mRNA_H-paniculata_contig2906.7923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2906.7923.1
Unique NamemRNA_H-paniculata_contig2906.7923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: A0A6H5KZA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.560e-35
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 2 
Query:  485 VTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVRK 742
            V VEWE GQ+F+ + R +AS++L+ L+NRYMHGPIPMKVE CR EMLRAC+SP+Q+LRQGSF++TVVGLR FGRRTHEDEWDEV++
Sbjct:  176 VDVEWEGGQLFLVLRRAVASDFLIDLINRYMHGPIPMKVESCRVEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDEVQR 261
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BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 6.750e-35
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 2 
Query:  485 VTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDE 733
            V VEWE GQ+F+ + R +AS++L+ LVNRYMHGPIPMKVE CRAEMLRAC+SP+Q+LRQGSF++TVVGLR FGRRTHEDEWDE
Sbjct:  183 VDVEWEGGQLFLVLRRAVASDFLINLVNRYMHGPIPMKVESCRAEMLRACLSPSQILRQGSFQATVVGLRTFGRRTHEDEWDE 265
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BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Match: A0A836C889_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C889_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.350e-12
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:  485 VTVEWEDGQMF---VTVHRPIASEWLVGLVNRYMHGPIPMKVERCRAEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVR 739
            V++ W+D   +   + + +  ASE  + L+N YMHGPIP KVE    + +R  + P    R+GS  +   GLR+ GRRTHEDEWDE R
Sbjct:   80 VSLLWDDDSSWWPVLAMDKCEASERAINLINHYMHGPIPTKVEAISFDTVRIPLLPLAAWRRGSIAAQATGLRSTGRRTHEDEWDEAR 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2906.7923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZA2_9PHAE3.560e-3572.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C6_ECTSI6.750e-3575.90C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836C889_9STRA2.350e-1243.18C2 domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2906contigH-paniculata_contig2906:14661..18424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size745
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2906.7923.1prot_H-paniculata_contig2906.7923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2906 14674..18424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.222312-UTR-H-paniculata_contig2906:14660..146731622929887.222312-UTR-H-paniculata_contig2906:14660..14673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2906 14661..14673 +
