mRNA_H-paniculata_contig2916.7954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2916.7954.1
Unique NamemRNA_H-paniculata_contig2916.7954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2916.7954.1 vs. uniprot
Match: A0A6H5KA38_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA38_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.080e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 2 
Query:   17 IPRQTVGALKNAVLACIGSMVVLGTLFLLARFFIKLDDMVWAVRWIAYFMPIR 175
            I    V  LKNA+LAC  S+VVLG LFL A FFIK  DM+W +RW+ YF+P R
Sbjct:  246 IMLMVVETLKNAMLACTFSIVVLGALFLFAGFFIKPSDMIWPIRWVTYFIPTR 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2916.7954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA38_9PHAE7.080e-1158.49ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2916contigH-paniculata_contig2916:4854..5502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size178
Cds size105
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2916.7954.1prot_H-paniculata_contig2916.7954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2916 4927..5502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.8040395-UTR-H-paniculata_contig2916:4853..49261622929891.8040395-UTR-H-paniculata_contig2916:4853..4926Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2916 4854..4926 +
1691481057.6507773-UTR-H-paniculata_contig2916:4853..49261691481057.6507773-UTR-H-paniculata_contig2916:4853..4926Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2916 4854..4926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.8183217-CDS-H-paniculata_contig2916:4926..49741622929891.8183217-CDS-H-paniculata_contig2916:4926..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2916 4927..4974 +
1691481057.661175-CDS-H-paniculata_contig2916:4926..49741691481057.661175-CDS-H-paniculata_contig2916:4926..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2916 4927..4974 +
1622929891.8380666-CDS-H-paniculata_contig2916:5445..55021622929891.8380666-CDS-H-paniculata_contig2916:5445..5502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2916 5446..5502 +
1691481057.670607-CDS-H-paniculata_contig2916:5445..55021691481057.670607-CDS-H-paniculata_contig2916:5445..5502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2916 5446..5502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2916.7954.1

>prot_H-paniculata_contig2916.7954.1 ID=prot_H-paniculata_contig2916.7954.1|Name=mRNA_H-paniculata_contig2916.7954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MVVLGTLFLLARFFIKLDDMVWAVRWIAYFMPIR*
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mRNA from alignment at H-paniculata_contig2916:4854..5502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2916.7954.1 ID=mRNA_H-paniculata_contig2916.7954.1|Name=mRNA_H-paniculata_contig2916.7954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=649bp|location=Sequence derived from alignment at H-paniculata_contig2916:4854..5502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGAACTATGACTGATCCCACGTCAGACGGTCGGAGCCCTTAAGAACG
CGGTGCTCGCTTGCATCGGCAGCATGGTGGTTCTCGGCACGCTCTTTCTG
CTCGCGAGGTTCTTCATCAAGGTGACCTTCGCTGCAGACAGCTGTGAACC
CTTGAACATTTGGTACCACTTCCCCAATGTTTTTATCTCGAAGTTACGGC
ACCAAACTAACAATACCTTGTACATAGACGCCAACTGTTGCAGCGAAAGG
GAGTAACGTAGTTGACACCGGCTTTTGGCATATTAACGAGGGCAATAAAA
ACAGCATACAACCCGAAAACATTTAGTGTGCATCAGCGAACATGCGATAA
TGGGTGTGAAACGTTTTGACGACGGCAACCACCTTCATATCTGTGGGCAG
GCATCACCGCCAGGCATCGTCGTCAGACGTGAGCAAATTTTCTTCTCGCT
CAACTCCTACCTGACCAACGTTCATCTGACAAAGTAGATGTTGACTACCT
GCGACCTACCGCCATACCTTCTTCCCCGTCTGCGTGCTGTTGTGTATCTC
TCCCATGTGTTTCGCCGAACAAAACGTCTCCTTCGAAATCAGCTTGATGA
TATGGTGTGGGCTGTTCGGTGGATAGCCTATTTTATGCCCATCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2916:4854..5502+

>mRNA_H-paniculata_contig2916.7954.1 ID=mRNA_H-paniculata_contig2916.7954.1|Name=mRNA_H-paniculata_contig2916.7954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig2916:4854..5502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTTCTCGGCACGCTCTTTCTGCTCGCGAGGTTCTTCATCAAGAT
GGTGGTTCTCGGCACGCTCTTTCTGCTCGCGAGGTTCTTCATCAAGCTTG
ATGATATGGTGTGGGCTGTTCGGTGGATAGCCTATTTTATGCCCATCAGG
TGACTTGATGATATGGTGTGGGCTGTTCGGTGGATAGCCTATTTTATGCC
CATCAGGTGA
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