mRNA_H-paniculata_contig29041.7918.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29041.7918.1
Unique NamemRNA_H-paniculata_contig29041.7918.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29041.7918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29041contigH-paniculata_contig29041:1344..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1220
Cds size786
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929886.5992148-UTR-H-paniculata_contig29041:1343..17771622929886.5992148-UTR-H-paniculata_contig29041:1343..1777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29041 1344..1777 +
1691481055.1964636-UTR-H-paniculata_contig29041:1343..17771691481055.1964636-UTR-H-paniculata_contig29041:1343..1777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig29041 1344..1777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929886.610235-CDS-H-paniculata_contig29041:1777..25631622929886.610235-CDS-H-paniculata_contig29041:1777..2563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29041 1778..2563 +
1691481055.207073-CDS-H-paniculata_contig29041:1777..25631691481055.207073-CDS-H-paniculata_contig29041:1777..2563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29041 1778..2563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29041.7918.1prot_H-paniculata_contig29041.7918.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29041 1778..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29041.7918.1

>prot_H-paniculata_contig29041.7918.1 ID=prot_H-paniculata_contig29041.7918.1|Name=mRNA_H-paniculata_contig29041.7918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
MKSHAPIGSLYYRCYGTPLLTWTGGNPVTIKPRLCCITPVLQQVKLMAYD
GRRLVILCISASRRDTTVEDGCFCASAAFVSASCSRAAWRLSNTLFAHFA
GVWGILLDVFASWSSGGSCRVGESPPGFIHRATDLCQSFASLRSQAALIV
TVSTDVRRQALVARVQVEGDQLRVSHGAVHLAHLQLLQSDPYLWLWLGLR
RCFIADAAAVCVGGVGGAALDEPPSHMDVCGATRLVHCSCVPFVYYEVII
SNSTIVVPCIPS
back to top

mRNA from alignment at H-paniculata_contig29041:1344..2563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29041.7918.1 ID=mRNA_H-paniculata_contig29041.7918.1|Name=mRNA_H-paniculata_contig29041.7918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1220bp|location=Sequence derived from alignment at H-paniculata_contig29041:1344..2563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGAATGCTACTGCAAAGCAAGAGAAATCATAAAAAAGAAAAAGGAACC
AATACAAGAGGAAAATGAAACAAAACAAAATAAAAAAACATACAGTAACA
AGAACAACAACCAACAACACGAACATCGAGACATCTGAATCAAATTGTAC
AAGCACTGGCGGTGCCCTACTACGCCACACCCGATGTATCTCTTTCCCTA
ATCGTCAATGCTGGCTTCTCCCTCGCAATGTCGTAGTCACGGGCTCCCTA
GTCTTATCACTTCAACCGCTTCCCCCGCCCTTGCTGACTGAACCTTGGCA
GTCAGCATCCGCCCCTTTGCTGTACCGCGTACCTTCCGTCCAATCTTTGC
AAAACCTCCCGCACTTCAGGGATGCGCTCAAAGTTCATCTTAAAAAACAT
CATCTTGTCAACACGCTCATGGTGATGGCCAACGATGAAAAGTCACGCTC
CGATTGGCAGCTTGTACTATCGATGCTATGGAACACCCTTGCTAACATGG
ACGGGAGGAAATCCCGTCACTATCAAGCCTCGCCTTTGCTGCATCACTCC
AGTACTGCAGCAAGTGAAATTGATGGCTTATGATGGCAGGCGTCTTGTCA
TACTCTGCATTTCCGCCTCCAGACGCGATACCACAGTTGAAGATGGTTGC
TTCTGCGCCTCGGCAGCCTTCGTGTCTGCTTCCTGCTCTCGTGCAGCCTG
GCGCCTCTCGAATACACTCTTCGCACACTTTGCTGGGGTTTGGGGAATCT
TGCTTGACGTTTTCGCTAGCTGGAGCAGTGGGGGCAGCTGCCGGGTGGGT
GAGTCCCCCCCCGGCTTCATTCATCGTGCAACCGATCTTTGTCAAAGCTT
TGCGAGCCTCCGCTCTCAAGCAGCCCTCATCGTCACTGTTTCCACAGATG
TCAGAAGGCAGGCACTTGTAGCCAGGGTCCAAGTAGAGGGCGATCAACTC
CGCGTTAGCCATGGCGCTGTCCACCTGGCGCATCTGCAGCTTCTCCAAAG
CGACCCCTATCTGTGGCTGTGGCTGGGACTGCGGCGTTGCTTCATCGCTG
ATGCAGCCGCTGTGTGCGTTGGCGGCGTTGGTGGCGCCGCGCTGGACGAA
CCGCCCTCCCACATGGACGTATGTGGCGCCACAAGACTTGTTCACTGTAG
TTGCGTCCCTTTCGTCTACTACGAAGTGATCATTAGTAATAGTACCATTG
TCGTACCGTGCATACCATCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig29041:1344..2563+

