mRNA_H-paniculata_contig2909.7931.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2909.7931.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE) HSP 1 Score: 195 bits (495), Expect = 7.640e-46 Identity = 478/1537 (31.10%), Postives = 625/1537 (40.66%), Query Frame = 2
Query: 1154 VEEAPEPGSLTGTIIIESDEVPACKADDTCEEIIEATLEDSLG--GDIVVTGVGMMTESR--DSGVRMLMMEPS-----------YLRGNRRFLQE--SGNDTETEIDFTTTPGDT-NLTRSEQAAEQVNLLAEDGLAELLGEMGLPADSNVTISNLLYTEVGT--PDSDDV-GLTEVAETKTRAINTVSVVGPVSRSAFLGFAVGLIILALLSALCLLCSCXXVGKVVTDKKKKKQAREGVLNFVKDPEGRQHSGTTAADFDLPSLPGSAKPSLTRARATRKLKWWHGGTLALDHKGSTMPTGGFGGEAPVPLPGFEDIPDDEVFAYPSKKEIAGMEVWPSPAEAEKTQELGDREHVA-LRSPRLATGDDFFCATRRQAEGPSLDPSARFGESLPSPHAGAASAPIP--LGDRRSIRSASTMSNFSMEVKHDNNDEPNPPGPKLSPAGAAELSERG----------GKKDDTHPWDRTGQDAAAAAXXXXXXXXEGATPAGGGSG--------HGVSTIVALEPEAEVSTKAFEEMQKRQKSPTDPAADVEPE-----SLQKIEAEKNDETP------LADFL------QDPTREQ-----TLATVVEEGSDIASTTTFDGMAAGVSTAEVAAYNA-------GAAQAVEAQQVESPSSTHRRQGTPM------------IKPTAGAAKAATALGAFADAAPYIRGGAKESYPSPAAGPQRYVARAQRPLLATDRSESSSSEHSTPSPGDPPSVLPPVAVPFGPLPLQPRINGSSGSATAXXXXXXXXXXXXXXXDSMRSNASSQESSQLLGIALISNVPSEDSF-DLSPESSPRRRRSPAPGGLEPVKETPSPPEGGIRRPSAQEEMHPEPSPFEETAAVXXXXXXXXXXXXXXXXXXXXD-------------SELTPVAVALGMDPL--------AYSPVREPPASPPAAYSPLV-VISTSPGDIGAAKISDLSSAGGVSTTPGISPP--RRPVPMRWESTSDAGSGFLGGSPRGDSGAIEVLSQGAAVHSGGNSSITVDAAASDVAVFGRQEALEGPEETAA---APAPSP---LSEPSLLEPRRQRSSESKRLAFRLGSRGSSG----RGSSVWD--------TEEDDQSMQDDFSPRSATPR-SDRTGRRESTLAENSSSASHVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGIWSTQPQARFGTPQR-QPRSAMARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPGDGDSGPSVVGRRAEAKSSLRVRDPGLLRIASSQSTEAPSSKSFSIMAPSPDGGGAYLFSRGESRAFGVRRQDSS-LSSYPSFGLSSSGVDSSNDQLGQGSGTGDAGGLFFAEDAGRRAATPDDKS----------DETWFEDKSSASTGVPV-----------------MPGNVTISDGGSLAKDANDPRVTGAPTGGGAVYQ----QAKFEREAAEVSALA-QQPVI-LAPS-TTGRA-PRTPSAAPGGGTLFTLVPAQVEHQRRAR 5272
V++ P+ GSL G+I I SDE P C CEE++E LE SLG G + VT V + + + D+G R+L+ LRG+R+ +E +GN TETEI++ ++P + NLT ++QAAEQ+N LAE G+A+LL EMGLP D+ V I + ++GT D++D + A R+I+T +A+LGFA L XX + KK ++ GV+ K E + +F+LP+ S R + + G + + GE + + +D +FAYP S ++ KTQ+ D A L +P +G+DFF AT+R A+ PS R + A A + DRR +A+ + EV P P AG G + H D A++ GA +G +G GV+ E ++ S D+E E +LQ+ +N E LADFL PT L TV+EEGS + F AE + +A+ QVE +S + + AG A LG + R AR RP+LATDRSESS SE S PS +P P + S + + S RS+ +S S L+G++LISN PS DS + SPESSPRR XXXXXXXXXXXX D S VA A G+ P+ AYSPVREP SPP AYSPL+ + +SP D AA + S P RR V ES GG+ R +GA V GG+SS VD ++S + G A P PS ++ S+ R Q R GS GS +G SVWD + +D SMQD +SP S+ S RT ST+A ++ S XXXXXXXXXXXXXXXXXXXX XXXXXXXXX GIW + Q +R QPR AEAKSSLRVRDPG+LR+ASS STEAPSSKS S++APSPDG GAYLFSRGESRAFG RRQ SS LSSYPSFGLSSSGV+SS + G G G AG F + +GR +A D+ S ++ ED A+T +P V S G S++ D +A+ AA +S +A +QP APS TTG+A P PS+APGGG LF L P VEHQRRAR
Sbjct: 579 VDDEPD-GSLIGSITIISDEAPECAGAGNCEEVVEDGLESSLGRNGTVNVTDVTVTSTAAAADAGRRVLLFVADGDVADDSSRNRLLRGSRQLQEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVEIGVTKFVQLGTITDDAEDWDSIFSAALADDRSIST---------AAYLGFA-----LXXXXXXXXXXXXXXXXMLCLSKKDSRRRNAGVVRLEKIEESTAINDDGDDEFELPTKRMSEIKEQRRGSSFMNRIPFFGSSAKMK-----------AGETDIEAGTTRRVAEDHIFAYPPHS---------SGGDSGKTQDAADASFPAPLGAP---SGNDFFYATQRFADPQVNSPSPRTSTGALATGAAAXXXXXXXXVADRRRPATAAAAPAHAGEVSEQ---WPLPISTTTVGAGGXXXXXXXXXXXXXXXXXGSMETKH--DVESDARASSLSPAGRAGSSGAINSGDAAGATTXXXXXXGVTXXXXXXXXXXXXXXXXTEQKRDDVS----LEDIEQEHAEFGALQREHEAENKEISARGRMALADFLLGTSDMTSPTSASGRIGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVXXXXXXXXXSSAEGTVIVQVEPAASVDSAPSSVVGXXXXXXXXXXXXXXIAGLTTEAR-LGXXXXXXXXXXXXXXXXXXXXXSSNAR--ARQNRPMLATDRSESSGSEQSAPSXXX---XXXXXXXXXXTIPRPPALLASGSGSMSYSMGSSGHPT------STRSSTTSSPGSNLIGVSLISNTPSADSILEPSPESSPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGDSSDMDIAESKDSPSSSAVSSPASVAAATGLPPVVVAVVNAPAYSPVREPSDSPPPAYSPLMGTLGSSPEDGAAADNTGXXXXXXXXXXXDASAPTARRLVLGGGESMISEAMSEAGGASRHTAGAAAVXXXAGLGSDGGDSS--VDFSSSAPVELKTPSSATGYAAAAGDGDRPVPSASLAVTPSSVGLQRLQXXXXXXXXHKRTGSEGSIQSLILQGPSVWDLGGGGGGDADVEDVSMQDTYSPPSSPGAISTRTA---STMA-SAVSXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXRTAADQARTGIWGRREQEDAELQRRRQPR-------------------------------------------------AEAKSSLRVRDPGMLRMASSVSTEAPSSKSISVVAPSPDGSGAYLFSRGESRAFGSRRQQSSSLSSYPSFGLSSSGVESSVEAGETGDGGG-AGMFFGGQHSGRSSAFSDNASSGNVSSLSPPEDHLDEDSVDAATAXXXXXXXXXXXXXXXXXPSSVPSQVGSSGGHSVSTDTGXXXXXXXXXXXXXXXXXXXXRAQEVPPAAAISTIAAEQPFFHQAPSNTTGQAAPSVPSSAPGGGNLFALQPNVVEHQRRAR 2000
BLAST of mRNA_H-paniculata_contig2909.7931.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.350e-21 Identity = 121/391 (30.95%), Postives = 185/391 (47.31%), Query Frame = 2
Query: 1154 VEEAPEPGSLTGTIIIESDEVPACKADDTCEEIIEATLEDSLG--GDIVVTGVGMMTESR--DSGVRMLMMEPS-----------YLRGNRRFLQE---SGNDTETEIDFTTTPGDT-NLTRSEQAAEQVNLLAEDGLAELLGEMGLPADSNVTISNLLYTEVGT--PDSDDV-GLTEVAETKTRAINTVSVVGPVSRSAFLGFAVGLIILALLSALCLLCSCXXVGKVVTDKKKKKQAREGVLNFVKDPEGRQHSGTTAADFDLPSLPGSAKPSLTRARATRKLKWWHGGTLALDHKGSTMPTGGFGGEAPVPLPGFEDIPDDEVFAYPSKKEIAGMEVWPSPAEAEKTQELGDREHVA-LRSPRLATGDDFFCATRRQAEGPSLDPSAR 2257
V++ P+ GSL G+I I SDE P C+ CEE++E LE SLG G + VT V + + + D+G R+L+ LRG+R+ +E +GN TETEI++ ++P + NLT ++QAAEQ+N LAE G+A+LL EMGLP D+ V + + ++GT D++D G+ A R+I+T +A+LGFA L XX + KK ++ GV+ K E + +F+LP+ S R + + G + + GE + + +D +FAYP S ++ KTQ+ D A L +P +G+DFF AT+R A+ PS R
Sbjct: 587 VDDEPD-GSLIGSITIISDEEPECEGAGNCEEVVEDGLESSLGRNGTVNVTDVTVTSTAAAADAGRRVLLFVADGDVADNSSRNRLLRGSRQLQEEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVELGVTKFVQLGTITDDAEDWDGIFSAALADDRSIST---------AAYLGFA-----LXXXXXXXXXXXXXXXXMLCISKKDSRRRDSGVVRLEKIEESTAINDDGNDEFELPTKRMSEIKEQRRGSSFMNKIPFFGTSSKMK-----------AGETDIEAGTTRRVAEDHIFAYPPHS---------SGGDSGKTQDAADASFPAPLGAP---SGNDFFYATQRFADPQVNSPSPR 939 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2909.7931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2909.7931.1 >prot_H-paniculata_contig2909.7931.1 ID=prot_H-paniculata_contig2909.7931.1|Name=mRNA_H-paniculata_contig2909.7931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1764bp MATTAPMITEAPLLFTPAPSAVTTTIAPSPVTTIAPSPVTTIAPSLVTTIback to top mRNA from alignment at H-paniculata_contig2909:2826..13745- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2909.7931.1 ID=mRNA_H-paniculata_contig2909.7931.1|Name=mRNA_H-paniculata_contig2909.7931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10920bp|location=Sequence derived from alignment at H-paniculata_contig2909:2826..13745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2909:2826..13745- >mRNA_H-paniculata_contig2909.7931.1 ID=mRNA_H-paniculata_contig2909.7931.1|Name=mRNA_H-paniculata_contig2909.7931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10584bp|location=Sequence derived from alignment at H-paniculata_contig2909:2826..13745- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |