prot_H-paniculata_contig29064.7924.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig29064.7924.1
Unique Nameprot_H-paniculata_contig29064.7924.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length151
Homology
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BLAST of mRNA_H-paniculata_contig29064.7924.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.640e-18
Identity = 79/151 (52.32%), Postives = 92/151 (60.93%), Query Frame = 0 
Query:    1 QEALSKALALDGTDVSGRVIQVQRSLPRSSRPAKEAAGSAQTAARDSEPAGAMVGGNGVDKDSNLETPTXXXXXXXXXXXXXXXXGKAREGAGGEGVMGAGGVKWPVHPTTVFVKGLGSGATSEGLKEAFLGVGRVVGARVVEDKKTHKKK 151
            +EAL+KALALDGTD+ GR + VQRSLPR SR  K            S                      XXXXXXXXXXXXXXXX        GE V+ A G+KWP HPTTVFV+GLG  ATS+ L+EAF+GVG +V ARVVEDK+T + K
Sbjct:  750 EEALAKALALDGTDMDGRTLSVQRSLPRGSRSVKGG----------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEVVVAASGIKWPAHPTTVFVRGLGLSATSQDLREAFVGVGPMVEARVVEDKRTRETK 890
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29064.7924.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI1.640e-1852.32Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 112..150
e-value: 2.7E-5
score: 23.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..151
e-value: 3.2E-8
score: 35.6
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29064contigH-paniculata_contig29064:769..2936 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29064.7924.1mRNA_H-paniculata_contig29064.7924.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig29064 769..2936 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig29064.7924.1 ID=prot_H-paniculata_contig29064.7924.1|Name=mRNA_H-paniculata_contig29064.7924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
QEALSKALALDGTDVSGRVIQVQRSLPRSSRPAKEAAGSAQTAARDSEPA
GAMVGGNGVDKDSNLETPTTTTTTTTSKKGKSKKRGKAREGAGGEGVMGA
GGVKWPVHPTTVFVKGLGSGATSEGLKEAFLGVGRVVGARVVEDKKTHKK
K
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf