mRNA_H-paniculata_contig2914.7947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 239 bits (610), Expect = 2.950e-69 Identity = 127/310 (40.97%), Postives = 174/310 (56.13%), Query Frame = 1
Query: 217 SGLLALQGVLISSTRAIPDEHGVVAEPDRAPLHPHSTCADVLRWTPSRQEPAIVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDD-DARATMADEGIPCVPIHRVK--SLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQSSDMNFYNSTGIGKGIVTSLPGN----FTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLWNVD 1125
S L+ V + A HG + P +TCAD ++W P R +PAIV+QVVS+ ++ ++ NF+ LME S TR++LYLMC+D+ + I C+P+ S ++W LR + CL+ G +V +SD+DALWL DP D L V + +V RG +P EWG TMCMGF LFR+ R + + M + K DDQ+++N+AA NLG+VWDQ SDM + S G G + +L F+V LLPH+ Y R CDETPISN TVVAHC + K K WM + LW D
Sbjct: 7 SCLVLATAVFCGRSAAEEVAHGPAVSRRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSD 316
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 236 bits (602), Expect = 9.860e-68 Identity = 137/328 (41.77%), Postives = 181/328 (55.18%), Query Frame = 1
Query: 250 SSTRAIPDEHGVVAEPDRA--------------------PLHPHSTCADVLRWTPSRQEPAIVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDDDARATMADEGIPCV-------PIHRVKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQSSDMNFYNSTGIGKGIVTSLPGN---FTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLWNVDDTSVKG 1143
SSTRA G AEPD A P+ S+C+D+L W P R PA+V QVVS+ + ++ NF+ ME S F+RENLYL+CLD+++ A GI CV P+ R+ +W LRV CLL G +V +SD+DA+WL DP D A + ++V R P+ +WG T+CMGFA FR+ M + + E + + GDDQ A+N A LGVVWD +SDM+F NST G G++ ++ N V LLPH+KY R C TPISNDT+VAHC S K WMK AHLWN+ D + G
Sbjct: 28 SSTRAA----GPNAEPDEADIVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRL----DVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGG-SAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDSG 346
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.600e-66 Identity = 123/289 (42.56%), Postives = 170/289 (58.82%), Query Frame = 1
Query: 307 PLHPHSTCADVLRWTPSRQEPAIVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDDDARATMADEGIPCV-------PIHRVKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQSSDMNFYNSTGIGKGIVTSLP---GNFTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLWNVDDTSVKG 1143
P+ S+C+D+L W P R PA+V QVVS+ + ++ENF+ ME S F+RENLYL+CLD+++ A GI CV P+ R +W LR+ CLL G +V +SD+DA+WL DP D+A + ++V R P+ +WG T+CMGFA FR+ M + + E + G+DQ+A+N A L VVWD SDMNF ++T G G++ ++ G+ V LLPH+KY R C TPISNDT+VAHC S K WMK AHLWN+ D + G
Sbjct: 138 PITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSR----GDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGG-SAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDSG 421
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 231 bits (589), Expect = 3.540e-65 Identity = 125/281 (44.48%), Postives = 169/281 (60.14%), Query Frame = 1
Query: 319 HSTCADVLRWTPSRQEPAIVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDDDARATMADEGIPCV-------PIHRVKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSRDREGMALYQ--NAMRENIAKTGDDQVALNMAAYNLGVVWDQSSDMNFYNSTGIGKGIVTSLPG--NFTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLWNVDD 1128
