mRNA_H-paniculata_contig29086.7929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29086.7929.1
Unique NamemRNA_H-paniculata_contig29086.7929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.770e-30
Identity = 67/81 (82.72%), Postives = 77/81 (95.06%), Query Frame = 1
Query:    7 RALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            RALR+LSRKVTV EVNEAVMARR+AS+KEQLQVE+EARA +ERDFL++S+A K RILYLEQWKAGA+ARLLRLQQRL+VSV
Sbjct:  653 RALRDLSRKVTVLEVNEAVMARRFASVKEQLQVEAEARAVSERDFLDMSTAGKTRILYLEQWKAGASARLLRLQQRLDVSV 733          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.980e-30
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 1
Query:    7 RALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            RALR+LSRKV+V EVNEAVMARR+ S+KEQLQVE+EARAA+ERDFLE+S+A K R+LYLEQWKAGA+ARLLRLQQRL+VSV
Sbjct: 1023 RALRDLSRKVSVLEVNEAVMARRFTSVKEQLQVEAEARAASERDFLEMSTAGKTRVLYLEQWKAGASARLLRLQQRLDVSV 1103          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A835Z5T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.060e-15
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    7 RALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVS 246
            R LREL+R+VTV+EVNE  +ARR+A+++EQL++ +EAR  AE D +E  +A+K RIL+LEQ +AGAA R+ RL   LE S
Sbjct:  225 RLLRELTRRVTVFEVNEQELARRHANMEEQLRLANEARERAEGDLIEAEAAAKTRILFLEQHRAGAAERVARLTAELERS 304          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A812W2G3_SYMMI (Cep290 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W2G3_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-12
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   13 LRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            ++E +RKVTVYEVNEAV++R++ +L EQ+  E   RA  E DF+E+    K RIL+LEQ+KA  + RL +L+  L+ SV
Sbjct:   82 IKEYTRKVTVYEVNEAVLSRKFMALSEQMAEEQSLRARVEADFVEMEGTLKRRILFLEQYKAICSPRLDKLETELQYSV 160          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A482STS1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STS1_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 2.780e-10
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   19 ELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLE 240
            EL+RKVT+YE NEA+++R+Y SL EQ   E + R   E DF E+ +  K RIL+LEQ+K  A  RL  +Q +L+
Sbjct:  688 ELTRKVTIYESNEAILSRKYISLSEQCDTEVKRRVQLEWDFAEMEATLKQRILFLEQYKLAAGGRLAFVQGKLD 761          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A7R9U7L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7L5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.300e-8
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   13 LRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVS 246
            L+E +R+ T+ EVNEAV+ARRY SL+ QL  E + R  AE +  E +   + RILYLEQWKA A   +     RLE S
Sbjct:  209 LKEQTRRCTILEVNEAVLARRYRSLESQLAQEKQRRKEAETELKEATIIWRHRILYLEQWKARAVGEIEVYVARLERS 286          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A7S1TUX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUX8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.120e-8
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 LRRALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVS 246
            L++ L+E +RK T+ EVNEAV+ARRY SL+ QL  E+  R  +E+   E +   + RILYLEQWKA A   +     RLE S
Sbjct:  664 LQKNLKEQTRKCTLLEVNEAVLARRYRSLEAQLAQEAVRRRESEKALKEATVLWRHRILYLEQWKARAVGEMEVYAARLERS 745          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A3R7G134_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G134_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-7
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 LRRALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            LR  + EL+RK+ VYEVNEA + R+Y  L  + +  +E     +R++ E+    K R+LYLE WK GA   + R+++ LE SV
Sbjct:  748 LRSNVIELTRKIAVYEVNEARLKRKYQQLHNEWRSSTEHNKLLQREWSEMEKTLKYRVLYLETWKQGADEMMERMEKTLEKSV 830          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A3F2RLU5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLU5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.000e-7
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 LRRALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            LR  + EL+RK+ VYEVNEA + R+Y  L  + +  +E     +R++ E+    K R+LYLE WK GA   + R+++ LE SV
Sbjct:   14 LRSDVIELTRKIAVYEVNEARLKRKYQQLHNEWRSSTEHNKLLQREWGEMEKTLKYRVLYLETWKQGADEMMERMEKTLEKSV 96          
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Match: A0A485LPE4_9STRA (Aste57867_24043 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPE4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.130e-7
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   19 ELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEISSASKMRILYLEQWKAGAAARLLRLQQRLEVSV 249
