mRNA_H-paniculata_contig2909.7932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2909.7932.1
Unique NamemRNA_H-paniculata_contig2909.7932.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 2.910e-106
Identity = 278/674 (41.25%), Postives = 335/674 (49.70%), Query Frame = 3 
Query:  174 NEDALKEQLESLEGQLSQLTALLTRDVVDSHSPLVQLQDELKVTIDGIRWRLS--NQTRGHAAPADVEEL------------------------PTF--TVGDVCLAPRVFDRRRARAIVEKVDSDKGTCLVTWVYPRQKGELPCRYWKEG-SCKFSGPNCSFSHGVELSLADLLPDKNQLGLKPATATAGNSMAVTSSKSKAPTSETNEAAEWLRSLDAGSRVLARYHDRVWYKAVVSESTAAXXXXXAGDGS----LCVRFDGFEDEGPVCIPADTCNLAPLGESDSSTAGSRAEKDNDRIAPVSAAAEDSGEDNSDLEDAWADAPDLLG---------PEEVFFMERILGGRK--AKAVVEGSRQGKAGGGGGQGFEEGGDGAPRDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHLRGEDDIHPK-ANSRGGP----RRKKKSKNGSPSAVATAAARDEPQKAMFDFLNVTIHASAK---------------GSGEGGXXXXXASGSSANSVNFLSSSSSQIGGRSSLANRRPIFDLRKKHAAHPDSAXXXXXXXXXXXXXXXXSTGRVADKMTKSELRAHLVGAREAETALAAKIVRLEETVTRNSERDPRVAAQARQKLEEVRAQAREVRASREKAERILGDR 2003
            ++ AL+ QL  L  Q  QL AL+  D   SHSPL+ LQ+EL V IDGI  RLS   +  G                                  P+F   VG +CLAPRVFDRRRARA+VE+V+S KGTCLVTWV+PR+ GE+ CR+WKEG SCKFSGP+C FSHGVE+ L  LLPD    G                             + WL SL +GSRVLA YHDRVWY+A  +E  A      AG  +    L VRF GFE +GPV +PAD+ +LAPL E+  +          +  A   A  E      SDLEDAWA      G             FF ER+LG R+  A A            G G             + Y+ GDWEQHTKGFGSRMM RMGYRRGEGLGK KQGI+RPV IRVLPER +LDHLR +D    K A S GG                               MF+FLN T+HAS +                          A G S  S    SSSS+ I   ++         LRK       +                   G  A +M+++ELR+HLVGAREAE  LAAKI RL+ET++RN E DPR AAQARQKL++V  QA+EVR SR +AER L +R
Sbjct:    3 DQGALERQLADLRAQREQLVALVGDD---SHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDDGGGG-----------------------------SSWLASLRSGSRVLAFYHDRVWYEAT-AEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPL-EAAVTAPEIHGVGGGNGGASDDAEHEXXXXXESDLEDAWAADAVAAGRGGERDGSMTAGAFFQERVLGDRRSPAGAXXXXXXXXXXAAGSGDXXXXXXXXXLGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSC--ASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRA------GVGGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR 634
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.160e-43
Identity = 140/285 (49.12%), Postives = 166/285 (58.25%), Query Frame = 3 
Query: 1209 EVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHLRGEDDIHPK-ANSRGGPRRKKKSKNGSPSAVATAAARDEPQKA----MFDFLNVTIHAS-AKGSGEGGXXXXXASGSSANSVNFL-----SSSSSQIGGRSSLANRRPIFDLRKKHAAHPDSAXXXXXXXXXXXXXXXXSTGRVADKMTKSELRAHLVGAREAETALAAKIVRLEETVTRNSERDPRVAAQARQKLEEVRAQAREVRASREKAERILGDRADRGKGGGK 2030
            + Y+ GDWEQHTKGFGSRMM RMGYRRGEGLGK KQGI+RPV IRVLPER +LDHLR +D    K A S GG  +                            MF+FLN T+HAS +K   EG XXXXXAS      +  L     +S SS     +S+            HA               XXXXXXX       +M+++ELR+HLVGAREAE  LAAKI RL+ET++RN E DPR AAQARQKL++V  QA+EVR SR +AER L    +RG GGGK
Sbjct:   23 DAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKAEGXXXXXXASPLPGQRIRPLFDAGGASYSSSAATSTSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERAL---ENRGGGGGK 304