1691481055.4885008-UTR-H-paniculata_contig2906:14660..146731691481055.4885008-UTR-H-paniculata_contig2906:14660..14673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2906 14661..14673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.2370362-CDS-H-paniculata_contig2906:14673..152301622929887.2370362-CDS-H-paniculata_contig2906:14673..15230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2906 14674..15230 +
1691481055.5020494-CDS-H-paniculata_contig2906:14673..152301691481055.5020494-CDS-H-paniculata_contig2906:14673..15230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2906 14674..15230 +
1622929887.2518096-CDS-H-paniculata_contig2906:18249..184241622929887.2518096-CDS-H-paniculata_contig2906:18249..18424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2906 18250..18424 +
1691481055.5116825-CDS-H-paniculata_contig2906:18249..184241691481055.5116825-CDS-H-paniculata_contig2906:18249..18424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2906 18250..18424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2906.7923.1

>prot_H-paniculata_contig2906.7923.1 ID=prot_H-paniculata_contig2906.7923.1|Name=mRNA_H-paniculata_contig2906.7923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MPPPVPVSSTTIAVAGWVAATSTAMVFAVVLSALRGGVAAVLLTVTFSAP
TVLVIFLLCLWGATKYCPGLLGIVVQVLVVEVIRLSGALADDDEEEEDES
WSRMKGEERAARLGKEWAEGRLSECRHERWRKQQQGQEEEETRRRRQGRR
RRRRRRRVTVEWEDGQMFVTVHRPIASEWLVGLVNRYMHGPIPMKVERCR
AEMLRACVSPAQLLRQGSFKSTVVGLRAFGRRTHEDEWDEVRK*
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mRNA from alignment at H-paniculata_contig2906:14661..18424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2906.7923.1 ID=mRNA_H-paniculata_contig2906.7923.1|Name=mRNA_H-paniculata_contig2906.7923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3764bp|location=Sequence derived from alignment at H-paniculata_contig2906:14661..18424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCACCGGGGTTAATGCCGCCGCCGGTGCCCGTCTCCTCCACGACTATTG
CTGTAGCCGGATGGGTCGCTGCTACTTCGACAGCTATGGTGTTCGCCGTC
GTGCTTTCCGCCCTTCGTGGCGGTGTCGCAGCTGTTCTACTTACCGTGAC
GTTCTCGGCGCCAACAGTGCTTGTTATATTCCTTCTCTGCCTGTGGGGCG
CGACGAAGTACTGCCCTGGCCTGCTGGGCATTGTCGTCCAGGTGCTAGTG
GTCGAAGTAATTCGATTAAGCGGAGCCTTGGCCGATGATGACGAAGAAGA
GGAAGACGAGAGCTGGAGCCGGATGAAAGGAGAAGAGAGAGCAGCTAGGC
TGGGAAAGGAATGGGCAGAAGGACGGCTGTCGGAGTGCCGACACGAGAGA
TGGCGTAAGCAGCAGCAAGGGCAGGAGGAGGAGGAGACTCGGCGGCGGCG
GCAAGGACGGCGCCGACGGCGGCGGCGCCGTCGTGTGACTGTGGAATGGG
AAGATGGCCAGATGTTCGTAACAGTTCATCGACCAATCGCGTCCGAATGG
CTGGTCGGCCTCGTGAATAGGTGCGTACGAGTCACTGGTTATATTACAGT
