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Homology
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Match: D7FYM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM3_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 1.030e-142 Identity = 259/495 (52.32%), Postives = 319/495 (64.44%), Query Frame = 1
Query: 1 LGAMEGVGTKAIDPSEDGVAKTTNSSTT--------KIALMPFVEVGRIVHVLDANGKSFPVRERLAEEDFKLAVQSLGAPGSVEDEGKGGDGSERRELREGE-SDRTGHEASVADAVKSRGKHKTSAPPEHPLQKAITSFDMALGELNQLVHLIDLARAGEFMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAADQLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEALAVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECLKTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVREN----LTGDIEMENSATSEGTMNELDRLEQSIARLHHSVFWEEVFDSIKVESLVDGRNGWLAHHEER--SDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDSGVPVVHVMDDEVMVRMDSQHLLGYKLV 1440
L ++G+G K+ D SE GVAK KIAL+PFV VH D +G + RER ++DF+LAVQ A + E E +G R+ GE +D + A +A+ S G H++++ EHPLQ A+TSFDMALGELNQLVHL+DLARAGEFMALERVTP ED A+A+ DQS R DG E L +V +K +QLKGAA+QLR+ AKRLR TT VQ VFQQGVVHLRK+WRIVAPNHGKV+VPLQVGE L+VDCSFGSAGG VP T AAGTRHRHPWLFQ+ GE G+++A + LK FEVQLVS TG CE S RASF R R T+AAAG G E++ S+ M D LEQ I+RL HSVFWEEVF+++K E+LVDG++GWL H + R SD G T + S KRRL+ + +G++T ++ V HV+DDEVMV MDS LLGY+LV
Sbjct: 19 LSHVQGMGPKSADVSEGGVAKXXXXXXXXXXXXXXQKIALVPFV--ADPVHQYDGDGNASCARERSVQDDFQLAVQQTLADHAKEVEDQGDSHGHPRDTGAGEGNDDLENGAKKEEAIGSGGTHESASLAEHPLQSAVTSFDMALGELNQLVHLVDLARAGEFMALERVTPSDEDQARAMSDQSARPGDGVPPEALPSLVTMKRSQLKGAAEQLRERAKRLRETTKVQLVFQQGVVHLRKSWRIVAPNHGKVNVPLQVGEPLSVDCSFGSAGGKSVPFTAAAGTRHRHPWLFQLTCGEGGRLEAQPSNTQGLKAFEVQLVSVQTGMCEHSLRASFPARSDRCRR--TDAAAGDCRKPPPASNGGAELKLERRSDVRM---DDLEQHISRLQHSVFWEEVFETLKAEALVDGKDGWLVHQDARCGSDVVGPRTGTPAMAPEVVGRIESGAKRRLVGLSPRGMTTSTLNARARVAHVLDDEVMVEMDSHSLLGYRLV 506
BLAST of mRNA_H-paniculata_contig291.7937.1 vs. uniprot
Match: D0MYT7_PHYIT (Mediator of RNA polymerase II transcription subunit 17 n=18 Tax=Phytophthora TaxID=4783 RepID=D0MYT7_PHYIT) HSP 1 Score: 92.0 bits (227), Expect = 5.010e-16 Identity = 95/356 (26.69%), Postives = 153/356 (42.98%), Query Frame = 1