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BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: A0A812BPW3_SEPPH (Zinc finger CCCH-type with G patch domain-containing protein n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BPW3_SEPPH)

HSP 1 Score: 89.4 bits (220), Expect = 9.580e-15
Identity = 83/304 (27.30%), Postives = 122/304 (40.13%), Query Frame = 3 
Query:  465 DKGTCLVTWVYPRQKGELPCRYWKEGSCKFSGPNCSFSHGVELSLADLLPDKNQLGLKPATATAGNSMAVTSSKSKAPTSETNEAAEWLRSLDAGSRVLARYHDRVWYKAVVSESTAAXXXXXAGDGSLCVRFDGFEDEGPVCIPADTCNLAPLGESDSSTAGSRAEKDNDRIAPVSAAAEDSGEDNSDLEDAWADAPDLLGPEEVFFMERILGGRKAKAVVEGSRQGKAGGGGGQGFEEGGDGAPRDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHL 1376
            D    LV ++ P  +  +PC+Y+  G CKFS   C+FSHG  + L ++ P                                 E  ++  SL    + LAR+ D++WY+A V    A        DG   V F+         I  D   ++                 ++ I P S   E S E  S++  + +++ D    EE            A A+++                     AP+     +G+WE HTKGFGSR+MA+MGY  G+GLGK  +G A PV I VLP   SLD +
Sbjct:  185 DPAQILVMFINPTHRAMVPCQYFLNGKCKFSDEKCNFSHGHIVKLDEIKP--------------------------------YEEPDYS-SLQINGKCLARFTDKLWYRAKVESIEA--------DGRFVVSFE---------IKNDVLVVS-----------------HEEIMPFS---EQSKETPSEVSTSHSESDDX---EE----------ENASAIIKYI-------------------APKT-TQAMGEWEAHTKGFGSRIMAKMGYIVGQGLGKNGEGKAEPVPIEVLPSGKSLDTI 385
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: A0A5J5MNV9_MUNRE (Zinc finger CCCH-type with G patch domain-containing protein n=3 Tax=Cervidae TaxID=9850 RepID=A0A5J5MNV9_MUNRE)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-14
Identity = 106/387 (27.39%), Postives = 143/387 (36.95%), Query Frame = 3 
Query:  450 EKVDSDKGTCLVTWVYPRQKGELPCRYWKEGSCKFSGPNCSFSHGVELSLADLLPDKNQLGLKPATATAGNSMAVTSSKSKAPTSETNEAAEWLRSLDAGSRVLARYHDRVWYKAVVSESTAAXXXXXAGDGSLCVRFDGF-----EDEGPVCIPADTCNLAPLGESDSSTAGSRAEKDNDRIAPVSAAAEDSGEDNSDLEDAWADAPDLLGPEEVFFMERILGGRKAKAVVEGSRQGKAGGGGGQGFEEGGDGAPRDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHLR---------GEDDIH--PKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLNVTIHASAKGSGEGG 1562
            E+ D       V ++YP  K   PC ++ EG C+F   NC FSHG  +S+ +L P ++                                   L SL AGS  LA+  D +WY A +++            G   V+FD         EG   +P      A   +SD S A   +   + R  P SA A   G+   D E       D L P  +     +       AVVE    G A               P         WE HT+G GSR++A+MGY  G+GLG+  +G   PV   VLP   SLD            G+  I   PK  SRGG                  A    P +++FDFLN  +     G+ E G
Sbjct:  157 EEADDGSPGVRVLYLYPTHKSLKPCPFFLEGKCRFQ-ENCRFSHGQVVSVDELRPFQDPD---------------------------------LSSLQAGSACLAKRQDGLWYPAQITD---------VDSGYYTVKFDSLLLKEAVVEGDSILPPLRTEPAGSSDSDGSDADDSSYARDSRALP-SARATRPGQGAGDAE--GRPCRDALHPSGLSHCPLM------PAVVE---PGAAN--------------PGTCSSAFAGWEVHTRGIGSRLLAKMGYEFGKGLGRHAEGRVEPVHAVVLPRGKSLDQCAEILQKRTQGGQAGISKPPKCRSRGG-----------------GAGGRPPPRSVFDFLNEKLKGEVPGAPEVG 457
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: A0A1D2NDI2_ORCCI (Zinc finger CCCH-type with G patch domain-containing protein n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NDI2_ORCCI)

HSP 1 Score: 85.9 bits (211), Expect = 2.190e-13
Identity = 80/298 (26.85%), Postives = 116/298 (38.93%), Query Frame = 3 
