mRNA_H-paniculata_contig29157.7953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29157.7953.1
Unique NamemRNA_H-paniculata_contig29157.7953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29157.7953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29157contigH-paniculata_contig29157:1525..1761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.7452989-CDS-H-paniculata_contig29157:1524..17581622929891.7452989-CDS-H-paniculata_contig29157:1524..1758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29157 1525..1758 -
1691481057.629979-CDS-H-paniculata_contig29157:1524..17581691481057.629979-CDS-H-paniculata_contig29157:1524..1758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29157 1525..1758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.762307-UTR-H-paniculata_contig29157:1758..17611622929891.762307-UTR-H-paniculata_contig29157:1758..1761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29157 1759..1761 -
1691481057.6409533-UTR-H-paniculata_contig29157:1758..17611691481057.6409533-UTR-H-paniculata_contig29157:1758..1761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29157 1759..1761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29157.7953.1prot_H-paniculata_contig29157.7953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29157 1525..1758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29157.7953.1

>prot_H-paniculata_contig29157.7953.1 ID=prot_H-paniculata_contig29157.7953.1|Name=mRNA_H-paniculata_contig29157.7953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MRGQTRFIDNSAWTGFGGGIYLSSGQWMIVELATFVLNKAFWGGAVATFS
SGGQLNPLDYGGCIFTNNSASEDGGGLY
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mRNA from alignment at H-paniculata_contig29157:1525..1761-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29157.7953.1 ID=mRNA_H-paniculata_contig29157.7953.1|Name=mRNA_H-paniculata_contig29157.7953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig29157:1525..1761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTATGCGAGGCCAGACTCGTTTTATAGATAATAGCGCTTGGACCGGCTT
CGGCGGGGGAATTTACTTGTCCAGCGGACAATGGATGATCGTCGAGCTCG
CCACGTTCGTCTTGAACAAAGCTTTTTGGGGAGGGGCTGTAGCCACGTTT
TCTTCTGGCGGGCAACTGAACCCGCTCGACTACGGTGGGTGTATTTTCAC
GAACAATTCGGCATCAGAAGATGGCGGAGGGCTTTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig29157:1525..1761-

>mRNA_H-paniculata_contig29157.7953.1 ID=mRNA_H-paniculata_contig29157.7953.1|Name=mRNA_H-paniculata_contig29157.7953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig29157:1525..1761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGGCCAGACTCGTTTTATAGATAATAGCGCTTGGACCGGCTTCGG
CGGGGGAATTTACTTGTCCAGCGGACAATGGATGATCGTCGAGCTCGCCA
CGTTCGTCTTGAACAAAGCTTTTTGGGGAGGGGCTGTAGCCACGTTTTCT
TCTGGCGGGCAACTGAACCCGCTCGACTACGGTGGGTGTATTTTCACGAA
CAATTCGGCATCAGAAGATGGCGGAGGGCTTTATATGCGAGGCCAGACTC
GTTTTATAGATAATAGCGCTTGGACCGGCTTCGGCGGGGGAATTTACTTG
TCCAGCGGACAATGGATGATCGTCGAGCTCGCCACGTTCGTCTTGAACAA
AGCTTTTTGGGGAGGGGCTGTAGCCACGTTTTCTTCTGGCGGGCAACTGA
ACCCGCTCGACTACGGTGGGTGTATTTTCACGAACAATTCGGCATCAGAA
GATGGCGGAGGGCTTTAT
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