mRNA_H-paniculata_contig29081.7928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29081.7928.1
Unique NamemRNA_H-paniculata_contig29081.7928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29081.7928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29081contigH-paniculata_contig29081:45..1023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29081.7928.1prot_H-paniculata_contig29081.7928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29081 71..1023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.0693834-UTR-H-paniculata_contig29081:44..701622929888.0693834-UTR-H-paniculata_contig29081:44..70Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29081 45..70 +
1691481055.964934-UTR-H-paniculata_contig29081:44..701691481055.964934-UTR-H-paniculata_contig29081:44..70Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29081 45..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.0868433-CDS-H-paniculata_contig29081:70..921622929888.0868433-CDS-H-paniculata_contig29081:70..92Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 71..92 +
1691481055.9733918-CDS-H-paniculata_contig29081:70..921691481055.9733918-CDS-H-paniculata_contig29081:70..92Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 71..92 +
1622929888.1089406-CDS-H-paniculata_contig29081:395..4711622929888.1089406-CDS-H-paniculata_contig29081:395..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 396..471 +
1691481055.9809282-CDS-H-paniculata_contig29081:395..4711691481055.9809282-CDS-H-paniculata_contig29081:395..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 396..471 +
1622929888.1270444-CDS-H-paniculata_contig29081:845..10231622929888.1270444-CDS-H-paniculata_contig29081:845..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 846..1023 +
1691481055.9913218-CDS-H-paniculata_contig29081:845..10231691481055.9913218-CDS-H-paniculata_contig29081:845..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29081 846..1023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29081.7928.1

>prot_H-paniculata_contig29081.7928.1 ID=prot_H-paniculata_contig29081.7928.1|Name=mRNA_H-paniculata_contig29081.7928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MTSPSPPEPFPEISPHRRGYCVRHHAGPARMPSGTSSTPSLSSTGDRKRA
NVGPKADGHRTASEVGDGLQSATPLTATPATASSTSMTSPSP
back to top

mRNA from alignment at H-paniculata_contig29081:45..1023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29081.7928.1 ID=mRNA_H-paniculata_contig29081.7928.1|Name=mRNA_H-paniculata_contig29081.7928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=979bp|location=Sequence derived from alignment at H-paniculata_contig29081:45..1023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCCCGCCAGGT
GCGTACGGAACCGCCAGCGCTACTCGCAATCGAAGCGTCAACAACGTGCA
GCATATCCCAAACAGAGATGTAGTAGCAGTGTCGGGCCATCGTCGTGCAG
TGGCTCTAGGCGTTTGCGCTCCGACGTCGTTGCATATATATACACGTAGA
AACGTCGCACACACTCACGATATGCCTCAAGTCGTTATGATTAATAGTCG
TACCCTCGCCTTCCCCCCCCCGCCTCGCCGCCCCGCCCCCGTCGTCTCGC
CCGTCTTTGGACAACTGACACGCCTCCTGACACGCCTCCACCTTTCTTTA
GAGCCCTTCCCCGAGATCTCGCCACACCGCCGCGGATACTGCGTGCGGCA
TCACGCCGGCCCTGCACGGATGCCTAGGTAAGGTTACTCGGTGATGTAAG
GGCGGTGTGGTATAAGGCGAATTTCCCGCTCGGACTCCGATACATGCTGG
TTCGTCGTGTCGCGTTCGAGCGGTGCCGTCTAGTAGGGCGAAGATAGTGA
CAAATGCAGTATCTCTCCGACGAACGAACAAGAGAGAGTGAACCCAATAT
CCTGTGTGGATTTACCGTCCGGGCGTCAGGTGGTAGGGAGTCCCGAAGAG
AGACAGGGCAGAACAATATAGGACGGAAATCGCAGATACCGTGTGTCCCG
ATAAATTCCCGGACGCAAGACCCAACGTCACCCGTATACCCCCGCTCTCG
TTGCCGTTCGATTTTCCGTAATCTTTTCATACACTCGGTGTCCGACGTCA
GCGGGACCTCGTCGACTCCGAGTCTCTCGTCGACGGGGGACCGCAAGCGG
GCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCGG
TGACGGCCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCGA
GCAGCACCTCCATGACCTCTCCATCCCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig29081:45..1023+

>mRNA_H-paniculata_contig29081.7928.1 ID=mRNA_H-paniculata_contig29081.7928.1|Name=mRNA_H-paniculata_contig29081.7928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig29081:45..1023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTCTCCATCCCCGCCAGATGACCTCTCCATCCCCGCCAGAGCCCT
TCCCCGAGATCTCGCCACACCGCCGCGGATACTGCGTGCGGCATCACGCC
GGCCCTGCACGGATGCCTAGAGCCCTTCCCCGAGATCTCGCCACACCGCC
GCGGATACTGCGTGCGGCATCACGCCGGCCCTGCACGGATGCCTAGCGGG
ACCTCGTCGACTCCGAGTCTCTCGTCGACGGGGGACCGCAAGCGGGCAAA
TGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCGGTGACG
GCCTCCAGTCGGCGACTCCTCTCACCGCCACGCCGGCAACCGCGAGCAGC
ACCTCCATGACCTCTCCATCCCCGCGGGACCTCGTCGACTCCGAGTCTCT
CGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCAAGGCCGACGGT
CACCGGACGGCGAGCGAGGTCGGTGACGGCCTCCAGTCGGCGACTCCTCT
CACCGCCACGCCGGCAACCGCGAGCAGCACCTCCATGACCTCTCCATCCC
CG
back to top