Query:  483 VTWVYPRQKGELPCRYWKEGSCKFSGPNCSFSHGVELSLADLLPDKNQLGLKPATATAGNSMAVTSSKSKAPTSETNEAAEWLRSLDAGSRVLARYHDRVWYKAVVSESTAAXXXXXAGDGSLCVRFDGFEDEGPVCIPADTCNLAPLGESDSSTAGSRAEKDNDRIAPVSAAAEDSGEDNSDLEDAWADA--PDLLGPEEVFFMERILGGRKAKAVVEGSRQGKAGGGGGQGFEEGGDGAPRDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLD 1370
            V ++ P  K +L C ++KE  C +S  +C FSHG  + L+ L                                E NE      S+  G+RV A+YHD +WYKA V + T         DG   V +D   +EG      +TC L  +   D+                            SDL+ +  D   PDL    E+   + +LG       ++GS                           +G+WE++T GFGS++M +MGY  G GLG+ ++G   PV   VLP   SLD
Sbjct:  191 VIFLQPVVKSQLLCPFYKEDKCTYSDQDCKFSHGEVVPLSQLR-------------------------------EYNEPD--YSSIVPGTRVYAKYHDDLWYKATVKKIT--------DDGECEVSYD-VGNEGLKLPLHETCPLTGIENDDA---------------------------ESDLDSSEDDVQNPDLSSDSELEIPKTLLG--DGLLDMKGSS-------------------------ALGEWEKYTTGFGSKLMVKMGYVMGTGLGRNREGRVEPVDAIVLPPGKSLD 392
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: J3LHX4_ORYBR (G-patch domain-containing protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LHX4_ORYBR)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-12
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 3 
Query: 1209 EVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHLRGEDDIHP-----KANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLN 1520
            E  +   WE HT+G  S+MMA+MGYR G GLG + QG+  P+ ++VLP + SLDH     +++      K  SRGG R+++K      +  A AA  +E ++++F F+N
Sbjct:  103 ETAIFAKWEHHTRGVASKMMAKMGYREGMGLGASGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKKRSRGGKRKREKKF----AEQARAAKAEEEERSVFSFIN 207
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: UPI001F5D34AA (zinc finger CCCH domain-containing protein 18-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D34AA)

HSP 1 Score: 81.3 bits (199), Expect = 2.910e-12
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 3 
Query: 1203 RDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHL----RGEDD---IHPKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLN 1520
            + E  +   WEQHT+G  S+MMA+MGYR G GLG   QG+  P+ ++VLP + SLDH      GED       K  SRGG R++ K      + +A AA  +E ++++F F+N
Sbjct:  290 QSETLIFAKWEQHTRGIASKMMAKMGYREGMGLGIYGQGMVDPIPVKVLPPKQSLDHALAPTAGEDGGSKARDKKRSRGGKRKRDKKF----AELARAAKAEEAERSVFSFMN 398
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: A0A3B6QMU4_WHEAT (Uncharacterized protein n=9 Tax=Triticinae TaxID=1648030 RepID=A0A3B6QMU4_WHEAT)

HSP 1 Score: 81.3 bits (199), Expect = 2.980e-12
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3 
Query: 1203 RDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHL----RGED--DIH---PKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLN 1520
            + E  +   WEQHT+G  S+MMA+MGYR G GLG + QG+  P+ ++VLP + SLDH      GED   IH    K  SRGG R++ +      + +A AA  +E ++++F F+N
Sbjct:  294 QSETVIFAKWEQHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPAKQSLDHAVAATTGEDGRSIHRNKDKKRSRGGQRKRDRKF----AELARAAKAEEAERSVFSFMN 404
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: M7Z249_TRIUA (Zinc finger CCCH domain-containing protein 18 n=8 Tax=Triticeae TaxID=147389 RepID=M7Z249_TRIUA)

HSP 1 Score: 81.3 bits (199), Expect = 3.540e-12
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3 
