mRNA_H-paniculata_contig291.7934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig291.7934.1
Unique NamemRNA_H-paniculata_contig291.7934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 3.980e-125
Identity = 177/254 (69.69%), Postives = 214/254 (84.25%), Query Frame = 2 
Query:  314 RWKRFIHLYYAVNIVIILGYGVLRQFISSSRLTTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEFKTASYGRK 1075
            RW RF+HL+Y VN  ++L YG++R ++S+ RLT++ TWTGFSQE EIIGLA ATL+SKYRK+ATFDE + R F +GK+AVA+LL+FVG+PH V Y+ILW A  L+V  PRF  P+EV  L PG+FQSMVR+SS+Q  G+R+AW+VMFHADWCS+S NLQP+F ALARR+ D NRRFAVVDIVA+PE AEDLNINT GTSKQLPTLALF  GREVCRLPTFASDG VVRARMD+RG+I YFELD+EF+T SY R+
Sbjct:   11 RWARFVHLHYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREVCRLPTFASDGSVVRARMDERGVINYFELDQEFRTTSYSRR 264
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK)

HSP 1 Score: 181 bits (459), Expect = 9.720e-51
Identity = 102/267 (38.20%), Postives = 154/267 (57.68%), Query Frame = 2 
Query:  320 KRFIHLYYAVNIVIILGYGVLR-QFISSSRLTTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNR-----RFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEFKTASY--GRKMKTRNKT 1096
            +RF+H YY  N +++L Y ++R  +     L    T  GF++E+E+I LA   L+ K+ + AT D+ +D++F  GK A   LL+++  P A  Y+++      ++ PP+      ++ +  G FQ +V+         R A +VMFH DWC   T  +P+FS +A RF+         RFA VD+V +PE+A++  ++  GTSKQLPT  LF  G EV R+PTF SDG+VV+   D +GM+K+FELDK+F   SY   R  K   KT
Sbjct:    6 QRFLHPYYLTNFLLLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVIAFVTLAVLNPPKI-LNLSIESMGMGTFQEVVKNCRDP----RRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKGEEVKRMPTFKSDGQVVKTGFDVKGMMKWFELDKDFTQTSYYLQRSKKRTGKT 267
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A6G0W734_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W734_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.130e-41
Identity = 84/242 (34.71%), Postives = 135/242 (55.79%), Query Frame = 2 
Query:  311 VRWKRFIHLYYAVNIVIILGYGVLRQFISSSRLTTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGG-TSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYF 1033
            V W+RFIH+YY +N +++L YG+ R + SS  L  K+ W   ++E +IIG+ +  +L  YRK AT D +V  +F   K AV  L Y +      ++V      ++ V  P++  P ++  LTP  F+  +RT  S        W+V F ADWC        +F+AL+ ++ ++   F  +D+  + ++A + +I+T   T+KQLP+L LF  G+EV RLP     G+VVR  +D+ G+  YF
Sbjct:    6 VSWRRFIHIYYGLNTLLVLSYGLARFYYSSEMLLKKDDWLNTTREQQIIGMLVGVVLMNYRKKATVDGIVAMVFMYAKCAVGGLFYMLDGKLFAAFVAANLVIFVAVPFPKYNGPHKLVKLTPEIFKHALRTDKSA------KWLVYFFADWCDECLYHDAMFAALSLKYANDKVHFGRMDVQRHSDIAAEYSIDTSALTTKQLPSLILFEHGKEVKRLPRMDHSGKVVRTILDEDGVATYF 241
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 9.920e-41
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 2 
Query:  446 MEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAV 847
