVVHVIRG-SVISMSYPVLK 219
            +E +H FW + G++ANT+IFF++G+    + F  + +I  GRD+ FL  LY+++HVIRG +V+ + YP+ K
Sbjct:  341 EETVHHFWEMVGFIANTLIFFISGVVVVQRMFADNPNIQLGRDFLFLFILYVLIHVIRGFTVLVLGYPLAK 411          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: A0A7S3YKM8_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YKM8_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 4.620e-12
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   13 QEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSID-GRDWGFLLALYLVVHVIRG-SVISMSYPVLK 219
            +E +H FW + G++ANT+IFF++G+    + F  + +I  GRD+ FL  LY+++HVIRG +V+ + YP+ K
Sbjct:  341 EETVHHFWEMVGFIANTLIFFISGVVVVQRMFADNPNIQLGRDFLFLFILYVLIHVIRGFTVLVLGYPLAK 411          
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 8.510e-12
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFLLALYLVVHVIRGSVISMSYPVL 216
            +P  +  +H FWS+  Y+ANTVIFFV+GL    +A   D+ + GR+WG L  LY+++ ++R  V+ +  PVL
Sbjct:  218 SPGVEHSMHTFWSMATYVANTVIFFVSGLIIGDQAIFNDT-LGGREWGLLALLYVLLQLVRSVVVLLLLPVL 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29178.7957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0H9_9PHAE1.960e-2868.49Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7G372_ECTSI3.270e-2771.01Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A7S0CWA1_9EUKA6.560e-1544.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0CTX3_9EUKA6.590e-1544.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1Y1IAW3_KLENI5.190e-1343.84Na+/H+ antiporter n=1 Tax=Klebsormidium nitens Tax... [more]
A0A2K1IMX4_PHYPA5.200e-1339.73Cyclic nucleotide-binding domain-containing protei... [more]
A0A0U9HQR6_KLENI9.710e-1341.67Na+/H+ antiporter n=1 Tax=Klebsormidium nitens Tax... [more]
A0A7S3YKQ0_9EUKA4.580e-1242.25Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S3YKM8_9EUKA4.620e-1242.25Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
D8LKR2_ECTSI8.510e-1241.67Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29178contigH-paniculata_contig29178:318..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog2880.D7G372
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929892.0644124-CDS-H-paniculata_contig29178:317..5391622929892.0644124-CDS-H-paniculata_contig29178:317..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29178 318..539 -
1691481057.7857556-CDS-H-paniculata_contig29178:317..5391691481057.7857556-CDS-H-paniculata_contig29178:317..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29178 318..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29178.7957.1prot_H-paniculata_contig29178.7957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29178 318..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29178.7957.1

>prot_H-paniculata_contig29178.7957.1 ID=prot_H-paniculata_contig29178.7957.1|Name=mRNA_H-paniculata_contig29178.7957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
TPSTQEPLHEFWSLWGYMANTVIFFVTGLTAATKAFGKDSSIDGRDWGFL
LALYLVVHVIRGSVISMSYPVLK*
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mRNA from alignment at H-paniculata_contig29178:318..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29178.7957.1 ID=mRNA_H-paniculata_contig29178.7957.1|Name=mRNA_H-paniculata_contig29178.7957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig29178:318..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCTTCCACACAGGAGCCCCTTCACGAGTTCTGGTCGTTATGGGGGTA CATGGCCAACACAGTAATCTTTTTCGTAACTGGGCTGACGGCGGCGACCA AGGCTTTCGGGAAGGATAGCTCTATCGACGGGCGCGATTGGGGGTTTCTC CTGGCGCTCTACCTGGTGGTGCACGTGATCCGTGGCTCTGTGATCTCCAT GTCCTACCCTGTGCTCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig29178:318..539-

>mRNA_H-paniculata_contig29178.7957.1 ID=mRNA_H-paniculata_contig29178.7957.1|Name=mRNA_H-paniculata_contig29178.7957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig29178:318..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCTTCCACACAGGAGCCCCTTCACGAGTTCTGGTCGTTATGGGGGTA
CATGGCCAACACAGTAATCTTTTTCGTAACTGGGCTGACGGCGGCGACCA
AGGCTTTCGGGAAGGATAGCTCTATCGACGGGCGCGATTGGGGGTTTCTC
CTGGCGCTCTACCTGGTGGTGCACGTGATCCGTGGCTCTGTGATCTCCAT
GTCCTACCCTGTGCTCAAGTAAACGCCTTCCACACAGGAGCCCCTTCACG
AGTTCTGGTCGTTATGGGGGTACATGGCCAACACAGTAATCTTTTTCGTA
ACTGGGCTGACGGCGGCGACCAAGGCTTTCGGGAAGGATAGCTCTATCGA
CGGGCGCGATTGGGGGTTTCTCCTGGCGCTCTACCTGGTGGTGCACGTGA
TCCGTGGCTCTGTGATCTCCATGTCCTACCCTGTGCTCAAGTAA
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