Query: 385 ITSFDMALGELNQLVHLIDLARAGEFMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAADQLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEALAVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECLKTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVRENLTGDIEMENSATSEGTMNELDRLEQS----IARLHHSVFWEEVFDSIKVESLVDGRNGWLAHHEERSDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDSGVPVVHVMDDEVMVRMDSQHLLGYKLV 1440
+ A+ EL+QL++ IDL R +F+ R +R +RE L +V K Q+K + L G + L T + VF QG+ + + W+I AP HG + P + GE LAVDCS+GSAG VP T++ + + E + + G R +KT E L A+ + E A T G+E T + + +++ E T +L LE+ + + SVF EE+F ++ E+L + + W T A + +K + G ST H + V+HV+DDE+ +R++ ++ L KLV
Sbjct: 116 VAELQAAVAELHQLINSIDLIRRRDFLEEMRC---------------IRENTAPKREELEHLVEAKQAQVKESGAILLDGVEALAKTVEKESVFFQGITQMLRKWKICAPIHGNIPKPFRAGEPLAVDCSYGSAGSFFVPQTRS---------IADLAYAELSRTEKGLVR---VKTPEDFLARAIQIKLE----AKDT----GKEGAFTLPSPHLVPMTKAEMDK-----LEDTPEDLKTLEERNVSILKAVQFSVFCEELFCTLMKEALQN-TSKW--------------TDTAYNI----------SKYAVKKHGRDDSSTDTH---ISVLHVLDDEIQLRVNERYHLTIKLV 403
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 102.8 |
| Seed ortholog evalue | 4.4e-19 |
| Seed eggNOG ortholog | 157072.XP_008871707.1 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 28NDY@1,2QUZE@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 1440 |
| Cds size | 1431 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig291.7937.1 >prot_H-paniculata_contig291.7937.1 ID=prot_H-paniculata_contig291.7937.1|Name=mRNA_H-paniculata_contig291.7937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp
MEGVGTKAIDPSEDGVAKTTNSSTTKIALMPFVEVGRIVHVLDANGKSFP
VRERLAEEDFKLAVQSLGAPGSVEDEGKGGDGSERRELREGESDRTGHEA
SVADAVKSRGKHKTSAPPEHPLQKAITSFDMALGELNQLVHLIDLARAGE
FMALERVTPKGEDPAKAILDQSVRARDGAQREVLTEMVNLKSTQLKGAAD
QLRQGAKRLRGTTSVQRVFQQGVVHLRKNWRIVAPNHGKVDVPLQVGEAL
AVDCSFGSAGGHPVPSTQAAGTRHRHPWLFQIVSGEAGQVKAGSQRRECL
KTFEVQLVSAVTGRCERSRRASFTQRCHGRERVNTEAAAGVRENLTGDIE
MENSATSEGTMNELDRLEQSIARLHHSVFWEEVFDSIKVESLVDGRNGWL
AHHEERSDSEGGATRLASTLDGANTGTGSRTKRRLMSIGAKGVSTGEHDS