AGTTTGGAGTATCATCTTTGTTTCGGTTTGCACGGCAATGGTGATCGCTA
AACGATGCGTGGTGGTCGAGGATGCGTTGCTTCAGCGTTAGTGTGTGCTG
TACGGTTCTTGCTAGGGGAAGGTTGCATGGGTGCTGGTTCGACGCACGTG
CCCTTTGGTGATTTCTGCTGCAAATTTGTATATCTCCAAGGCGTCGCTCT
TCATGATGTATGGCTAGTTTGGTTGTGCAATTGACGAGGGTTTAATCGCT
GTCGGAACACTCTGATAGCCTACCGTTGAGGTCTAAGGAACCGGTTTCAC
TGTAGGTGTTTTTTAGAGCGACGCAATTACGCAGATATTTATCAAACGTT
GCGAAATATGATGCATTGTGTAGTGGTGACATTGTATGTAACATTTTCCC
CCGATTTCTGCTACGTCACCACCCAGCAATCGAATGAGCTAACCTTACCG
TATTATCGACCATTTGCGCGGCTTCAAATACGCCAAATGTACTCATGTTC
ACTCTGTGACCTCCTGCTAGAGAAGGGTTCTGCTTTGCTTCCTGTGGCGG
TTCTGTGGGTTGTGTTTTGTCGATTTATAGTTAGTTTGTTTTGTTGTGCT
CATACATGCGCCCGACGGTCAGAAATAGAACAAAAGACAATCAACAGAAC
GGTTATAGGCCGATTCTGAATATACGCAAAGCCAGCAAAAGTGCGGATAG
TTTGCATCTTTTTGGACTCGCGTAAGTACTGATTTCTGTAGGAAAGCCGA
CGACCTCCCACGCACGCTGTTGAAATTTATCCCAGAAACGGATGAGGTCA
GCCTAAGAAAACAGCGTGCCAACATGGACCGATTTGATTATTTTTTGTTG
TTTTTCCATGTTCCGCGCTAGTAGATTCTTGATGCCTATAGTTGCAGTGA
CTTGTACGGGCATTTTGTCATTATTTTAGTTCGTTTGGGTATCCGTATAC
GTACAAAAGCTGATGGCTTCCCACGCACGCTATTGAAAGATATATATGAA
ACAGATGAGGTTACCCGAAGAAAAGGGCGCATGAAAAAGAACTGCTGCGT
TTGCCCTTTTTGATTGTGCCAATTGGTCCCGCCTTGTGAGCTCCATCATT
GAAAAACTTTTGCTTGCCATTAAATCGAACGCTCAAAATTCGGGTAGACC
TTCCGTAACTAGTTCGTGCCAAAGCCCCAGTTGTGGCTTCATTGGTGCAG
TACCTGACGCTTGGGCGTTCACGATTGTTGCCAACACGCCAACCCTACAT
CGCCGTGAAGAGGAACTAATACATTGTCACCTTCTACAAAATAAGTAAAT
AAGACATGTACTGAACAAGAGCCGTTTTCTCGACAAATGCTCCGTCGCCG
ACAAAACTAGCGCGGCATGTTTCGCCTGCTCTGGTGCACCGCGCGTACAC
AATCGAGTCGCACGAATGCGAAATGGCCGCACCTTTGTCCGGTCCTCACT
GCCAACTCCCTTTCATACCTCAACCATTACATGCTTTGGTCACATAAGTT
ACGCAGGGGACAAAGAAGAGACCTCAGATTGCTGCACAATGATTGTATGC
GGTTTCCGCCAACGGTAAGCTCTAACATTATATCAACAATGGGATCATGC
CGAGAGGCAGATGTGTTGTACTAGTGAATGCATGTCATGTCAAAATATGT
CGCATCCGCCACGGAGATCTGTATGTGGAGAATCACAGTGGTCCTGCAAA
TCGGCGATTTTCCAGGCTTGGAAAATTGATCTGAAGATCATCCCAAAACC
CTTCGATGACCTGACACGTGCTCGCGTCGTAGCATATCACCATTGGACAG
TCGAATCCGCCGCACCGTAACGTTTCGAGTTTTGGTTTTTAGGATTTGGG
GCTTCCAGATGCGTCATGAAACCGGCGCCTTACTAGTTGTTTTGCTGCTA
TCAAGTGGTAAGCGGCCAGATTTTCCGGACACCCTTGCGAGGTCTTGGGA
GATCTTGAACTTCAAGTAGGCAGAGATAAAATCGGGAACGACCAGAGCTA
CCGAATTATTTCCCTTTGCGCTGCTGTTAGGCCTTGTCTTATCGAAGAAC
GGAAAAAGAAATATTCATCAAGAAAACGAAATTGCTCCGTGGTTGGTGGA
TTGAACGTTTGGCCCATGGTATATAGTTTCATTTTTTTGCACAACACTAT
TCCAGGGCTTTTAAGAAATAAAATGATCTTTGTAGACTCCGAAATGAATA
CTAACATGTCTGTGGATGGAACAGTTGCGAAAACATAGCGACCAAGCAGG
ACCAAGGCCATATTTTGTCGAGCGAAGGCAGTGAGTTGCTGACGTGTGAG
GAAGGAATGTAGCACCGACCATCACAAGAGTGAGAGTTTCATTGCCCTCG
GCACAATAAAAGATGGCTCGGGCCGTAGCTATTGATCAACTGGGTATCTT
GTACTTGCTTTGAATAAAATCCGCTTAGATATGAAGGAGATCAAGTGTAG
ACTTGTGTTTGTCGTGCGCGCTGGGTCAAGCCAGACACGAACAAACAGAC