            + +RK+ ++EVN+A +AR+Y  + ++ Q E   R A E + L++  A K RI YLE WK GA  R+  +QQ L  S+
Sbjct:  486 DTTRKLALFEVNQARLARQYNVMMDEKQTEYTRRIAIEDELLDVEKALKGRIQYLESWKQGATRRIKSMQQALHQSI 562          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29086.7929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KTB3_9PHAE3.770e-3082.72Reverse transcriptase domain-containing protein n=... [more]
D8LI68_ECTSI6.980e-3081.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z5T3_9STRA7.060e-1556.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812W2G3_SYMMI1.220e-1249.37Cep290 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A482STS1_9ARCH2.780e-1048.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9U7L5_9STRA1.300e-848.72Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TUX8_9STRA4.120e-847.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A3R7G134_9STRA1.080e-740.96Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RLU5_9STRA2.000e-740.96Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A485LPE4_9STRA5.130e-740.26Aste57867_24043 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29086contigH-paniculata_contig29086:1541..2302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.8e-08
Seed eggNOG ortholog36331.EPrPI00000017529
KEGG koko:K16533
Hectar predicted targeting categoryother localisation
EggNOG OGs1MD2B@121069,29FR3@1,2RNWW@2759
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.1634061-CDS-H-paniculata_contig29086:1540..16871622929888.1634061-CDS-H-paniculata_contig29086:1540..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29086 1541..1687 -
1691481056.007644-CDS-H-paniculata_contig29086:1540..16871691481056.007644-CDS-H-paniculata_contig29086:1540..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29086 1541..1687 -
1622929888.1800978-CDS-H-paniculata_contig29086:2200..23021622929888.1800978-CDS-H-paniculata_contig29086:2200..2302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29086 2201..2302 -
1691481056.0248275-CDS-H-paniculata_contig29086:2200..23021691481056.0248275-CDS-H-paniculata_contig29086:2200..2302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29086 2201..2302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29086.7929.1prot_H-paniculata_contig29086.7929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29086 1541..2302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29086.7929.1

>prot_H-paniculata_contig29086.7929.1 ID=prot_H-paniculata_contig29086.7929.1|Name=mRNA_H-paniculata_contig29086.7929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
LRRALRELSRKVTVYEVNEAVMARRYASLKEQLQVESEARAAAERDFLEI
SSASKMRILYLEQWKAGAAARLLRLQQRLEVSV
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mRNA from alignment at H-paniculata_contig29086:1541..2302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29086.7929.1 ID=mRNA_H-paniculata_contig29086.7929.1|Name=mRNA_H-paniculata_contig29086.7929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig29086:1541..2302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGCAGAGCGCTTCGAGAGCTTAGTCGCAAAGTGACGGTGTACGAAGT GAACGAGGCCGTTATGGCGAGGCGATACGCTTCCCTCAAAGAACAACTTC AGGTTTGAGATTCGAGTTAAATATGCCGGATGGGTGAATGGACAGATAGG TGGATACATATAGCTGTAAAGCTGGAGGTCCAGGGGTATATTGATAAACA GATGCGGATATAAAGGCTGGCTATGCTACTCAAGGTCTCCGTCGCGCGAT ATGGCCGCACAGGTCTCTCTTGGATGTCTCGAGTGCAAGCATAAGAGACG ATAGGGTCTCATGTGCACCAAAATATTTTGGGGGTAGTTTTAGGTTTTGG GGTAGTGTTCTTCGCACCAGAATTAAAAAATATGGTGAAGTTGGCGAGCA TAAAAATTTGAGCCCCCAGACGAACACCAAGATTTGGAATATAATAGTAC ATTATATCTAGGTATAGATGTCTTCGCCTGAGGCTCCAGCATGATGAAGC ATGTTTATTTATTTTATATTCTCCCGGCGAACTATAATGGCTATAATACG ACTGCCCCGAATAATGATGCATGGTCGATTGAAAGACAGGGAAACACTTC ATTCTACTTGTGCAGGTGGAGTCGGAAGCGCGCGCAGCGGCTGAGAGAGA TTTCTTGGAAATTTCTTCAGCCAGCAAGATGCGAATCTTGTACCTGGAGC AGTGGAAGGCCGGTGCAGCGGCGAGGCTGCTCCGTCTTCAGCAGAGGCTC GAAGTTAGCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig29086:1541..2302-

>mRNA_H-paniculata_contig29086.7929.1 ID=mRNA_H-paniculata_contig29086.7929.1|Name=mRNA_H-paniculata_contig29086.7929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig29086:1541..2302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGCAGAGCGCTTCGAGAGCTTAGTCGCAAAGTGACGGTGTACGAAGT
GAACGAGGCCGTTATGGCGAGGCGATACGCTTCCCTCAAAGAACAACTTC
AGCTGCGCAGAGCGCTTCGAGAGCTTAGTCGCAAAGTGACGGTGTACGAA
GTGAACGAGGCCGTTATGGCGAGGCGATACGCTTCCCTCAAAGAACAACT
TCAGGTGGAGTCGGAAGCGCGCGCAGCGGCTGAGAGAGATTTCTTGGAAA
TTTCTTCAGCCAGCAAGATGCGAATCTTGTACCTGGAGCAGTGGAAGGCC
GGTGCAGCGGCGAGGCTGCTCCGTCTTCAGCAGAGGCTCGAAGTTAGCGT
AGTGGAGTCGGAAGCGCGCGCAGCGGCTGAGAGAGATTTCTTGGAAATTT
CTTCAGCCAGCAAGATGCGAATCTTGTACCTGGAGCAGTGGAAGGCCGGT
GCAGCGGCGAGGCTGCTCCGTCTTCAGCAGAGGCTCGAAGTTAGCGTA
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