            ME+IGLA ATL+SKYRK+ATFDE + R F +GK+AVA+LL+FVG+PH V Y+ILW                EV  L PG+FQSMVR+SS+Q  G R+AW+VMFHADWCS+S NLQP+F ALARR      RF +
Sbjct:    1 MEVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARRCVRCGFRFMI 119
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A7S2RZA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZA8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.480e-38
Identity = 89/283 (31.45%), Postives = 147/283 (51.94%), Query Frame = 2 
Query:  299 RMCGVR--------WKRFIHLYYAVNIVIILGYGVLRQF-----ISSSRLTTKETWT-GFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFEL-----DKEFKTASYGRKMKTRN 1090
            R+CGV           R   +Y+AVN ++   Y  LR +     +S + +    +W    ++E EI       L  K RK +T +++ +++F   K    +LL+F      V Y +    A++L++PP+F    E + L    F + VR     +  ++  W+V+FHADWC   T L+P+ + L+ R  D  R++  +D+V +PE+ ++ NI+    +KQLPT+  F  GRE+ RLP F SDG+VV + M ++ ++K+FEL     D   +  S G K K  N
Sbjct:    3 RVCGVSRMIDSVGDLARLCTVYHAVNALLCAAYLPLRMYWLDSEVSQAFMQEPGSWVESLTREQEIACFGAFVLFLKTRKTSTLEQVCEKVFLFSKLTTLVLLFFASKTTMVGYFLAVTVAFVLLRPPKFFGDEEFEYLHASSFDAQVRNPKGDM--RKTTWLVVFHADWCEKCTTLEPLLAKLSLRHSDEGRKWGKIDLVHFPELGKEFNIDMTPYTKQLPTVIEFFKGREIRRLPFFKSDGKVVDSTMSEQILVKHFELSTSSTDLRDRGGSGGAKKKAAN 283
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: W4H8H0_9STRA (Thioredoxin domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8H0_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.090e-38
Identity = 84/238 (35.29%), Postives = 128/238 (53.78%), Query Frame = 2 
Query:  323 RFIHLYYAVNIVIILGYGVLRQFISSSRLTTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTS-KQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYF 1033
            RF H +Y +N+++I  YGV R   +S++L  KE W G ++E +I+ + + ++L  YRK AT D ++   F   K ++  L Y +       Y I     +L+V  P++  P +   LT   F   VR  SS        W+V  HADWC        +F+ L+     +  RF  +D+ AYP++A++LNI+   T+ KQLP+L LF GG+E  RLP F   G VVR ++D  G+  YF
Sbjct:    7 RFGHAHYVLNVLLISSYGVARITRTSAKLAEKEEWLGLTREQQILFVLVGSILFNYRKKATVDGVIAMAFLYAKGSIGGLFYLLDPTLFACYAIAAVLIFLVVPYPKYAGPHKSTTLTGAFFNEHVRNGSSG------TWLVYLHADWCDECLYHDAMFADLSLAHGTDAVRFGRLDVEAYPDIAKELNIDMNATTTKQLPSLVLFEGGKETKRLPRFDHTGAVVRTKLDLTGVAVYF 238
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A830HZT9_9CHLO (Thioredoxin domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZT9_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 4.820e-30
Identity = 79/247 (31.98%), Postives = 119/247 (48.18%), Query Frame = 2 
Query:  323 RFIHLYYAVNIVIILGYGVLRQ----FISSSRLTTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEF 1051
            RF   YY VN + ++ Y  LR     +         E W     E     L +  L+ ++ + ++ DE V   F   K++VA L Y +     V Y++L+    L V  P +  P   + L P +F   V          + +W+V F A W     +++P F+ L+ RF   + RFA VD+  +P +A+   I+T G SKQLPT+ LF GGREV R+P    DGRV + R     ++K FELD  +
