mRNA_H-paniculata_contig29155.7952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29155.7952.1
Unique NamemRNA_H-paniculata_contig29155.7952.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29155.7952.1 vs. uniprot
Match: A0A6H5KU96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU96_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.900e-25
Identity = 74/159 (46.54%), Postives = 82/159 (51.57%), Query Frame = 1 
Query:    7 QILGAFEANAFSEHDLRLARERWAASSGNTTNXXXXXXXXNTNTPVKR----------------------KRAQVCAMDVVGDGVEGGDETGAKRAERDRDGSKDKATRYFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLIIAASLKSQIGLANDSPVS 417
            + LGAFEAN+FSEHDLRLARE+WAA  G           X                              K A+        DG EG  ETG                 YFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLI+AASLK+++  A DSP S
Sbjct:  104 KTLGAFEANSFSEHDLRLAREKWAADGGGCGGCGLSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAEAAPAPAARDGAEGETETGGPV--------------YFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLILAASLKNKVANAKDSPNS 248
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BLAST of mRNA_H-paniculata_contig29155.7952.1 vs. uniprot
Match: D7G2N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 7.140e-23
Identity = 78/146 (53.42%), Postives = 87/146 (59.59%), Query Frame = 1 
Query:    7 QILGAFEANAFSEHDLRLARERWAASSGNTTNXXXXXXXXNTNTPVKRKRAQVCAMDVVGDG--------VEGGDETGAKRAERDRDG-SKDKATRYFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLIIAASLKSQIGLANDSPVS 417
            +ILGAFEANAFSEHDLRLARE+WAA       XXXXXXXX                                G     A  A    +G S++    YFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLI+AASLK+++  A DSP S
Sbjct:  386 KILGAFEANAFSEHDLRLAREKWAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGAAPAPAPAAREVAEGESEEGGPVYFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLILAASLKNKVANAKDSPNS 531
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BLAST of mRNA_H-paniculata_contig29155.7952.1 vs. uniprot
Match: A0A7S2W205_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W205_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.440e-6
Identity = 52/145 (35.86%), Postives = 64/145 (44.14%), Query Frame = 1 
Query:   10 ILGAFEANAFSEHDLRLARERWAASSGNTTNXXXXXXXXNTNTPVK-RKRAQVCAMDVVGDGVEGGDET--GAKRAERDRD------------GSKDKATRYFGLKYLTSSRLLRLQLRDPTLRLQVLTQWLIIAASLKSQIGLA 399
            +L AFE  AF EH+L   R  +A+               N + P   R  A   AM    D +     T  G +    D D            G     + YFG KYLT+SRLLRLQL DP LRLQV TQ  ++ A LK+Q   A
Sbjct:  316 VLRAFEFYAFHEHELEQGRLGYASRR-------------NASLPEHLRGTAPKLAMAPATDALSSDPSTPGGGEPKSMDLDTTPVSARKGASGGGTSDTSPYFGCKYLTTSRLLRLQLVDPQLRLQVTTQLWVLFAHLKAQAPAA 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29155.7952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KU96_9PHAE1.900e-2546.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2N9_ECTSI7.140e-2353.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W205_9STRA4.440e-635.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29155contigH-paniculata_contig29155:941..2240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7G2N9
KEGG koko:K12878
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0000160,GO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009892,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031503,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035556,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071369,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097659,GO:0098542,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699
EggNOG free text desc.negative regulation of isotype switching to IgA isotypes
EggNOG OGsKOG2491@1,KOG2491@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929891.6995237-CDS-H-paniculata_contig29155:940..10151622929891.6995237-CDS-H-paniculata_contig29155:940..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29155 941..1015 -
1691481057.6094077-CDS-H-paniculata_contig29155:940..10151691481057.6094077-CDS-H-paniculata_contig29155:940..1015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29155 941..1015 -
1622929891.7136183-CDS-H-paniculata_contig29155:1898..22401622929891.7136183-CDS-H-paniculata_contig29155:1898..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29155 1899..2240 -
1691481057.6209056-CDS-H-paniculata_contig29155:1898..22401691481057.6209056-CDS-H-paniculata_contig29155:1898..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29155 1899..2240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29155.7952.1prot_H-paniculata_contig29155.7952.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29155 941..2240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29155.7952.1

>prot_H-paniculata_contig29155.7952.1 ID=prot_H-paniculata_contig29155.7952.1|Name=mRNA_H-paniculata_contig29155.7952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MRQILGAFEANAFSEHDLRLARERWAASSGNTTNTTNNNNNANTNTPVKR
KRAQVCAMDVVGDGVEGGDETGAKRAERDRDGSKDKATRYFGLKYLTSSR
LLRLQLRDPTLRLQVLTQWLIIAASLKSQIGLANDSPVS
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mRNA from alignment at H-paniculata_contig29155:941..2240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29155.7952.1 ID=mRNA_H-paniculata_contig29155.7952.1|Name=mRNA_H-paniculata_contig29155.7952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-paniculata_contig29155:941..2240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAGATTTTAGGCGCTTTCGAGGCCAACGCCTTCTCCGAGCATGA
TCTGCGTTTGGCCAGGGAGCGGTGGGCTGCATCAAGTGGTAACACCACCA
ACACCACGAACAACAACAATAATGCCAACACCAATACCCCGGTCAAACGA
AAGCGGGCCCAAGTGTGCGCGATGGACGTGGTGGGGGATGGTGTAGAGGG
CGGTGATGAAACAGGGGCGAAACGAGCGGAGAGAGATAGAGACGGCAGCA
AAGATAAGGCAACGCGTTACTTCGGGCTTAAGTATCTGACCAGCTCGCGA
CTACTCCGACTGCAGCTCAGGGATCCCACGCTCAGGCTTCAGGTACCACC
TGTTGCTTTGGTATATGTTTGCCGTTTGCCCTAAACACTCGGAAGATGTT
GAGGAAGAAGTTGCCGGTATTTTTTTGTGAGGGTTTGTGTGTGATCGTGT
GTGTTGGTGCGTGTCTTTTGCCATGGATGTGCTCGGTGTTTCGTTTTGGA
GCGCTTTCATATATATATGTTGACGTCTTTCATACGTACAACAATGCGTG
TACATTGAGGTGATAGTGTGTGTGTGTGTATATATACTTTTATTTGGATC
AAAGTATGACATGAGTCGTTCAGTGTACATCTGACAAAATCAGAATTGCA
AGGTAACGTGCAAGTGTTTGGGTACATGTTGTGCGTTGAAATTTTTCGGA
AATTCCCGCTGTGTGCTAACACAAAGGAGGCATCTTGTCGTAGTTGACAG
CCTACAGTAGGAAAATTAAAAGAGGAGGTAGAGGAGTGCTAGTCATTCAT
TCCCCCTAGTGCACTATTACTACTACTACTACTACTACTACTACTACTAC
TACAATCGCACTGGGGATATTGAATATATGAGCTAGCAATTCCAATTTCA
GTCTATGAAGTCAAGAGTAAGTTAGATAGAAGGAGAGATGAATAGATACA
TGAATAGATAGATATCGGCTAGTTGTCTTTCTTGTATAGTTTGCTGCTTG
TTTTGCTGAACGTACATTTTGTGGGGTGAAAAAAAAAAAAAAAAATCACG
CATAAAAACATTTGGATATTAGCATGGAATAGCTTTTTTTGTTTTCGGAA
ACGAATCTTAAGCGTATTATTTCATGTGGAATATTTTGATGCTGATGCTG
TTCTGAAAGGATTCTTGTGTGTGTGTTTTTTTTGTTTTTTTTAAAATATT
TTTTTGTGATATTTCCTTTCGGCAGGTATTGACCCAATGGTTGATCATCG
CAGCGTCGCTCAAGAGCCAAATCGGTCTGGCCAATGACTCGCCGGTGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig29155:941..2240-

>mRNA_H-paniculata_contig29155.7952.1 ID=mRNA_H-paniculata_contig29155.7952.1|Name=mRNA_H-paniculata_contig29155.7952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig29155:941..2240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAGATTTTAGGCGCTTTCGAGGCCAACGCCTTCTCCGAGCATGA
TCTGCGTTTGGCCAGGGAGCGGTGGGCTGCATCAAGTGGTAACACCACCA
ACACCACGAACAACAACAATAATGCCAACACCAATACCCCGGTCAAACGA
AAGCGGGCCCAAGTGTGCGCGATGGACGTGGTGGGGGATGGTGTAGAGGG
CGGTGATGAAACAGGGGCGAAACGAGCGGAGAGAGATAGAGACGGCAGCA
AAGATAAGGCAACGCGTTACTTCGGGCTTAAGTATCTGACCAGCTCGCGA
CTACTCCGACTGCAGCTCAGGGATCCCACGCTCAGGCTTCAGATGCGGCA
GATTTTAGGCGCTTTCGAGGCCAACGCCTTCTCCGAGCATGATCTGCGTT
TGGCCAGGGAGCGGTGGGCTGCATCAAGTGGTAACACCACCAACACCACG
AACAACAACAATAATGCCAACACCAATACCCCGGTCAAACGAAAGCGGGC
CCAAGTGTGCGCGATGGACGTGGTGGGGGATGGTGTAGAGGGCGGTGATG
AAACAGGGGCGAAACGAGCGGAGAGAGATAGAGACGGCAGCAAAGATAAG
GCAACGCGTTACTTCGGGCTTAAGTATCTGACCAGCTCGCGACTACTCCG
ACTGCAGCTCAGGGATCCCACGCTCAGGCTTCAGGTATTGACCCAATGGT
TGATCATCGCAGCGTCGCTCAAGAGCCAAATCGGTCTGGCCAATGACTCG
CCGGTGAGTGTATTGACCCAATGGTTGATCATCGCAGCGTCGCTCAAGAG
CCAAATCGGTCTGGCCAATGACTCGCCGGTGAGT
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