Query: 1203 RDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHL----RGED--DIH---PKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLN 1520
            + E  +   WEQHT+G  S+MMA+MGYR G GLG + QG+  P+ ++VLP + SLDH      GED   IH    K  SRGG R++ +      + +A AA  +E ++++F F+N
Sbjct:  352 QSETVIFAKWEQHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVTTTTGEDGRSIHRTKDKKRSRGGQRKRDRKF----AELARAAKAEEAERSVFSFMN 462
[Close]
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Match: I1IDD7_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDD7_BRADI)

HSP 1 Score: 80.9 bits (198), Expect = 3.860e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 3 
Query: 1203 RDEVYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERCSLDHL-------RGEDDIHPKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFDFLN 1520
            + E  +   WEQHT+G  S+MMARMGYR G GLG + QG+  P+ ++VLP + SLDH         G+     K  SRGG R++ K      + +A AA  +E ++++F F+N
Sbjct:  293 QSETVIFAKWEQHTRGVASKMMARMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAATTKEDGKSIGRDKKRSRGGKRKRDKKF----AELARAAKVEEEERSVFSFMN 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2909.7932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE2.910e-10641.25Zinc finger CCCH-type with G patch domain-containi... [more]
D8LBV1_ECTSI4.160e-4349.12G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A812BPW3_SEPPH9.580e-1527.30Zinc finger CCCH-type with G patch domain-containi... [more]
A0A5J5MNV9_MUNRE1.710e-1427.39Zinc finger CCCH-type with G patch domain-containi... [more]
A0A1D2NDI2_ORCCI2.190e-1326.85Zinc finger CCCH-type with G patch domain-containi... [more]
J3LHX4_ORYBR2.180e-1238.53G-patch domain-containing protein n=1 Tax=Oryza br... [more]
UPI001F5D34AA2.910e-1240.71zinc finger CCCH domain-containing protein 18-like... [more]
A0A3B6QMU4_WHEAT2.980e-1240.87Uncharacterized protein n=9 Tax=Triticinae TaxID=1... [more]
M7Z249_TRIUA3.540e-1240.87Zinc finger CCCH domain-containing protein 18 n=8 ... [more]
I1IDD7_BRADI3.860e-1239.82Uncharacterized protein n=3 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2909contigH-paniculata_contig2909:14337..19512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue3.5e-40
Seed eggNOG ortholog2880.D8LBV1
KEGG koko:K17569
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of epidermal growth factor-activated receptor activity
EggNOG OGsKOG2185@1,KOG2185@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons4
Model size2507
Cds size1890
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2909.7932.1prot_H-paniculata_contig2909.7932.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2909 14498..19056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.5166852-UTR-H-paniculata_contig2909:14336..144971622929888.5166852-UTR-H-paniculata_contig2909:14336..14497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2909 14337..14497 +
1691481056.162062-UTR-H-paniculata_contig2909:14336..144971691481056.162062-UTR-H-paniculata_contig2909:14336..14497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2909 14337..14497 +
1622929888.5794444-UTR-H-paniculata_contig2909:19056..195121622929888.5794444-UTR-H-paniculata_contig2909:19056..19512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2909 19057..19512 +
1691481056.2169325-UTR-H-paniculata_contig2909:19056..195121691481056.2169325-UTR-H-paniculata_contig2909:19056..19512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2909 19057..19512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.530483-CDS-H-paniculata_contig2909:14497..146231622929888.530483-CDS-H-paniculata_contig2909:14497..14623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 14498..14623 +
1691481056.1822689-CDS-H-paniculata_contig2909:14497..146231691481056.1822689-CDS-H-paniculata_contig2909:14497..14623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 14498..14623 +
1622929888.5432515-CDS-H-paniculata_contig2909:15931..161831622929888.5432515-CDS-H-paniculata_contig2909:15931..16183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 15932..16183 +
1691481056.1903665-CDS-H-paniculata_contig2909:15931..161831691481056.1903665-CDS-H-paniculata_contig2909:15931..16183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 15932..16183 +
1622929888.5539174-CDS-H-paniculata_contig2909:16592..173691622929888.5539174-CDS-H-paniculata_contig2909:16592..17369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 16593..17369 +
1691481056.1985781-CDS-H-paniculata_contig2909:16592..173691691481056.1985781-CDS-H-paniculata_contig2909:16592..17369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 16593..17369 +
1622929888.5671456-CDS-H-paniculata_contig2909:18321..190561622929888.5671456-CDS-H-paniculata_contig2909:18321..19056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 18322..19056 +
1691481056.207026-CDS-H-paniculata_contig2909:18321..190561691481056.207026-CDS-H-paniculata_contig2909:18321..19056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2909 18322..19056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2909.7932.1

>prot_H-paniculata_contig2909.7932.1 ID=prot_H-paniculata_contig2909.7932.1|Name=mRNA_H-paniculata_contig2909.7932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=630bp
MVGDNEDALKEQLESLEGQLSQLTALLTRDVVDSHSPLVQLQDELKVTID
GIRWRLSNQTRGHAAPADVEELPTFTVGDVCLAPRVFDRRRARAIVEKVD
SDKGTCLVTWVYPRQKGELPCRYWKEGSCKFSGPNCSFSHGVELSLADLL
PDKNQLGLKPATATAGNSMAVTSSKSKAPTSETNEAAEWLRSLDAGSRVL
ARYHDRVWYKAVVSESTAAAAAAAAGDGSLCVRFDGFEDEGPVCIPADTC
NLAPLGESDSSTAGSRAEKDNDRIAPVSAAAEDSGEDNSDLEDAWADAPD
LLGPEEVFFMERILGGRKAKAVVEGSRQGKAGGGGGQGFEEGGDGAPRDE
VYVVGDWEQHTKGFGSRMMARMGYRRGEGLGKAKQGIARPVTIRVLPERC
SLDHLRGEDDIHPKANSRGGPRRKKKSKNGSPSAVATAAARDEPQKAMFD
FLNVTIHASAKGSGEGGQGGGRASGSSANSVNFLSSSSSQIGGRSSLANR
RPIFDLRKKHAAHPDSAAAKNGGKAAGGGGGSSSTGRVADKMTKSELRAH
LVGAREAETALAAKIVRLEETVTRNSERDPRVAAQARQKLEEVRAQAREV
RASREKAERILGDRADRGKGGGKGRLFAF*
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mRNA from alignment at H-paniculata_contig2909:14337..19512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2909.7932.1 ID=mRNA_H-paniculata_contig2909.7932.1|Name=mRNA_H-paniculata_contig2909.7932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5176bp|location=Sequence derived from alignment at H-paniculata_contig2909:14337..19512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGTTGCCCATGTCGCCGGTCTGTCTGTAGACTCAGGGTGCTATCTCT
TCCCCAACCCCCCCCCCAACCGCCCCCCCCCCGCAACCCGTAGAATGTAG
GGAGATACCTATATCGCTTTCATTTCGGTTTCGTTCGAATAATACTGTGC
GAGAGGTGGCAATGGTGGGAGATAACGAGGATGCTCTGAAGGAACAGCTG
GAGTCGCTTGAAGGTCAACTTAGCCAGCTTACAGCTCTGCTAACCCGCGA
TGTTGTTGACTCGCATTCTCCCTTGGTCCAGCTACAGGTATGCTGGCATG
ATTGTGTCGGCAGAACGTTGCAGATCCTGCCTTGATCGCAAGCTTGCTTG
AGTGACCAAAAAGAGTACTTTACTGACTTTGCTCGACTGACTTACTGTGC
TGCCGCATGATTTCCCCATTCTCGATGTACTTTTCCTACAGCTGTATATA
GCTGTATACTCATACGGTTGGTCTCCCAGATTCTTCCAGTCGATACATTT
CCCTTCCTTCTATGCAGTGCAAGTTTGCCGCGAGGTAGTGTATTTTAGTT
GTTCGCCAGCGTGGACACTGCTGTCTCCTCATCAACAACACTGCTTGCTC
TGTAGTAAATACCTCCCCGGCCAGTTTGTGGGTGATAGTGAGTTTAACGG
TCCGTTGATCGGGGGTAGAAAAGAGAATGTAATGTTGAGAAACTTGAAAA
TTGGGGGTATGTATTTGAATTTGTTCATCATTGTGTTTGCAAATGCGGGT
CAACCGAAGCCACGGCCGAAACGCACGGCAACTCCGCAGTCGAACATCGC
ATCTGATGCGCACTTTTATGAGTACTATATAGTGCTGTCTCTGAGGGCTC
TACGCCTATACTAATTTCACTGTCCTACCCGCCAGTATTGTACATACTGC
AACATGTATTGATCGAGGGTAGACCATGATCCTTAGTTAAAACCGAAGTA
CGTAAAACAATTGAAGTTTGAAATTGTACAGTACTGTCAGTACAAAGTAC
CTGCGGGCCAATTGAAGTCATGACCGAAACAAAAATTAAATACTGCTGCC
TGGACTGTCTGTACAGCGACTGTACTCACTCTCTGTTGGTCACACGTGAT
ATCCTGCATTCGTATAGAAAACATATATTCCTCAAAACATTTTACAATGT
GTTGGTCACCGAGTCTTTCGTGTCAGTACAATACGGAAGAAAGAGATCCG
CCTGCAATTGCGCAAGGCTGGAGAAACCGCAACGAACAGAAGCGTGCATG
AATTAAAAGTAAATGTACTACTCTGCATCTGATGCCTGATACCATACCAC
GCGTACTAAAAAAAAACACCCAGACACCATCGGGTCAAAGTCTGATGAAT
CAGAATTGTCACTTGACCGTCGAGTATCTCTACTCGGTTGGTAGTACAAA
GCAAGCGATCAATTCGTTGTTAGTATGGTGGTCCTCAACTTTTTTGCCGA
GCTTTCGCTTGCATTATTGCCACGCATATTTGTGTTTTGCACATGATGCT
CTCGTTGAATATTGCTCACTTGTTCGCGAGCGCATGCATGCATACATACA
TACATAATTTCCACTGTATAACCAACGGCATACCTCTCAATTCAGGATGA
GCTCAAAGTGACCATCGATGGCATCCGCTGGAGATTATCCAACCAAACCC
GAGGGCACGCTGCTCCCGCTGATGTTGAAGAACTCCCAACATTTACAGTG
GGTGACGTTTGTCTTGCCCCGCGTGTTTTTGACCGGCGGCGAGCGAGGGC
AATCGTGGAAAAAGTTGACAGCGATAAGGGCACCTGCCTGGTGACCTGGG
TGTACCCCCGGCAGAAAGGGGAACTCCCCTGCCGCTACTGGAAGGAGGTG
GGCAAACAGTTCATGTGTATATCACGTACGCAGGGTGCTGGTTGCTGTGC
GATGCCGATACAAAATAACATGTTTCTCTTGAAGTTGAAAGAGGAACCCT
TGAACCTTGAATGTTTGCGTCTTATGCGTCTCCCATGTGTGAAGAATGCA
CCGTTGCTATATTGTGTATAGACGCTTCATGAACAAAACTAAATGTACAC
GCACTGCATGGCGAACGTATAGAGTAGTACATACGGTTGAACAGGACGAG
CGCACCAACATCACCAACATCTCTTCTTGCTCCACACCGCGGAAGGGCCT
ACCTCTCTTCGGTACAAAACATTAAACTTGCAGTCTGACTTTATAGTAAT
ATGCCCTCGAACCCAAACCACCACGCCCATCGGACTATCTCGTGGACCAA
AATAAGGGAAGCTGTAAATTCTCCGGTCCGAACTGCTCGTTCTCCCACGG
GGTTGAACTCTCGCTGGCGGACCTCCTTCCTGACAAGAATCAACTCGGGC
TGAAACCAGCGACAGCAACAGCTGGCAACTCGATGGCGGTGACATCGAGC
AAGAGCAAAGCCCCGACGTCTGAGACAAATGAAGCTGCCGAATGGCTGAG
GAGCTTAGACGCCGGATCACGGGTGCTCGCTCGGTACCATGATCGGGTGT
GGTACAAAGCCGTAGTTTCAGAGAGCACAGCAGCAGCAGCAGCGGCTGCA
GCAGGAGACGGATCGCTATGCGTACGTTTCGATGGTTTCGAAGACGAAGG
ACCCGTGTGCATCCCGGCAGACACCTGCAACTTGGCGCCGCTCGGGGAGA
GCGATAGCAGCACGGCAGGATCGCGAGCAGAGAAAGATAATGATCGAATT
GCACCGGTATCGGCTGCTGCTGAAGACAGTGGGGAGGACAATAGTGATCT
AGAAGATGCTTGGGCCGATGCGCCTGACCTCTTAGGGCCGGAGGAGGTAT
TCTTCATGGAGAGGATCTTGGGAGGCCGAAAGGCGAAGGCGGTGGTGGAG
GGGAGCCGTCAGGGTAAGGCGGGCGGAGGAGGGGGTCAAGGTTTCGAGGA
AGGAGGGGACGGGGCTCCGCGCGACGAAGTGTACGTGGTCGGGGACTGGG
AACAGCATACTAAGGGCTTCGGATCGCGCATGATGGCCCGCATGGGATAT
AGGCGTGGCGAGGGACTTGGTAAGGCGAAACAGGTAGGAGAGAGAGGGAG
GGGGAAAGTGTACAGAAAATAATAATACTGCTGGTATGTATGTAGACTAC
TACTGCACACTAGTTTATAGTCGTGTTGAAATTTTTTCGAGTTCAGTAAT