Sbjct:   13 RFTSPYYVVNFMSLVTYLYLRTQVLLYTDEHGARRLEDW-----EQRTSSLLVIVLIGRFLRSSSPDEFVATAFLFCKASVAFLAYSISPRLLVWYLVLFGVLELTVYQPVYRGPCRYEYLNPMEFDDRVVNEGKD--KPKDSWLVCFFASWSPPCVHVEPTFAKLSERFTTQSLRFAKVDVARWPVLAKKHGISTSGVSKQLPTIILFEGGREVARIPHVYPDGRVAKGRFFWSDLVKGFELDMRY 252
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: UPI0014713D1E (thioredoxin-related transmembrane protein 2-A n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014713D1E)

HSP 1 Score: 110 bits (274), Expect = 1.170e-23
Identity = 75/250 (30.00%), Postives = 124/250 (49.60%), Query Frame = 2 
Query:  317 WKRFIHLYYAVNIVIILGYGVLRQF--ISSSRLTTKETWTGFS---QEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEF 1051
            +K  +  YY  +  + + + V+R+   +     T +E         +E+EI     A ++ K R+  T ++ +  LF   K A A+L + + +   + Y+IL AA  +  +PP +  P  +K      F +       Q  G R++WIV F+A+W S   +  PVF+ L+ ++     RF  VDI  Y EV++   I+T   +KQLP+L LF GGRE+ R P   S GR V     +  +I+ F L++ F
Sbjct:   18 YKWLLKPYYIASFFMTVAFVVVRKAPGVCEHLATQREDRNSCDFDWRELEIFMFLAAIVMMKNRRAITLEQHIGNLFMFSKVANAVLFFRLDIRFGILYLILCAAFVMTCKPPVYMGPEYIKY-----FSAETIDEELQRDG-RVSWIVEFYANWSSDCQSFAPVFADLSVKYSGPGLRFGKVDIGRYGEVSQRYRISTSPLTKQLPSLLLFQGGREIARRPMVDSKGRAVSWAFSEENIIREFNLNELF 261
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BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: A0A3S2PQM0_ORYJA (Thioredoxin domain-containing protein n=10 Tax=Atherinomorphae TaxID=1489913 RepID=A0A3S2PQM0_ORYJA)

HSP 1 Score: 110 bits (274), Expect = 1.720e-23
Identity = 73/265 (27.55%), Postives = 128/265 (48.30%), Query Frame = 2 
Query:  317 WKRFIHLYYAVNIVIILGYGVLRQFISSSRLTTKETWTGFS-----QEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEF-KTASYGRKMKTRNK 1093
            +K  +  YY ++  + + + ++R+          +   G S     +E+EI+    A ++ K R+  T ++ +  LF   K A  IL + + +   + Y+ L  A  +  +PP +  P  +K  +       ++  S      R+ WIV F+A+W S   +  PVF+ L+ ++     RF  VDI  Y +++E   ++T   SKQLP+L LF GGREV R P   + GR V    ++  +I+ F L++ F K+    + M  R K
Sbjct:   42 YKWLLRPYYVISFTMTVAFLLVRKTPGLCEHLASDREDGNSCDFDWREVEILMFLSAIVMMKNRRAITLEQHIGNLFMFSKVANVILFFRLDIRLGILYLALCVAFVMTCKPPLYMGPEYIKYFSDKTIDEELQRDS------RVTWIVEFYANWSSECQSFAPVFADLSLKYNCAGLRFGKVDIGRYSDISERYRVSTSPLSKQLPSLLLFQGGREVMRRPMVDNKGRAVSWTFNEENIIREFNLNELFQKSKKLNKSMSLREK 300
[Close]
BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Match: M4A5T2_XIPMA (Thioredoxin domain-containing protein n=19 Tax=Cyprinodontoidei TaxID=8087 RepID=M4A5T2_XIPMA)

HSP 1 Score: 108 bits (269), Expect = 5.080e-23
Identity = 74/250 (29.60%), Postives = 123/250 (49.20%), Query Frame = 2 
Query:  317 WKRFIHLYYAVNIVIILGYGVLRQFISSSRLTTKETWTGFS-----QEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAILLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTSSSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIVAYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMDQRGMIKYFELDKEF 1051
            +K  +  YY V+ ++ + + V+R+          +   G S     +E+EI+    A ++ K R+  T ++ +  LF   K A AIL + + +   + Y+ L  A  +  +PP +  P  +K      F         Q  G R+ WIV F+A+W S   +  P+F+ L+ ++     RF  VDI  Y EV++   ++T   +KQLP+L LF GGREV R P   S GR V    ++  +I+ F L++ F
Sbjct:   18 YKWLLKPYYIVSFLLTVAFLVVRKAPGLCEHLATDREDGNSCDFDWREVEILMFLSAIVMMKNRRAITLEQHIGNLFMFSKVANAILFFRLDIRLGILYLALCVAFVMTCRPPLYMGPEYIKY-----FSDKTIDEELQKDG-RVTWIVEFYANWSSDCQSFAPIFANLSLKYNCAGLRFGKVDIGRYGEVSQRYKVSTSPLAKQLPSLLLFQGGREVMRRPMVDSKGRAVSWTFNEENIIREFNLNELF 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig291.7934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYM6_ECTSI3.980e-12569.69Thioredoxin-like protein n=1 Tax=Ectocarpus silicu... [more]
A0A6V1S3B1_HETAK9.720e-5138.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0W734_9STRA5.130e-4134.71Thioredoxin domain-containing protein n=1 Tax=Apha... [more]
A0A6H5JZG0_9PHAE9.920e-4158.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RZA8_9STRA1.480e-3831.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4H8H0_9STRA2.090e-3835.29Thioredoxin domain-containing protein n=5 Tax=Apha... [more]
A0A830HZT9_9CHLO4.820e-3031.98Thioredoxin domain-containing protein n=2 Tax=Pycn... [more]
UPI0014713D1E1.170e-2330.00thioredoxin-related transmembrane protein 2-A n=1 ... [more]
A0A3S2PQM0_ORYJA1.720e-2327.55Thioredoxin domain-containing protein n=10 Tax=Ath... [more]
M4A5T2_XIPMA5.080e-2329.60Thioredoxin domain-containing protein n=19 Tax=Cyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig291contigH-paniculata_contig291:8880..14035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.9
Seed ortholog evalue1.4e-100
Seed eggNOG ortholog2880.D7FYM6
Preferred nameTMX2
KEGG koko:K20030
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thioredoxin-related transmembrane protein
EggNOG OGsKOG0914@1,KOG0914@2759
Ec32 ortholog descriptionThioredoxin-like protein
Ec32 orthologEc-26_002790.1
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons7
Model size1231
Cds size840
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.7493112-UTR-H-paniculata_contig291:8879..91381622929888.7493112-UTR-H-paniculata_contig291:8879..9138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig291 8880..9138 +
1691481056.2822025-UTR-H-paniculata_contig291:8879..91381691481056.2822025-UTR-H-paniculata_contig291:8879..9138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig291 8880..9138 +
1622929888.9159575-UTR-H-paniculata_contig291:13903..140351622929888.9159575-UTR-H-paniculata_contig291:13903..14035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig291 13904..14035 +
