prot_H-paniculata_contig291.7937.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig291.7937.1
Unique Nameprot_H-paniculata_contig291.7937.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length477
Homology
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 1.860e-142
Identity = 258/492 (52.44%), Postives = 318/492 (64.63%), Query Frame = 0
Query:    1 MEGVGTKAIDPSEDGVAKTTNSSTT--------KIALMPFVEVGRIVHVLDANGKSFPVRERLAEEDFKLAVQSLGAPGSVEDEGKGGDGSERRELREGE-SDRTGHEASVADAVKSRGKHKTSAPPEHPLQKAITSFDMALGELNQLVHLIDLARAGEFMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAADQLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEALAVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECLKTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVREN----LTGDIEMENSATSEGTMNELDRLEQSIARLHHSVFWEEVFDSIKVESLVDGRNGWLAHHEER--SDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDSGVPVVHVMDDEVMVRMDSQHLLGYKLV 477
            ++G+G K+ D SE GVAK               KIAL+PFV     VH  D +G +   RER  ++DF+LAVQ   A  + E E +G      R+   GE +D   + A   +A+ S G H++++  EHPLQ A+TSFDMALGELNQLVHL+DLARAGEFMALERVTP  ED A+A+ DQS R  DG   E L  +V +K +QLKGAA+QLR+ AKRLR TT VQ VFQQGVVHLRK+WRIVAPNHGKV+VPLQVGE L+VDCSFGSAGG  VP T AAGTRHRHPWLFQ+  GE G+++A     + LK FEVQLVS  TG CE S RASF  R     R  T+AAAG          G  E++    S+  M   D LEQ I+RL HSVFWEEVF+++K E+LVDG++GWL H + R  SD  G  T   +          S  KRRL+ +  +G++T   ++   V HV+DDEVMV MDS  LLGY+LV
Sbjct:   22 VQGMGPKSADVSEGGVAKXXXXXXXXXXXXXXQKIALVPFV--ADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGHPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRR--TDAAAGDCRKPPPASNGGAELKLERRSDVRM---DDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGAKRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLV 506          
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Match: D0MYT7_PHYIT (Mediator of RNA polymerase II transcription subunit 17 n=18 Tax=Phytophthora TaxID=4783 RepID=D0MYT7_PHYIT)

HSP 1 Score: 92.0 bits (227), Expect = 4.890e-16
Identity = 95/356 (26.69%), Postives = 153/356 (42.98%), Query Frame = 0
Query:  126 ITSFDMALGELNQLVHLIDLARAGEFMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAADQLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEALAVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECLKTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVRENLTGDIEMENSATSEGTMNELDRLEQS----IARLHHSVFWEEVFDSIKVESLVDGRNGWLAHHEERSDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDSGVPVVHVMDDEVMVRMDSQHLLGYKLV 477
            +     A+ EL+QL++ IDL R  +F+   R                +R     +RE L  +V  K  Q+K +   L  G + L  T   + VF QG+  + + W+I AP HG +  P + GE LAVDCS+GSAG   VP T++         +  +   E  + + G  R   +KT E  L  A+  + E    A  T    G+E   T  +  +      +++       E T  +L  LE+     +  +  SVF EE+F ++  E+L +  + W              T  A  +          +K  +   G    ST  H   + V+HV+DDE+ +R++ ++ L  KLV
Sbjct:  116 VAELQAAVAELHQLINSIDLIRRRDFLEEMRC---------------IRENTAPKREELEHLVEAKQAQVKESGAILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFVPQTRS---------IADLAYAELSRTEKGLVR---VKTPEDFLARAIQIKLE----AKDT----GKEGAFTLPSPHLVPMTKAEMDK-----LEDTPEDLKTLEERNVSILKAVQFSVFCEELFCTLMKEALQN-TSKW--------------TDTAYNI----------SKYAVKKHGRDDSSTDTH---ISVLHVLDDEIQLRVNERYHLTIKLV 403          
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Match: A0A484EDK9_BRELC (Mediator of RNA polymerase II transcription subunit 17 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDK9_BRELC)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-14
Identity = 85/352 (24.15%), Postives = 149/352 (42.33%), Query Frame = 0
Query:  126 ITSFDMALGELNQLVHLIDLARAGEFMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAADQLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEALAVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECLKTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVRENLTGDIEMENSATSEGTMNELDRLEQSIARLHHSVFWEEVFDSIKVESLVDGRNGWLAHHEERSDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDSGVPVVHVMDDEVMVRMDSQHLLGYKLV 477
            ++    A  EL+QL++ IDL R  EF+   R                +R     +RE L  +V  K   +K +   L  G + L  T   + +F QGV  + +NW+I AP HG +  P + GE LAVDCS+GSAG   VP  ++           ++   E G +   +      +T +++L++  TG+ E           H      T+      ++   D+++ ++           R E  +  +  S+F EE+F ++  E+L D    W     + S+ +                     K+      +   S+G H   + V+HV+DDE+ +R++ ++ L  KL+
Sbjct:  114 VSELQAATAELHQLINSIDLIRRHEFLEEMRC---------------IRENTAPKREELEYVVEAKRAHVKESGSILLNGVQALAKTVEKESIFFQGVTEMLRNWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSLFVPQHRSIADLA----YAELSRTEKGLILVKTPENFLARTIQLKLIAKDTGK-EGKYTLPSPPLLH-----KTKTEMDKLDDKPADLKVLSN-----------RNESILKAVQFSIFCEELFYTLMKEALHDASK-WTDTAYDISNYD--------------------VKKHNKDDSS---SSGTH---ISVLHVLDDEIHLRVNERYHLTIKLI 402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYM3_ECTSI1.860e-14252.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D0MYT7_PHYIT4.890e-1626.69Mediator of RNA polymerase II transcription subuni... [more]
A0A484EDK9_BRELC1.170e-1424.15Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019313Mediator complex, subunit Med17PANTHERPTHR13114TRANSCRIPTIONAL CO-ACTIVATOR CRSP77-RELATEDcoord: 99..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig291contigH-paniculata_contig291:35925..38557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig291.7937.1mRNA_H-paniculata_contig291.7937.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig291 35925..38566 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig291.7937.1 ID=prot_H-paniculata_contig291.7937.1|Name=mRNA_H-paniculata_contig291.7937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp
MEGVGTKAIDPSEDGVAKTTNSSTTKIALMPFVEVGRIVHVLDANGKSFP
VRERLAEEDFKLAVQSLGAPGSVEDEGKGGDGSERRELREGESDRTGHEA
SVADAVKSRGKHKTSAPPEHPLQKAITSFDMALGELNQLVHLIDLARAGE
FMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAAD
QLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEAL
AVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECL
KTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVRENLTGDIE
MENSATSEGTMNELDRLEQSIARLHHSVFWEEVFDSIKVESLVDGRNGWL
AHHEERSDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDS
GVPVVHVMDDEVMVRMDSQHLLGYKLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019313Mediator_Med17