mRNA_H-paniculata_contig29101.7939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29101.7939.1
Unique NamemRNA_H-paniculata_contig29101.7939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig29101.7939.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.340e-9
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 NGQVVWDGLIAKFQKNPKQRHRILMRQLDGMTMKQDQDPDIISAHVYRLRDELAHMGVEISEERLTDIVLEGLTDYY 231
            +G  VW  L +KFQ   + R R L R+L+  TM+   DPDI   HV+ L ++L  +G  +++E+L DI+L+GL   Y
Sbjct:  231 SGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
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BLAST of mRNA_H-paniculata_contig29101.7939.1 vs. uniprot
Match: Q6XMP8_AEDAL (AgCP7521-like protein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=Q6XMP8_AEDAL)

HSP 1 Score: 53.1 bits (126), Expect = 3.060e-5
Identity = 39/154 (25.32%), Postives = 69/154 (44.81%), Query Frame = 1 
Query:    7 QVVWDGLIAKFQKNPKQRHRILMRQLDGMTMKQDQDPDIISAHVYRLRD---ELAHMGVEISEERLTDIVLEGLTDYYDQIKYIAERDPDFSIDEIEVTTRNMCANCAAREGSSRKSRGRKSAVVVTTSTSKSSNFNGKCHSCGRIGHVMRDCR 459
            + +W  L   F K    R  ++ +Q+  + +K   D   + AH+ +  D   +L   G ++ E  +   +   L + YD +    E  P+  +    + TR +       E S   + G K A  V  +    + FNGKCH+CG+ GH+ +DC+
Sbjct:   85 KAMWKSLEDTFAKKSAGRQTLIRKQIARLHLK---DGASVRAHLLQFEDLIRQLRMAGSKLEESDVCSSLALTLPESYDALVTALENLPENELTYEVMKTRLIDEESKRNERSY--TVGDKPAAFVGENQKNGNRFNGKCHACGKRGHMKKDCK 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29101.7939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE8.340e-940.26Integrase catalytic domain-containing protein n=1 ... [more]
Q6XMP8_AEDAL3.060e-525.32AgCP7521-like protein (Fragment) n=1 Tax=Aedes alb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29101contigH-paniculata_contig29101:2497..2958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929889.9879973-CDS-H-paniculata_contig29101:2496..29581622929889.9879973-CDS-H-paniculata_contig29101:2496..2958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29101 2497..2958 +
1691481056.891059-CDS-H-paniculata_contig29101:2496..29581691481056.891059-CDS-H-paniculata_contig29101:2496..2958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29101 2497..2958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29101.7939.1prot_H-paniculata_contig29101.7939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29101 2497..2958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29101.7939.1

>prot_H-paniculata_contig29101.7939.1 ID=prot_H-paniculata_contig29101.7939.1|Name=mRNA_H-paniculata_contig29101.7939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
NGQVVWDGLIAKFQKNPKQRHRILMRQLDGMTMKQDQDPDIISAHVYRLR
DELAHMGVEISEERLTDIVLEGLTDYYDQIKYIAERDPDFSIDEIEVTTR
NMCANCAAREGSSRKSRGRKSAVVVTTSTSKSSNFNGKCHSCGRIGHVMR
DCRS
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mRNA from alignment at H-paniculata_contig29101:2497..2958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29101.7939.1 ID=mRNA_H-paniculata_contig29101.7939.1|Name=mRNA_H-paniculata_contig29101.7939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig29101:2497..2958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTCAAGTAGTGTGGGACGGCTTGATTGCAAAATTCCAAAAAAATCC
GAAGCAGAGACACCGTATTTTAATGCGGCAGCTAGATGGCATGACCATGA
AGCAGGATCAGGACCCCGACATTATTTCTGCCCATGTTTATCGGCTTAGG
GACGAACTAGCTCACATGGGGGTGGAAATTTCTGAAGAGCGTTTGACTGA
TATAGTTCTGGAAGGTCTAACCGATTACTATGACCAGATCAAATATATCG
CTGAGCGTGACCCCGATTTTAGCATCGATGAAATTGAGGTTACAACGCGC
AACATGTGCGCAAATTGTGCAGCGCGTGAGGGTTCATCACGTAAATCTAG
AGGACGTAAATCAGCCGTGGTGGTAACAACATCGACCTCAAAGTCTTCAA
ACTTCAACGGGAAGTGCCACTCCTGTGGTAGAATCGGGCATGTTATGCGT
GATTGTCGTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig29101:2497..2958+

>mRNA_H-paniculata_contig29101.7939.1 ID=mRNA_H-paniculata_contig29101.7939.1|Name=mRNA_H-paniculata_contig29101.7939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig29101:2497..2958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTCAAGTAGTGTGGGACGGCTTGATTGCAAAATTCCAAAAAAATCC
GAAGCAGAGACACCGTATTTTAATGCGGCAGCTAGATGGCATGACCATGA
AGCAGGATCAGGACCCCGACATTATTTCTGCCCATGTTTATCGGCTTAGG
GACGAACTAGCTCACATGGGGGTGGAAATTTCTGAAGAGCGTTTGACTGA
TATAGTTCTGGAAGGTCTAACCGATTACTATGACCAGATCAAATATATCG
CTGAGCGTGACCCCGATTTTAGCATCGATGAAATTGAGGTTACAACGCGC
AACATGTGCGCAAATTGTGCAGCGCGTGAGGGTTCATCACGTAAATCTAG
AGGACGTAAATCAGCCGTGGTGGTAACAACATCGACCTCAAAGTCTTCAA
ACTTCAACGGGAAGTGCCACTCCTGTGGTAGAATCGGGCATGTTATGCGT
GATTGTCGTTCCAACGGTCAAGTAGTGTGGGACGGCTTGATTGCAAAATT
CCAAAAAAATCCGAAGCAGAGACACCGTATTTTAATGCGGCAGCTAGATG
GCATGACCATGAAGCAGGATCAGGACCCCGACATTATTTCTGCCCATGTT
TATCGGCTTAGGGACGAACTAGCTCACATGGGGGTGGAAATTTCTGAAGA
GCGTTTGACTGATATAGTTCTGGAAGGTCTAACCGATTACTATGACCAGA
TCAAATATATCGCTGAGCGTGACCCCGATTTTAGCATCGATGAAATTGAG
GTTACAACGCGCAACATGTGCGCAAATTGTGCAGCGCGTGAGGGTTCATC
ACGTAAATCTAGAGGACGTAAATCAGCCGTGGTGGTAACAACATCGACCT
CAAAGTCTTCAAACTTCAACGGGAAGTGCCACTCCTGTGGTAGAATCGGG
CATGTTATGCGTGATTGTCGTTCC
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