CAGGTCGCAAAGCGCCCGTGCAACCGGGAAATGGTACGTTACAATAGCTG
TGTTTTGCTTCTGCTGATGATATAGACGTGCTTGCACACCGGCCTGTCAT
GACAACCGTGTACCATGCTTTGCTATTGCGTTGAAGGTATAGCTAGATCC
CTCGTACGTAGTTGTACGGTTCGTGTATTTTATGCGGCTTTCGATCAAGT
GACCCTGCGCTCGACAGGCAGCGTCAGGCACCATAGGGGAGGTTAAAATA
TATTTTTCGTTTGATCTATACTCTCTAGTGGACATCCTTTTAATTCCACC
GGTGAGCTTCAGTATCCATTTACACGTTGGGGATCTCGGTGCGTTTCGGC
GTCGCGTAGAGGATGCCAGCTTTTTCTAGCCTGTCGATGCGGTAACGATG
TTGTGAGTTGTTTCATAGTCGATACAAAGGTGCATAAAACACACTGGAGG
CAAAGACCGACACATTGTGGTGCGGCAGAGGAACTGTGATGTACAGTGCA
AAAACCTTGGTAAACGGTCATTCGAAATTTCCTCTGTGTAGGATATAGGA
CTTGCAACATTTTTTTCTCCATGAATTGTCTTCAAACCAAATTTTCCTTG
CTGACACACCAAGTCCCTGTTTCCCCACTCCCCCGCCGTCCACCAAATTG
TTTGTGTGTTCTGTCGAAAATCTCTCGGGGGGAATCGTTGATGGCATCTA
CCTTCGATCACCACGGTCGTTTCGCTCAATGAATACATCGCATACCCACC
TGTCCTTCCGAGGACGCGTGGTGAACGGTCTAATAACTACGGGATCCAAA
ACATGAATACATCCTCCATCCCCTACCTACAACAGGGAATCGCTAGGCCG
GTGACGATACGTGTGCTACCGGAGCGTTGTTCCTTGGACCACCTGCGAGG
CGAAGACGACATTCACCCCAAAGCCAATTCTCGCGGCGGCCCCCGACGAA
AGAAAAAATCGAAAAACGGGTCTCCCTCGGCCGTAGCCACCGCCGCCGCC
AGGGACGAGCCGCAAAAGGCCATGTTCGACTTCTTGAATGTGACCATTCA
TGCCTCTGCCAAGGGCAGTGGAGAAGGGGGACAAGGTGGCGGGCGGGCTT
CGGGTTCGTCGGCTAATAGTGTAAACTTTCTTTCATCTTCCAGCAGTCAA
ATTGGCGGTCGGTCGAGTCTCGCTAACAGGCGACCGATTTTCGATCTCAG
GAAAAAACATGCCGCGCACCCCGACTCGGCAGCAGCGAAAAATGGGGGGA
AGGCGGCGGGAGGAGGAGGAGGATCGTCCTCGACGGGTAGAGTCGCCGAT
AAAATGACCAAATCAGAGCTCAGGGCGCACCTTGTAGGAGCGCGCGAAGC
GGAAACGGCGTTGGCGGCAAAAATAGTGCGTCTGGAAGAAACGGTAACTC
GAAATTCGGAGCGAGATCCTCGTGTGGCGGCTCAAGCACGACAGAAGCTG
GAGGAGGTTCGGGCGCAGGCGCGGGAGGTCAGGGCTAGTCGGGAAAAAGC
GGAGCGGATTCTCGGAGATAGAGCGGACAGGGGTAAAGGCGGTGGCAAGG
GAAGACTGTTCGCTTTCTGATTGGTGGTTCTCTCTTATCGAAGCATAAAC
CATACTATACTAAATAAATAGTACGGCGGTTGGCATATTGCAAGAAATTA
ATAACTCTATGTATGTATGACGACGGCAAGTTTAGCGTTTTTTTGTAGGG
AATAGTACATTCTCGATTCGTGGTGGATACCGATACCGACGTCACGGGTA
CCGTGGTGCATGGATAACGTTGCACACCTCGAATAAAAGTTGATGAAGGT
CAATGAAAGTCGACCTTAATTTTTTTTTTATTTAGCTCCAAAAATGCTTG
GCGCTTTCGCAAACCCGTTTGAATCGATAGAAATTGGGGTCCGTCACGCG
TTCGTGAAGTGTTCGATTCTGGAATATGAGCACATATCCTCACATTTTCT
ACTTTTCAGCATGAAGGCTGGCTAAATAAAGATTGAAGATTCTATGAAGA
ACAGCATATTGGTGAAATGAGGAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2909:14337..19512+

>mRNA_H-paniculata_contig2909.7932.1 ID=mRNA_H-paniculata_contig2909.7932.1|Name=mRNA_H-paniculata_contig2909.7932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3780bp|location=Sequence derived from alignment at H-paniculata_contig2909:14337..19512+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGAGATAACGAGGATGCTCTGAAGGAACAGCTGGAGTCGCTTGA
AGGTCAACTTAGCCAGCTTACAGCTCTGCTAACCCGCGATGTTGTTGACT
CGCATTCTCCCTTGGTCCAGCTACAGATGGTGGGAGATAACGAGGATGCT
CTGAAGGAACAGCTGGAGTCGCTTGAAGGTCAACTTAGCCAGCTTACAGC
TCTGCTAACCCGCGATGTTGTTGACTCGCATTCTCCCTTGGTCCAGCTAC
AGGATGAGCTCAAAGTGACCATCGATGGCATCCGCTGGAGATTATCCAAC
CAAACCCGAGGGCACGCTGCTCCCGCTGATGTTGAAGAACTCCCAACATT
TACAGTGGGTGACGTTTGTCTTGCCCCGCGTGTTTTTGACCGGCGGCGAG
CGAGGGCAATCGTGGAAAAAGTTGACAGCGATAAGGGCACCTGCCTGGTG
ACCTGGGTGTACCCCCGGCAGAAAGGGGAACTCCCCTGCCGCTACTGGAA
GGAGGATGAGCTCAAAGTGACCATCGATGGCATCCGCTGGAGATTATCCA
ACCAAACCCGAGGGCACGCTGCTCCCGCTGATGTTGAAGAACTCCCAACA
TTTACAGTGGGTGACGTTTGTCTTGCCCCGCGTGTTTTTGACCGGCGGCG
AGCGAGGGCAATCGTGGAAAAAGTTGACAGCGATAAGGGCACCTGCCTGG