>mRNA_H-paniculata_contig29041.7918.1 ID=mRNA_H-paniculata_contig29041.7918.1|Name=mRNA_H-paniculata_contig29041.7918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig29041:1344..2563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGTCACGCTCCGATTGGCAGCTTGTACTATCGATGCTATGGAAC
ACCCTTGCTAACATGGACGGGAGGAAATCCCGTCACTATCAAGCCTCGCC
TTTGCTGCATCACTCCAGTACTGCAGCAAGTGAAATTGATGGCTTATGAT
GGCAGGCGTCTTGTCATACTCTGCATTTCCGCCTCCAGACGCGATACCAC
AGTTGAAGATGGTTGCTTCTGCGCCTCGGCAGCCTTCGTGTCTGCTTCCT
GCTCTCGTGCAGCCTGGCGCCTCTCGAATACACTCTTCGCACACTTTGCT
GGGGTTTGGGGAATCTTGCTTGACGTTTTCGCTAGCTGGAGCAGTGGGGG
CAGCTGCCGGGTGGGTGAGTCCCCCCCCGGCTTCATTCATCGTGCAACCG
ATCTTTGTCAAAGCTTTGCGAGCCTCCGCTCTCAAGCAGCCCTCATCGTC
ACTGTTTCCACAGATGTCAGAAGGCAGGCACTTGTAGCCAGGGTCCAAGT
AGAGGGCGATCAACTCCGCGTTAGCCATGGCGCTGTCCACCTGGCGCATC
TGCAGCTTCTCCAAAGCGACCCCTATCTGTGGCTGTGGCTGGGACTGCGG
CGTTGCTTCATCGCTGATGCAGCCGCTGTGTGCGTTGGCGGCGTTGGTGG
CGCCGCGCTGGACGAACCGCCCTCCCACATGGACGTATGTGGCGCCACAA
GACTTGTTCACTGTAGTTGCGTCCCTTTCGTCTACTACGAAGTGATCATT
AGTAATAGTACCATTGTCGTACCGTGCATACCATCAATGAAAAGTCACGC
TCCGATTGGCAGCTTGTACTATCGATGCTATGGAACACCCTTGCTAACAT
GGACGGGAGGAAATCCCGTCACTATCAAGCCTCGCCTTTGCTGCATCACT
CCAGTACTGCAGCAAGTGAAATTGATGGCTTATGATGGCAGGCGTCTTGT
CATACTCTGCATTTCCGCCTCCAGACGCGATACCACAGTTGAAGATGGTT
GCTTCTGCGCCTCGGCAGCCTTCGTGTCTGCTTCCTGCTCTCGTGCAGCC
TGGCGCCTCTCGAATACACTCTTCGCACACTTTGCTGGGGTTTGGGGAAT
CTTGCTTGACGTTTTCGCTAGCTGGAGCAGTGGGGGCAGCTGCCGGGTGG
GTGAGTCCCCCCCCGGCTTCATTCATCGTGCAACCGATCTTTGTCAAAGC
TTTGCGAGCCTCCGCTCTCAAGCAGCCCTCATCGTCACTGTTTCCACAGA
TGTCAGAAGGCAGGCACTTGTAGCCAGGGTCCAAGTAGAGGGCGATCAAC
TCCGCGTTAGCCATGGCGCTGTCCACCTGGCGCATCTGCAGCTTCTCCAA
AGCGACCCCTATCTGTGGCTGTGGCTGGGACTGCGGCGTTGCTTCATCGC
TGATGCAGCCGCTGTGTGCGTTGGCGGCGTTGGTGGCGCCGCGCTGGACG
AACCGCCCTCCCACATGGACGTATGTGGCGCCACAAGACTTGTTCACTGT
AGTTGCGTCCCTTTCGTCTACTACGAAGTGATCATTAGTAATAGTACCAT
TGTCGTACCGTGCATACCATCA
back to top