AAAAACGGGCACTCTGTGTAATTGCAACCTGAAGTAAAATATTGTAGCTC
TTCTAACACAGAACGGACTCGCATCAAACAAGGCTGGCGTGTCCAGCTGA
GCAAGGTCTATCGCCTCTCTGCCTGTTGTTTTAGACTATCTGTGGCTGTG
GTGTTTCTGAAGTCCTTTCCATTTTGCAACGTGGTCACTTCACCACCAGT
AGCGGTCTTGTACAGTACAGACGTCGACATCTGCAGACACAAGTCGTTAA
CTCATTAAGATCCTTATCAAGATATTTGGACGAGGAATATTTCGTTTTTT
CCGTCGCTCGATAAGACATGGCCTCAGTATTACCGTTGTGGGCGTAATAT
GGCGTGCCGTTACTCATGTCCTCAAACGTGCTGGTTGCACTTCACTGAAT
CCGCTAATTTCATCAAACCGTTTTGTACAGCCGACTATGCCTCATCTATC
GTACTTTTATTCGCTACTATCATGTACGATTCGGGGTAGGTATATGCACG
GTCCGATTCCGATGAAGGTCGAGAGGTGTCGCGCAGAGATGCTGAGGGCG
TGTGTCTCCCCGGCGCAGCTGCTGCGGCAAGGATCTTTCAAGTCGACCGT
GGTTGGCCTGAGGGCCTTTGGACGAAGGACGCACGAGGACGAATGGGACG
AGGTGCGCAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2906:14661..18424+

>mRNA_H-paniculata_contig2906.7923.1 ID=mRNA_H-paniculata_contig2906.7923.1|Name=mRNA_H-paniculata_contig2906.7923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig2906:14661..18424+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCCGCCGGTGCCCGTCTCCTCCACGACTATTGCTGTAGCCGGATG
GGTCGCTGCTACTTCGACAGCTATGGTGTTCGCCGTCGTGCTTTCCGCCC
TTCGTGGCGGTGTCGCAGCTGTTCTACTTACCGTGACGTTCTCGGCGCCA
ACAGTGCTTGTTATATTCCTTCTCTGCCTGTGGGGCGCGACGAAGTACTG
CCCTGGCCTGCTGGGCATTGTCGTCCAGGTGCTAGTGGTCGAAGTAATTC
GATTAAGCGGAGCCTTGGCCGATGATGACGAAGAAGAGGAAGACGAGAGC
TGGAGCCGGATGAAAGGAGAAGAGAGAGCAGCTAGGCTGGGAAAGGAATG
GGCAGAAGGACGGCTGTCGGAGTGCCGACACGAGAGATGGCGTAAGCAGC
AGCAAGGGCAGGAGGAGGAGGAGACTCGGCGGCGGCGGCAAGGACGGCGC
CGACGGCGGCGGCGCCGTCGTGTGACTGTGGAATGGGAAGATGGCCAGAT
GTTCGTAACAGTTCATCGACCAATCGCGTCCGAATGGCTGGTCGGCCTCG
TGAATAGATGCCGCCGCCGGTGCCCGTCTCCTCCACGACTATTGCTGTAG
CCGGATGGGTCGCTGCTACTTCGACAGCTATGGTGTTCGCCGTCGTGCTT
TCCGCCCTTCGTGGCGGTGTCGCAGCTGTTCTACTTACCGTGACGTTCTC
GGCGCCAACAGTGCTTGTTATATTCCTTCTCTGCCTGTGGGGCGCGACGA
AGTACTGCCCTGGCCTGCTGGGCATTGTCGTCCAGGTGCTAGTGGTCGAA
GTAATTCGATTAAGCGGAGCCTTGGCCGATGATGACGAAGAAGAGGAAGA
CGAGAGCTGGAGCCGGATGAAAGGAGAAGAGAGAGCAGCTAGGCTGGGAA
AGGAATGGGCAGAAGGACGGCTGTCGGAGTGCCGACACGAGAGATGGCGT
AAGCAGCAGCAAGGGCAGGAGGAGGAGGAGACTCGGCGGCGGCGGCAAGG
ACGGCGCCGACGGCGGCGGCGCCGTCGTGTGACTGTGGAATGGGAAGATG
GCCAGATGTTCGTAACAGTTCATCGACCAATCGCGTCCGAATGGCTGGTC
GGCCTCGTGAATAGGTATATGCACGGTCCGATTCCGATGAAGGTCGAGAG
GTGTCGCGCAGAGATGCTGAGGGCGTGTGTCTCCCCGGCGCAGCTGCTGC
GGCAAGGATCTTTCAAGTCGACCGTGGTTGGCCTGAGGGCCTTTGGACGA
AGGACGCACGAGGACGAATGGGACGAGGTGCGCAAGTAGGTATATGCACG
GTCCGATTCCGATGAAGGTCGAGAGGTGTCGCGCAGAGATGCTGAGGGCG
TGTGTCTCCCCGGCGCAGCTGCTGCGGCAAGGATCTTTCAAGTCGACCGT
GGTTGGCCTGAGGGCCTTTGGACGAAGGACGCACGAGGACGAATGGGACG
AGGTGCGCAAGTAG
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