TGACCTGGGTGTACCCCCGGCAGAAAGGGGAACTCCCCTGCCGCTACTGG
AAGGAGGGAAGCTGTAAATTCTCCGGTCCGAACTGCTCGTTCTCCCACGG
GGTTGAACTCTCGCTGGCGGACCTCCTTCCTGACAAGAATCAACTCGGGC
TGAAACCAGCGACAGCAACAGCTGGCAACTCGATGGCGGTGACATCGAGC
AAGAGCAAAGCCCCGACGTCTGAGACAAATGAAGCTGCCGAATGGCTGAG
GAGCTTAGACGCCGGATCACGGGTGCTCGCTCGGTACCATGATCGGGTGT
GGTACAAAGCCGTAGTTTCAGAGAGCACAGCAGCAGCAGCAGCGGCTGCA
GCAGGAGACGGATCGCTATGCGTACGTTTCGATGGTTTCGAAGACGAAGG
ACCCGTGTGCATCCCGGCAGACACCTGCAACTTGGCGCCGCTCGGGGAGA
GCGATAGCAGCACGGCAGGATCGCGAGCAGAGAAAGATAATGATCGAATT
GCACCGGTATCGGCTGCTGCTGAAGACAGTGGGGAGGACAATAGTGATCT
AGAAGATGCTTGGGCCGATGCGCCTGACCTCTTAGGGCCGGAGGAGGTAT
TCTTCATGGAGAGGATCTTGGGAGGCCGAAAGGCGAAGGCGGTGGTGGAG
GGGAGCCGTCAGGGTAAGGCGGGCGGAGGAGGGGGTCAAGGTTTCGAGGA
AGGAGGGGACGGGGCTCCGCGCGACGAAGTGTACGTGGTCGGGGACTGGG
AACAGCATACTAAGGGCTTCGGATCGCGCATGATGGCCCGCATGGGATAT
AGGCGTGGCGAGGGACTTGGTAAGGCGAAACAGGGAAGCTGTAAATTCTC
CGGTCCGAACTGCTCGTTCTCCCACGGGGTTGAACTCTCGCTGGCGGACC
TCCTTCCTGACAAGAATCAACTCGGGCTGAAACCAGCGACAGCAACAGCT
GGCAACTCGATGGCGGTGACATCGAGCAAGAGCAAAGCCCCGACGTCTGA
GACAAATGAAGCTGCCGAATGGCTGAGGAGCTTAGACGCCGGATCACGGG
TGCTCGCTCGGTACCATGATCGGGTGTGGTACAAAGCCGTAGTTTCAGAG
AGCACAGCAGCAGCAGCAGCGGCTGCAGCAGGAGACGGATCGCTATGCGT
ACGTTTCGATGGTTTCGAAGACGAAGGACCCGTGTGCATCCCGGCAGACA
CCTGCAACTTGGCGCCGCTCGGGGAGAGCGATAGCAGCACGGCAGGATCG
CGAGCAGAGAAAGATAATGATCGAATTGCACCGGTATCGGCTGCTGCTGA
AGACAGTGGGGAGGACAATAGTGATCTAGAAGATGCTTGGGCCGATGCGC
CTGACCTCTTAGGGCCGGAGGAGGTATTCTTCATGGAGAGGATCTTGGGA
GGCCGAAAGGCGAAGGCGGTGGTGGAGGGGAGCCGTCAGGGTAAGGCGGG
CGGAGGAGGGGGTCAAGGTTTCGAGGAAGGAGGGGACGGGGCTCCGCGCG
ACGAAGTGTACGTGGTCGGGGACTGGGAACAGCATACTAAGGGCTTCGGA
TCGCGCATGATGGCCCGCATGGGATATAGGCGTGGCGAGGGACTTGGTAA
GGCGAAACAGGGAATCGCTAGGCCGGTGACGATACGTGTGCTACCGGAGC
GTTGTTCCTTGGACCACCTGCGAGGCGAAGACGACATTCACCCCAAAGCC
AATTCTCGCGGCGGCCCCCGACGAAAGAAAAAATCGAAAAACGGGTCTCC
CTCGGCCGTAGCCACCGCCGCCGCCAGGGACGAGCCGCAAAAGGCCATGT
TCGACTTCTTGAATGTGACCATTCATGCCTCTGCCAAGGGCAGTGGAGAA
GGGGGACAAGGTGGCGGGCGGGCTTCGGGTTCGTCGGCTAATAGTGTAAA
CTTTCTTTCATCTTCCAGCAGTCAAATTGGCGGTCGGTCGAGTCTCGCTA
ACAGGCGACCGATTTTCGATCTCAGGAAAAAACATGCCGCGCACCCCGAC
TCGGCAGCAGCGAAAAATGGGGGGAAGGCGGCGGGAGGAGGAGGAGGATC
GTCCTCGACGGGTAGAGTCGCCGATAAAATGACCAAATCAGAGCTCAGGG
CGCACCTTGTAGGAGCGCGCGAAGCGGAAACGGCGTTGGCGGCAAAAATA
GTGCGTCTGGAAGAAACGGTAACTCGAAATTCGGAGCGAGATCCTCGTGT
GGCGGCTCAAGCACGACAGAAGCTGGAGGAGGTTCGGGCGCAGGCGCGGG
AGGTCAGGGCTAGTCGGGAAAAAGCGGAGCGGATTCTCGGAGATAGAGCG
GACAGGGGTAAAGGCGGTGGCAAGGGAAGACTGTTCGCTTTCTGAGGAAT
CGCTAGGCCGGTGACGATACGTGTGCTACCGGAGCGTTGTTCCTTGGACC
ACCTGCGAGGCGAAGACGACATTCACCCCAAAGCCAATTCTCGCGGCGGC
CCCCGACGAAAGAAAAAATCGAAAAACGGGTCTCCCTCGGCCGTAGCCAC
CGCCGCCGCCAGGGACGAGCCGCAAAAGGCCATGTTCGACTTCTTGAATG
TGACCATTCATGCCTCTGCCAAGGGCAGTGGAGAAGGGGGACAAGGTGGC
GGGCGGGCTTCGGGTTCGTCGGCTAATAGTGTAAACTTTCTTTCATCTTC
CAGCAGTCAAATTGGCGGTCGGTCGAGTCTCGCTAACAGGCGACCGATTT
TCGATCTCAGGAAAAAACATGCCGCGCACCCCGACTCGGCAGCAGCGAAA
AATGGGGGGAAGGCGGCGGGAGGAGGAGGAGGATCGTCCTCGACGGGTAG
AGTCGCCGATAAAATGACCAAATCAGAGCTCAGGGCGCACCTTGTAGGAG
CGCGCGAAGCGGAAACGGCGTTGGCGGCAAAAATAGTGCGTCTGGAAGAA
ACGGTAACTCGAAATTCGGAGCGAGATCCTCGTGTGGCGGCTCAAGCACG
ACAGAAGCTGGAGGAGGTTCGGGCGCAGGCGCGGGAGGTCAGGGCTAGTC
GGGAAAAAGCGGAGCGGATTCTCGGAGATAGAGCGGACAGGGGTAAAGGC
GGTGGCAAGGGAAGACTGTTCGCTTTCTGA
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