1691481056.3547254-UTR-H-paniculata_contig291:13903..140351691481056.3547254-UTR-H-paniculata_contig291:13903..14035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig291 13904..14035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.7693038-CDS-H-paniculata_contig291:9138..92371622929888.7693038-CDS-H-paniculata_contig291:9138..9237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 9139..9237 +
1691481056.292178-CDS-H-paniculata_contig291:9138..92371691481056.292178-CDS-H-paniculata_contig291:9138..9237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 9139..9237 +
1622929888.7814016-CDS-H-paniculata_contig291:11945..120291622929888.7814016-CDS-H-paniculata_contig291:11945..12029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 11946..12029 +
1691481056.2998223-CDS-H-paniculata_contig291:11945..120291691481056.2998223-CDS-H-paniculata_contig291:11945..12029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 11946..12029 +
1622929888.815535-CDS-H-paniculata_contig291:12262..124341622929888.815535-CDS-H-paniculata_contig291:12262..12434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 12263..12434 +
1691481056.3077943-CDS-H-paniculata_contig291:12262..124341691481056.3077943-CDS-H-paniculata_contig291:12262..12434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 12263..12434 +
1622929888.838361-CDS-H-paniculata_contig291:12778..129801622929888.838361-CDS-H-paniculata_contig291:12778..12980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 12779..12980 +
1691481056.3159723-CDS-H-paniculata_contig291:12778..129801691481056.3159723-CDS-H-paniculata_contig291:12778..12980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 12779..12980 +
1622929888.8552375-CDS-H-paniculata_contig291:13197..133291622929888.8552375-CDS-H-paniculata_contig291:13197..13329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13198..13329 +
1691481056.3243098-CDS-H-paniculata_contig291:13197..133291691481056.3243098-CDS-H-paniculata_contig291:13197..13329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13198..13329 +
1622929888.8683987-CDS-H-paniculata_contig291:13540..136041622929888.8683987-CDS-H-paniculata_contig291:13540..13604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13541..13604 +
1691481056.332831-CDS-H-paniculata_contig291:13540..136041691481056.332831-CDS-H-paniculata_contig291:13540..13604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13541..13604 +
1622929888.8861618-CDS-H-paniculata_contig291:13816..139031622929888.8861618-CDS-H-paniculata_contig291:13816..13903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13817..13903 +
1691481056.346331-CDS-H-paniculata_contig291:13816..139031691481056.346331-CDS-H-paniculata_contig291:13816..13903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig291 13817..13903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig291.7934.1prot_H-paniculata_contig291.7934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig291 9139..13903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig291.7934.1

>prot_H-paniculata_contig291.7934.1 ID=prot_H-paniculata_contig291.7934.1|Name=mRNA_H-paniculata_contig291.7934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MAGEEGDTSTPNPRMCGVRWKRFIHLYYAVNIVIILGYGVLRQFISSSRL
TTKETWTGFSQEMEIIGLAIATLLSKYRKIATFDELVDRLFFLGKSAVAI
LLYFVGVPHAVSYVILWAAAWLLVQPPRFGFPAEVKMLTPGDFQSMVRTS
SSQISGKRLAWIVMFHADWCSASTNLQPVFSALARRFQDNNRRFAVVDIV
AYPEVAEDLNINTGGTSKQLPTLALFTGGREVCRLPTFASDGRVVRARMD
QRGMIKYFELDKEFKTASYGRKMKTRNKT*
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mRNA from alignment at H-paniculata_contig291:8880..14035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig291.7934.1 ID=mRNA_H-paniculata_contig291.7934.1|Name=mRNA_H-paniculata_contig291.7934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5156bp|location=Sequence derived from alignment at H-paniculata_contig291:8880..14035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCTTTCTTTTATTATTCCTGTTATTGCCGAAAAGAGTTGTTTCTGC
AAAATTTATAGTTCCCCTGTATGTATTTTACCTCACTGCGCATTGCCTAC
AACAATGACTGGAGATGGCTTACGTCTTGTCAGGGTTCTGGTTTCTCTGA
CCGCGAGTCCGAGAGAACAAGCAAATATGGGGACTCACACAGAACTTACG
AAGCATCAACAGACTGCATAGTAATAATATAAGTTCAGCTACTACAGAGA
CACAGCACAATGGCTGGCGAGGAAGGAGACACATCAACGCCAAATCCAAG
GATGTGTGGGGTTCGGTGGAAACGCTTCATCCACCTGTACTACGCTGTGA
ATATTGTGGTGAGCGGTGCTGTGAGGTGGTATTTACTTCATTTACCCCAA
TCTTCCAGCAGTTGAGGACACAGAAGGTAGATGGCGGTTCGGTAGAGCAC
TTCTTAGTGCAACCCCACGTCTTCCACTCTTGGTAAACAGTACAGACAGT
ACAGTACAGTGCAGTAAGCACACATACACGTCTTCGGATCGTTGGGATGA
CAAACTTGATCCGGACAAAAGATGGTGCGGTGGTAGGGGCGTCGTACAGC
TTGCCCTTTGTTGCTGCTTGCCTATGTATGATGCTCTCGCTCTGGCAGTC
GATGGGCCTAGAGTTCCGTTACTTGATTGGTGCCTGGAACTGATATTATT
TATTGATATGTATCGCCAACGTCATGCTGTTTGGTACATACAAGTTGTTC
AAGAGGCAGGAGAAATTTCGTTTCGGATCTATGCCCTCAAAATTGCAGAT
GCGTCGCTACTTGTTTTATTTATTACTACCAACATGGTATAAGTATCGAA
CGACATGTCGGGCTCGATAGCCGATTCCAGTATAGAATATAGAGGTATAC
GACAGCACATGGGGCCGACTGAAGTTGTGGTGACCAGTTATGAAATCGAT
TATTCTACATCGGTCTAAACGCCGCGAATTATCGTTGCGGCCGAAATTTC
AATGAACATCTGAAGGTCAGCTTTTGTAAAATCCAAATCAATATCGGTTT
ATTAAGGTTAGCACCCGCCTTTAGACGACTACTCCTTTAACCTAAGTTTC
TGAATGCGCATCATGTATACTTCCCCAGTTCCACTGACTATCCCCTCATC
GGATAGTTCATGTCCCTGTTGTCAAGCCCAGCATTTTTTACTCTTCATAT
TGCACTCCCTCAAGAACGGTGCTCTACGGGATCTGTGAGGTCAAGGAAGA
TGAGAAACTCAAAGCTGTTTGTATTTGTCCGAAAAGTAAAGTAACTATAC
CTCTTGAAAAACTCAGGCTAATTCTATGAACTCCACTCCACGAACATTTT
GTCTTCTTAGAGTGAAGAAAGAAGAAATATACACGCCATTTGTACTTGAG
ATGCAGCCATTTTCGAACCTCTCGCCCAAGAAACGCGATCATGGACATCT
CGCGCCACACCGATCCGCATGCAACCCCATTGAGCACATAAATACACCTG
ATCACTAGGGTCCACGTGCACACATCGTCAAACGTGTCAAGAAAGTTACG
AAGTGGTTAGGAACGAAGCACTCATCGCCTTTGGCGTGGCCTTGTCCCTT
TTAGCGCCCGAGGTTGTTTTGGAACAAAAAATGTATCTGACAACAATTAT
CGAGCCTTTCAATCATTGTGGGCAAAATCATGTCAAATCCATGCCTATGC
TGCATGTACTGTTTACAACTGGGCTGCCTCTCTGAACAGCGGGGGCTTCG
TATCCCCGTAATCATGCCACAGATGTAGTACGGGTATTACGTCGGGGTTA
ATTGGGCACCGGGCACGAAAAGGGTTAAATTATCATGTAGCACAGAGCAC
TTAGCTGTCGTAGTTTACCCTTCAATATGTGAACTGTATCTCAGGGTTAC
ATAGCGAGACCGACGGGCTAAATCGCTACTAAACCCCATTTATCAGACAT
GGCGGTTACGCTGGCCGTGTCCGCAGCTAGCGAATTCAAGCTCCTTGGTC
CTCGTTCTACATGTGTGCTGTTTATTGGTGATGTTCGCCTGCAACTCACT
ATCCAACCTGTTGCGTCTTTGATGCTGGAATTCTGCGTGGCTGGCATTTT
TCTTGTAATTACATACACTACCATAGTGTACAATCAGTTTTGTGCGTTAA
TCTTGAAGTTTCACAGCTCGGACGAAGGTCCTTCATCCGTCGATGAAGGA
TGTCGCGCGTTTTGGAACTATACCAGCACGAGGATACCTGGTGCCTTCCG
AAACCCACAAATCGATAGCATGGATATCCTGCACACCTACGAGGAATGTT
CGACTTTTAAGTACTAGCGCACCTCCACAGATATCACTACTTTCGAGCAT
CAAGTGATGACGGTTCCGTTGTGTGTTATTTACTTGAAAATCAAACGTTC
GTCCGAGCTGTGGAAAGTTCAGAATGTGCGGGCACATGAAATATAGCTTT
GCCTCCTGGTTATTCGTTTTAATAGTATTCGGTGCAATCGAAGATGGTCC
GGGGTACATGAAACAAACTTGCTACTTACGTTATGCTGAATCTCTAGTCC
AACACTTGAAAATTTTCGTCACGAATATTCGTGTTCTTCCGACGAGTGCA
GTAATTGCTCTGTAACTTGCATACTCGCTTGTCGGTCTGTGTGGAACCGT
CGACGAAGGCGCACCCAATGATTGATACTAGCTGCACCCAAGGTCTGAAC
CTCAAGTTCTTGACAGCGGCATTCGACAGGTCTCATGAAATCCGACACAT
GGCACTTCTCCATTTTCAAATCCGATAAAAGTACACTTCAAGACGAAAAA
CGAACAAAAACGCTTCAAGCGTTACGGACGATCTCGGAACTTGGCACAGG
GGCACGTAATTCTTCTGGTGTATAATCAGAAAATCAAGGTGGTATGCAAT
TCGGGACGATAATCCAGGATTAGAGTCATTAAACTGATCCATACGATATT
GGTAGCCTGCAAAAAATACGACTAAAGCATCCCTTTGATACAAACAAGCT
CGCAGCTTTCAAGCAACGATATATTTCAACCGTATGTCTGTCAATTTCAT
TGCTGTATTTCATCAGATCATACTGGGTTATGGTGTATTGCGGCAGTTCA
TCTCCTCCTCGCGACTGACGACGAAGGAGACGTGGACAGGATTTTCACAG
GTACTCATACTCTATGTTCCATTACTGCGTACGCTCAATCTGTAAGATAG
TATGGTTATTCGGGATATCGGTGAGGTTGGCCGATAGGTGGAGATAGTGT
TAATTCGTGTTTCGGGTCGTGAAATGTGCTATGTTTTACGAATCGCGAGG
TAGGGATATCACTGGCTCACTGGCTTAGCAACAACACACTGGACCGACCA
CGTGCGGCTGAACGGTTGTTTTGCCCTTTCCAGGAAATGGAAATCATAGG
CCTCGCGATAGCTACACTCCTATCCAAGTATCGCAAGATTGCGACGTTTG
ACGAGCTTGTTGATCGTCTGTTCTTTCTGGGGAAATCAGCGGTAGCGATC
CTTCTCTACTTTGTTGGTGTCCCTCATGCTGTTTCGTACGTCATCTTGTG
GGCAGGTATGTTTTATGGTGAAGAAGTATATTATGCGTGACTTTAACCCG
GCACTCGTATATTTTAGATACGACGGGCACGACTTGTTCCAGCTCGTGGT
TCGAAATTACTCGCATCGTATACCGTTAAGCTACGTCGAGCGTCGGAGGT
ACTCATTGCAGATAATAAATTCCACGTATATATATGTTCAAATGCTAGGT
CATGGAATATTTTCACGCTCGGGAATTTCTGCATTAGCACCTTCAAAAAA
GGCACCTCTTCCACTAGGATTATGTATTGACATTTACTGCAGACAATCTC
TTCATTGTAACCGTACTCGTAACAAATCCGTTATTTCACTTGCTTGCAGC
TGCGTGGCTTTTGGTGCAGCCTCCTCGTTTTGGTTTCCCCGCCGAGGTGA
AAATGCTTACTCCGGGGGACTTCCAGTCAATGGTTAGAACATCGTCCTCG
CAGATTTCGGGCAAGCGTCTGGCATGGATTGTAATGTTCCATGCAGACTG
GTGTAGCGCCAGCACTAATCTACAGCCCGTGTTTAGCGCACTCGCAAGGA
GGTGGGTGGGTACGCTCTGACAAAAACGAGTAAAGTGAGGCGAACTCTCG
CACCTGATGTTTGAGAAAAGATGGTATGTAGACGTTTCGGCAGATGACTA
GTTGAGATATCACAGGTTGTGTATGAAATGGATTGAATTTTCATTGTGAG
TTGCTGCCACTCTCTTACGCCTGCATATTACCTGATTTTCTCCAACTCTG
CCGTACGTTCATCATCAGGTTCCAAGACAATAATCGACGCTTTGCTGTTG
TGGATATTGTGGCATATCCTGAAGTAGCGGAAGATCTCAACATCAACACT
GGCGGAACGAGTAAGCAATTGCCTACGCTGGCGCTCTTCACAGGCGGAAG
GTATACATGTTCGTCTGGTCGAAGATAGAATGGACCCGATTTGATGATGC
TCTAACGACGATTCTTCGGTTCCATTTCTCCTACACCTTGGATACTTTGC
GAATCAGCATATCGTTTGCAGTACCACGTCAAATTGTCAACAATGTCTAG
TTGGCACTTTACATGATCTAAGCACCCATTTCACATTGATTGATATGCTG
GTCCTACACAGGGAGGTGTGCCGACTGCCCACTTTTGCGTCGGATGGGCG
AGTTGTGAGGGCAAGAATGGATCAGGTAAGATGATACGAAGTGATTTTAT
CCACATTACCAAGTGTTGATGTGTAAGCATCACTAAGAATAGGGACTGTG
TTGCACCTGTTCAGGAAACACTCATGACAGTAAATACCACTCGCACTACG
GTCAGTTTTTATTGGAACAAATTGTATTCTGATAGCGCGCCCGATCCTTC
GTTGCCACCGCGTGTTTCATGCGTTTCGTTGCAACAGCGTGGCATGATTA
AATACTTCGAATTGGACAAGGAGTTCAAGACAGCAAGCTACGGTCGTAAG
ATGAAAACACGTAACAAAACGTGATGGCGCGTAAATGTATTATGCTTATG
GAGAGATGGAGTCTCGCTGTTGGCAACAATTTGTCGTGATCTGTGAATTC
GTCAGGAAGATGTTGAACATTTTGAGCAGAAAATACGTCGAATCTTGTCT
ACCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig291:8880..14035+

>mRNA_H-paniculata_contig291.7934.1 ID=mRNA_H-paniculata_contig291.7934.1|Name=mRNA_H-paniculata_contig291.7934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig291:8880..14035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGCGAGGAAGGAGACACATCAACGCCAAATCCAAGGATGTGTGG
GGTTCGGTGGAAACGCTTCATCCACCTGTACTACGCTGTGAATATTGTGA
TGGCTGGCGAGGAAGGAGACACATCAACGCCAAATCCAAGGATGTGTGGG
GTTCGGTGGAAACGCTTCATCCACCTGTACTACGCTGTGAATATTGTGAT
CATACTGGGTTATGGTGTATTGCGGCAGTTCATCTCCTCCTCGCGACTGA
CGACGAAGGAGACGTGGACAGGATTTTCACAGATCATACTGGGTTATGGT
GTATTGCGGCAGTTCATCTCCTCCTCGCGACTGACGACGAAGGAGACGTG
GACAGGATTTTCACAGGAAATGGAAATCATAGGCCTCGCGATAGCTACAC
TCCTATCCAAGTATCGCAAGATTGCGACGTTTGACGAGCTTGTTGATCGT
CTGTTCTTTCTGGGGAAATCAGCGGTAGCGATCCTTCTCTACTTTGTTGG
TGTCCCTCATGCTGTTTCGTACGTCATCTTGTGGGCAGGAAATGGAAATC
ATAGGCCTCGCGATAGCTACACTCCTATCCAAGTATCGCAAGATTGCGAC
GTTTGACGAGCTTGTTGATCGTCTGTTCTTTCTGGGGAAATCAGCGGTAG
CGATCCTTCTCTACTTTGTTGGTGTCCCTCATGCTGTTTCGTACGTCATC
TTGTGGGCAGCTGCGTGGCTTTTGGTGCAGCCTCCTCGTTTTGGTTTCCC
CGCCGAGGTGAAAATGCTTACTCCGGGGGACTTCCAGTCAATGGTTAGAA
CATCGTCCTCGCAGATTTCGGGCAAGCGTCTGGCATGGATTGTAATGTTC
CATGCAGACTGGTGTAGCGCCAGCACTAATCTACAGCCCGTGTTTAGCGC
ACTCGCAAGGAGCTGCGTGGCTTTTGGTGCAGCCTCCTCGTTTTGGTTTC
CCCGCCGAGGTGAAAATGCTTACTCCGGGGGACTTCCAGTCAATGGTTAG
AACATCGTCCTCGCAGATTTCGGGCAAGCGTCTGGCATGGATTGTAATGT
TCCATGCAGACTGGTGTAGCGCCAGCACTAATCTACAGCCCGTGTTTAGC
GCACTCGCAAGGAGGTTCCAAGACAATAATCGACGCTTTGCTGTTGTGGA
TATTGTGGCATATCCTGAAGTAGCGGAAGATCTCAACATCAACACTGGCG
GAACGAGTAAGCAATTGCCTACGCTGGCGCTCTTCACAGGCGGAAGGTTC
CAAGACAATAATCGACGCTTTGCTGTTGTGGATATTGTGGCATATCCTGA
AGTAGCGGAAGATCTCAACATCAACACTGGCGGAACGAGTAAGCAATTGC
CTACGCTGGCGCTCTTCACAGGCGGAAGGGAGGTGTGCCGACTGCCCACT
TTTGCGTCGGATGGGCGAGTTGTGAGGGCAAGAATGGATCAGGGAGGTGT
GCCGACTGCCCACTTTTGCGTCGGATGGGCGAGTTGTGAGGGCAAGAATG
GATCAGCGTGGCATGATTAAATACTTCGAATTGGACAAGGAGTTCAAGAC
AGCAAGCTACGGTCGTAAGATGAAAACACGTAACAAAACGTGACGTGGCA
TGATTAAATACTTCGAATTGGACAAGGAGTTCAAGACAGCAAGCTACGGT
CGTAAGATGAAAACACGTAACAAAACGTGA
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