GVPVVHVMDDEVMVRMDSQHLLGYKLV back to topmRNA from alignment at H-paniculata_contig291:35925..38566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig291.7937.1 ID=mRNA_H-paniculata_contig291.7937.1|Name=mRNA_H-paniculata_contig291.7937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2642bp|location=Sequence derived from alignment at H-paniculata_contig291:35925..38566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGTGCTATGGAAGGGGTGGGAACGAAAGCTATAGATCCGAGCGAAGA
TGGCGTTGCCAAAACTACCAACAGCTCAACAACCAAGATCGCTCTCATGC
CGTTCGTCGAAGTGGGTCGTATCGTCCATGTGCTTGATGCAAATGGAAAG
AGCTTCCCAGTCAGGTGACAAAATTTATAAGCTTGTCTCTGCCAGGTCAT
TCTTGATACTGCTAGCTCTCTGTGCTAGTCCAATGTTGTGATGTGACCTT
TGAAAATCTTGTCGGTTCACAATTAACACCCAACCGCCCATTTCAGGGAG
CGCTTGGCAGAGGAAGACTTTAAGCTCGCGGTGCAGAGCCTTGGCGCGCC
TGGTAGTGTTGAGGATGAAGGCAAAGGGGGTGATGGGAGTGAGAGACGAG
AACTCCGCGAGGGTGAAAGCGATCGAACAGGACATGAAGCGAGTGTTGCG
GATGCTGTAAAATCTAGAGGGAAGCGTGGCTTGGCAGTCGCTGAGAGTGA
GAGTGAGGCAACCGAAACCACGCGCACTTCAGACAAAACGTCGGCTCCTC
CTGAACATCCGTTGCAGAAAGCCATCACATCGTTTGACATGGCGTTGGGA
GAGCTCAACCAGCTTGTCCACCTGATCGATCTGGCCAGGGCTGGGGAATT
TATGGCCTTGGAGAGAGTCACGCCGAAAGGGGAAGACCCAGCCAAAGCGA
TTCTAGACCAGTCGGTGAGCAGTAGTTGACAATAGTGAACAATGCGGCGT
AACTCATCTCGGCCACCTTGATCATTTCAGTTTGATGGAACATGAGACGT
CCGGGTAAGTGTAATATTTTGCCACCCATCACCCATCTCAAAAGCACTTT
GACCTAGGCGTTGTTGCCAACAGAAGATACTGGCATTGGTCCCATGTAAT
TGTCCGATGTTTAAATCACGTTCTGGCAATGCAGTGAAGTTATACTCTTT
TACACACAGCATGGATCCCAGCAATTTAGATGCTCATGTTGCTTGCACGC
GATACTCGCACACTGTTGACGTGCGTGAATACTGGATAGTACTGGTGAAC
GAAGCTTTGAACTAGTGTGGTATTGGGCCCAATAAACATCGTGCTTTTTC
GGTTGTATTTTCCGTAAACAGACATGGGCTACACCCCATCTGCTTGAAGT
GTGATACTGCAGATTAAACTTATCCATAAATCTAACCCCAGAAAGTTGGC
CGGGTGTTCAAATATACGAAGTCCGTGCACGAGATGAGTGCTAGCTCTAC
TGCAAGAGCATCTCGCGGACTTGCTGTCGCTGCCGATCTTTGATTCTTGC
CTGCCGTGCACAGGTGAGGGCCCGTGATGGAGCACAAAGGGAAGTTCTCA
CAGAAATGGTAAATCTGAAGAGTACCCAGTTGAAAGGGGCAGCGGATCAG
CTCCGTCAGGGAGCCAAGCGGCTTCGAGGAACGACAAGCGTTCAACGAGT
GTTTCAACAAGGCGTCGTGCACTTGCGAAAGAATTGGAGAATCGTCGCCC
CGAATCACGGCAAGGTATGCTATACTTCCTTTTAGTGGCTAGTTGCTTTT
GGCACGCTGTATCGGTTGTGAACAAACCCATTCGTACTATTCTCCGTCCA
TCAGTCCTTGCCTTTAGAAATGCCTTTTATGTGGAAGATATCGGCAACCC
TCACCTATTCGTGTTTTTTTGTGTCGCATACTGAATACAGTCGTTTGTGG
TAGGTTGACCTGTGGGCGATACCGGAGTTTGGCGTATTAACACACTGAAA
CACTCTTCATTGGTCTAAGGTGTTGTGAATGCGGAATAAGTTTTCATGGT
AAATGATACATACCTCTCACAAACGTTTTAGCTGTTTAATCGATATTGCC
TTATCTAGCACTTGCATTGTCCGCCCTACGGCGACTGATCATGTTTATCT
CGAACAACTGTTGCTGTGATATATGTAGGTCGATGTACCGCTTCAAGTGG
GTGAAGCACTGGCAGTCGACTGCAGTTTCGGAAGTGCTGGTGGGCACCCA
GTGCCGTCTACTCAGGCAGCCGGTACTCGTCACAGACATCCGTGGCTGTT
TCAAATTGTGTCAGGCGAAGCAGGCCAAGTAAAGGCCGGATCTCAACGAA
GGGAATGTCTTAAGACATTCGAAGTGCAGCTCGTGTCAGCAGTCACCGGC
CGTTGCGAAAGATCTCGTCGGGCCAGCTTCACGCAACGGTGTCATGGTCG
GGAGAGAGTAAACACGGAAGCTGCAGCGGGAGTTCGGGAAAACTTAACGG
GTGACATAGAAATGGAGAATTCTGCTACCAGTGAAGGTACCATGAACGAG
CTGGATAGACTTGAGCAAAGTATAGCTCGTCTACACCACAGTGTCTTCTG
GGAGGAAGTATTCGACTCCATCAAGGTGGAGTCCCTTGTGGACGGACGCA
ATGGTTGGCTGGCACATCACGAAGAGAGAAGCGACTCCGAGGGTGGAGCC
ACCCGATTGGCATCAACGCTCGATGGTGCGAATACAGGCACAGGATCTAG
AACAAAGCGCAGGTTGATGAGTATTGGTGCTAAAGGCGTTTCAACTGGCG
AGCACGACTCAGGAGTACCGGTGGTACACGTCATGGACGATGAGGTGATG
GTGAGAATGGATAGTCAACACCTTCTGGGTTACAAATTGGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig291:35925..38566- >mRNA_H-paniculata_contig291.7937.1 ID=mRNA_H-paniculata_contig291.7937.1|Name=mRNA_H-paniculata_contig291.7937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2862bp|location=Sequence derived from alignment at H-paniculata_contig291:35925..38566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGGGGTGGGAACGAAAGCTATAGATCCGAGCGAAGATGGCGTTGC
CAAAACTACCAACAGCTCAACAACCAAGATCGCTCTCATGCCGTTCGTCG
AAGTGGGTCGTATCGTCCATGTGCTTGATGCAAATGGAAAGAGCTTCCCA
GTCAGATGGAAGGGGTGGGAACGAAAGCTATAGATCCGAGCGAAGATGGC
GTTGCCAAAACTACCAACAGCTCAACAACCAAGATCGCTCTCATGCCGTT
CGTCGAAGTGGGTCGTATCGTCCATGTGCTTGATGCAAATGGAAAGAGCT
TCCCAGTCAGGGAGCGCTTGGCAGAGGAAGACTTTAAGCTCGCGGTGCAG
AGCCTTGGCGCGCCTGGTAGTGTTGAGGATGAAGGCAAAGGGGGTGATGG
GAGTGAGAGACGAGAACTCCGCGAGGGTGAAAGCGATCGAACAGGACATG
AAGCGAGTGTTGCGGATGCTGTAAAATCTAGAGGGAAGCGGAGCGCTTGG
CAGAGGAAGACTTTAAGCTCGCGGTGCAGAGCCTTGGCGCGCCTGGTAGT
GTTGAGGATGAAGGCAAAGGGGGTGATGGGAGTGAGAGACGAGAACTCCG
CGAGGGTGAAAGCGATCGAACAGGACATGAAGCGAGTGTTGCGGATGCTG
TAAAATCTAGAGGGAAGCACAAAACGTCGGCTCCTCCTGAACATCCGTTG
CAGAAAGCCATCACATCGTTTGACATGGCGTTGGGAGAGCTCAACCAGCT
TGTCCACCTGATCGATCTGGCCAGGGCTGGGGAATTTATGGCCTTGGAGA
GAGTCACGCCGAAAGGGGAAGACCCAGCCAAAGCGATTCTAGACCAGTCG
ACAAAACGTCGGCTCCTCCTGAACATCCGTTGCAGAAAGCCATCACATCG
TTTGACATGGCGTTGGGAGAGCTCAACCAGCTTGTCCACCTGATCGATCT
GGCCAGGGCTGGGGAATTTATGGCCTTGGAGAGAGTCACGCCGAAAGGGG
AAGACCCAGCCAAAGCGATTCTAGACCAGTCGGTGAGGGCCCGTGATGGA
GCACAAAGGGAAGTTCTCACAGAAATGGTAAATCTGAAGAGTACCCAGTT
GAAAGGGGCAGCGGATCAGCTCCGTCAGGGAGCCAAGCGGCTTCGAGGAA
CGACAAGCGTTCAACGAGTGTTTCAACAAGGCGTCGTGCACTTGCGAAAG
AATTGGAGAATCGTCGCCCCGAATCACGGCAAGGTGAGGGCCCGTGATGG
AGCACAAAGGGAAGTTCTCACAGAAATGGTAAATCTGAAGAGTACCCAGT
TGAAAGGGGCAGCGGATCAGCTCCGTCAGGGAGCCAAGCGGCTTCGAGGA
ACGACAAGCGTTCAACGAGTGTTTCAACAAGGCGTCGTGCACTTGCGAAA
GAATTGGAGAATCGTCGCCCCGAATCACGGCAAGGTCGATGTACCGCTTC
AAGTGGGTGAAGCACTGGCAGTCGACTGCAGTTTCGGAAGTGCTGGTGGG
CACCCAGTGCCGTCTACTCAGGCAGCCGGTACTCGTCACAGACATCCGTG
GCTGTTTCAAATTGTGTCAGGCGAAGCAGGCCAAGTAAAGGCCGGATCTC
AACGAAGGGAATGTCTTAAGACATTCGAAGTGCAGCTCGTGTCAGCAGTC
ACCGGCCGTTGCGAAAGATCTCGTCGGGCCAGCTTCACGCAACGGTGTCA
TGGTCGGGAGAGAGTAAACACGGAAGCTGCAGCGGGAGTTCGGGAAAACT
TAACGGGTGACATAGAAATGGAGAATTCTGCTACCAGTGAAGGTACCATG
AACGAGCTGGATAGACTTGAGCAAAGTATAGCTCGTCTACACCACAGTGT
CTTCTGGGAGGAAGTATTCGACTCCATCAAGGTGGAGTCCCTTGTGGACG
GACGCAATGGTTGGCTGGCACATCACGAAGAGAGAAGCGACTCCGAGGGT
GGAGCCACCCGATTGGCATCAACGCTCGATGGTGCGAATACAGGCACAGG
ATCTAGAACAAAGCGCAGGTTGATGAGTATTGGTGCTAAAGGCGTTTCAA
CTGGCGAGCACGACTCAGGAGTACCGGTGGTACACGTCATGGACGATGAG
GTGATGGTGAGAATGGATAGTCAACACCTTCTGGGTTACAAATTGGTTGT
CGATGTACCGCTTCAAGTGGGTGAAGCACTGGCAGTCGACTGCAGTTTCG
GAAGTGCTGGTGGGCACCCAGTGCCGTCTACTCAGGCAGCCGGTACTCGT
CACAGACATCCGTGGCTGTTTCAAATTGTGTCAGGCGAAGCAGGCCAAGT
AAAGGCCGGATCTCAACGAAGGGAATGTCTTAAGACATTCGAAGTGCAGC
TCGTGTCAGCAGTCACCGGCCGTTGCGAAAGATCTCGTCGGGCCAGCTTC
ACGCAACGGTGTCATGGTCGGGAGAGAGTAAACACGGAAGCTGCAGCGGG
AGTTCGGGAAAACTTAACGGGTGACATAGAAATGGAGAATTCTGCTACCA
GTGAAGGTACCATGAACGAGCTGGATAGACTTGAGCAAAGTATAGCTCGT
CTACACCACAGTGTCTTCTGGGAGGAAGTATTCGACTCCATCAAGGTGGA
GTCCCTTGTGGACGGACGCAATGGTTGGCTGGCACATCACGAAGAGAGAA
GCGACTCCGAGGGTGGAGCCACCCGATTGGCATCAACGCTCGATGGTGCG
AATACAGGCACAGGATCTAGAACAAAGCGCAGGTTGATGAGTATTGGTGC
TAAAGGCGTTTCAACTGGCGAGCACGACTCAGGAGTACCGGTGGTACACG
TCATGGACGATGAGGTGATGGTGAGAATGGATAGTCAACACCTTCTGGGT
TACAAATTGGTT back to top
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