H++CAD++ W P + +PA+V QVVSK++V VQ+NF+ ME S F+REN+YL+CLD+++ + GI CV P+ R +W LR+ CLL G +V +SD+DA+WL DP+ D + IV RG P WG T+CMGF LFR+ A+YQ + E + +DQ A+N+A L VVWD +SDM+F +ST G G+V S+ + TV+LLPH+KY R C TPIS +TVVAHC S K WMK AHLWNV D
Sbjct: 125 HASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSR----HHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN---AIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPD 398
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 225 bits (574), Expect = 9.330e-64 Identity = 126/308 (40.91%), Postives = 174/308 (56.49%), Query Frame = 1
Query: 322 STCADVLRWTPSRQEPAIVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDDDARATMADE-GIPCVPIHRVK--SLRQLWNLRVHTLGCLLA-GGWNVFLSDSDALWLSDPIVDMALAGVN-EIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQSSDMNFYNSTGIGKGIVTSLPGN--------------------------------FTVALLPHSKYIRHCDETPISNDT-VVAHCRSRKKD-GDKLRWMKSAHLWNVDD 1128
+TC D W P R PA+V+QVVS+ ++ ++ NF+ LME S FTR N+YLMC+DD ++ + GI CVP+ + + +W LRV + CLL G +V +SD+DALWL+DP D+ G DIV RG +P Q EWG T+CMGF LFR+R+ GM + + M + + + DDQ+++N AA LG+VWD++SDM + STG G+GI+ L + F V LLPHS Y R C +SN T VVAHC +K+ G K WMK A+LW+V D
Sbjct: 34 ATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQD 341
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.580e-41 Identity = 85/180 (47.22%), Postives = 109/180 (60.56%), Query Frame = 1
Query: 607 GWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSR-DREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQS-SDMNFYNSTGIGKGIVTSLPGN----FTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLWNVDD 1128
G +V +SD+DALWL+DP+ D +L GV IV RG +P + WG T+CMGF LFR+ R M + M + + DDQ+A+N+AA +LG+VW+Q SDM + STG G G + SL + FTV LLPHS Y R C TP+SN TVVAHC S K K WM LW VD+
Sbjct: 67 GHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDE 246
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.790e-29 Identity = 66/153 (43.14%), Postives = 91/153 (59.48%), Query Frame = 1
Query: 433 MEERSCFTRENLYLMCLDDDARATMAD-EGIPCVPIH--RVKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSR-DREGMALYQNAMRENIAKTGDDQVALNMAAY 879
ME R+ FTR +LYLMCLDDD+ GI C+P+ + S Q+W LRV + CL G +V +SD+DALWL+DP+ D +L GV + IV RG P + WG TMCMGF LFR+ +R M + M + ++ DDQ+A+ M +
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAVCMERF 153
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: UPI001480A979 (putative nucleotide-diphospho-sugar transferase n=1 Tax=Ruegeria lacuscaerulensis TaxID=55218 RepID=UPI001480A979) HSP 1 Score: 80.9 bits (198), Expect = 4.880e-13 Identity = 66/258 (25.58%), Postives = 116/258 (44.96%), Query Frame = 1
Query: 373 IVLQVVSKSFVYVQENFLILMEERSCFTRENLYLMCLDDDARATMADEGIPCVPIHRVKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGG-YPYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWDQSSD----MNFYNST-----GIGKGIVTSLPGNFTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWMKSAHLW 1116
+V+ V K ++ V N+L F ++ + CLD + G+ ++ S LW LR+ L L+ G ++ +DSD +WL+DP+++ +G D++ +G +P +++ G +C G LFR G + + + E++ T DDQ ++N + VWD+S + F NST +G+ T T+ L+PH R D T + + + H S K KL + L+
Sbjct: 11 LVVTFVDKRYIPVLANWLAFACRVGNF---DICIYCLDRETEDFAKAAGLGVESVNWDGSFENLWALRLRILADLVEEGRSIVHTDSDCIWLADPLLNGFGSGA---DLIFSQGTIHPASVHEKLGFVLCCG--LFRVNPGAGGSQFLRKLAEHVEHTKDDQASVNELLLSAETVWDRSDTPDYRLRFRNSTFPCWTETLRGVCTR--EQITIDLVPHKLVQRIPDPTALEREVIAKHHFSAKDAKAKLDEFRKQGLY 258
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: A0A482SMP5_9ARCH (Nucleotid_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMP5_9ARCH) HSP 1 Score: 80.1 bits (196), Expect = 5.480e-12 Identity = 64/257 (24.90%), Postives = 102/257 (39.69%), Query Frame = 1
Query: 544 VKSLRQLWNLRVHTLGCLLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGYPYKQNDEWGVTMCMGFALFRSR------------DREGMALYQNAMRENIAKTG----------------------------DDQVALNMAAYNLGVVWDQ---SSDMNFYNSTGIGKGIVTSLPGNFTVALLPHSKYIRHCDETPISN--------------------DTVVAHCRSRKKDG-DKLRWMKSAHLWNV 1122
V +W R+ + +L G ++ LSD+DA WLS+P D+ N ++ RG YP+ + WG T+CMGF ++ D + + L+Q A R + K DDQ ++N N+ + W + SS +N ++ GIV V LLP +KY+R+C ++P+S + VAHC DG K ++ LW +
Sbjct: 120 VSKSSMVWMKRLEIINIMLNNGIHLILSDTDAFWLSNPYPDLNRHLANS-HVIASRGWYPWFLSRLWGSTLCMGFVYIKADEFTINLFQEVLIDMKDIELHQGAFRHYLTKNETKYIDAGNSSRVINFNLTQWQHLDNQAPDDQYSINQVLLNMDIRWPENIASSPLNISHT-----GIVDWRGEQHFVTLLPETKYVRNCADSPLSRLGRMRYPSSRLRGIIRKRLANATVAHCLIAPGDGVKKQNYLVFYTLWQL 370
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Match: A0A354V5R7_9PROT (Nucleotid_trans domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V5R7_9PROT) HSP 1 Score: 59.3 bits (142), Expect = 1.260e-5 Identity = 50/183 (27.32%), Postives = 78/183 (42.62%), Query Frame = 1
Query: 595 LLAGGWNVFLSDSDALWLSDPIVDMALAGVNEIDIVTQRGGY-PYKQNDEWGVTMCMGFALFRSRDREGMALYQNAMRENIAKTGDDQVALNMAAYNLGVVWD-QSSDMNFYNSTGIGKGIVTSLP-------------GNFTVALLPHSKYIRHCDETPISNDTVVAHCRSRKKDGDKLRWM 1098
L+ G++V +SD+DA+WL DP+ + + D+ QR Y P +WG C GF FR + A + ++EN DDQV LN+A + W + D + + T+ + LPH K+ RH + D VV H S K D +K++ +
Sbjct: 159 LVKTGYDVVMSDADAVWLRDPVPYL-----RDADVAFQRIVYHPPAIASQWGFAACGGFNAFRGGVKT-TAFLERCVQENRILF-DDQVVLNLALLDEDPHWHCEHPDWTLPSRQNDRSALETAFARCANAPIRGDLKTSGLQLLALPHDKFWRHAFVSTPVRDMVVCHPNSPKDDLEKMQLL 334 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2914.7947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2914.7947.1 >prot_H-paniculata_contig2914.7947.1 ID=prot_H-paniculata_contig2914.7947.1|Name=mRNA_H-paniculata_contig2914.7947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp MRIPSLQLSSGLLALQGVLISSTRAIPDEHGVVAEPDRAPLHPHSTCADVback to top mRNA from alignment at H-paniculata_contig2914:13570..19199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2914.7947.1 ID=mRNA_H-paniculata_contig2914.7947.1|Name=mRNA_H-paniculata_contig2914.7947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5630bp|location=Sequence derived from alignment at H-paniculata_contig2914:13570..19199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2914:13570..19199+ >mRNA_H-paniculata_contig2914.7947.1 ID=mRNA_H-paniculata_contig2914.7947.1|Name=mRNA_H-paniculata_contig2914.7947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig2914:13570..19199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |