prot_H-paniculata_contig2902.7914.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2902.7914.1
Unique Nameprot_H-paniculata_contig2902.7914.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length536
Homology
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 1.480e-106
Identity = 180/283 (63.60%), Postives = 208/283 (73.50%), Query Frame = 0
Query:  254 MDHKVIKKWVENVASRKTKATASQIHRYFKGRVDPDVIDSYLEAFNNNYRDTVIQCAEFLNIFVQPEEEVVASAEPVEDVNDDLVGGAFAAKERNRIGDFDFAEHPLERRANEAYSNDCKDLKLLQAILDEARGQPGLAPTRKMVSKMVKRIKASQEELKKIRQDHKRQDSKKEIPQALHPAYAGNKPAFTSFQPPTIAADKEPDAMVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQNFPAGEMRKLHIHGNKTQVDAAIKEVEFLMNSAPVNNARPGK 536
            MDH VIK WV  VASR+  AT+ +I RYF GRVD DVID Y E F+N+ R TVIQCAEFLNI V PE+E     E  +D+N +LV GAF AKER + GD+   EHPLERRANEA  NDCKDL +L AIL EA G+ GL   +KM+ KM+KRI  ++EE K++R     +  ++   Q LHPAYA  KP F+SF P TI  DK PDAM+DIPPNVVGWVIGK G RIN+IQ +TNAAMWMDQNFP G MRKLHIHGNK QV+AAI EVEFLM SAPVN  RPGK
Sbjct:    1 MDHSVIKNWVLEVASRRVLATSDEIKRYFHGRVDEDVIDFYNEEFSNS-RATVIQCAEFLNIEVPPEDE-----EEEDDINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMIKRINETREEQKQLRTQSLLKPKREVSSQKLHPAYASKKPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIDEVEFLMKSAPVNTPRPGK 276          
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.830e-95
Identity = 177/313 (56.55%), Postives = 207/313 (66.13%), Query Frame = 0
Query:  254 MDHKVIKKWVENVASRKTKATASQIHRYFKGRVDPDVIDSYLEAFNNNYRDTVIQCAEFLNIFVQPEEEVVAS---AEPVED---------------------------VNDDLVGGAFAAKERNRIGDFDFAEHPLERRANEAYSNDCKDLKLLQAILDEARGQPGLAPTRKMVSKMVKRIKASQEELKKIRQDHKRQDSKKEIPQALHPAYAGNKPAFTSFQPPTIAADKEPDAMVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQNFPAGEMRKLHIHGNKTQVDAAIKEVEFLMNSAPVNNARPGK 536
            MDH VIK+WV  VASR+  AT  +I RYF GRVD DVID Y E F+N  R TVIQCAEFLNI V P++++       EP +                            +N +LV GAF AKER + GD+   EHPLERRANEA  NDCKDL +L AIL EA G+ GL   +KM+ KMVKRI  ++EE KK+R     +  ++   Q LHPAYA  +P F+SF P TI  DK PDAM+DIPPNVVGWVIGK G RIN+IQ +TNAAMWMDQNFP G MRKLHIHGNK QV+AAI EVEFLM SAPVN  RP +
Sbjct:  400 MDHSVIKEWVLEVASRRVLATPDEIKRYFHGRVDEDVIDFYNEEFSN-CRATVIQCAEFLNIEVPPDDQISRGDLKREPEDQGARGGGVXXXXXXXXXXXXXXXXXXXXINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKKLRTQSVVKPKREVSAQKLHPAYASKEPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPAR 710          
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: A0A7S4RG89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG89_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-6
Identity = 26/73 (35.62%), Postives = 49/73 (67.12%), Query Frame = 0
Query:  458 DAMVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQN-FPAGEMRKLHIHGNKTQVDAAIKEVEFLMNSAPV 529
            +A++++ P +VGWVIGK G RI ++ + ++A +W+DQ+     + R +++ G K  VD A+K ++ L+  AP+
Sbjct:  217 EAILEMSPQIVGWVIGKGGQRIRDLMEESSAKIWIDQDCMTPAQYRVVYVSGLKNSVDLAVKRMQELVERAPI 289          
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: A0A7S1ZYU7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYU7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.490e-6
Identity = 26/73 (35.62%), Postives = 49/73 (67.12%), Query Frame = 0
Query:  458 DAMVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQN-FPAGEMRKLHIHGNKTQVDAAIKEVEFLMNSAPV 529
            +A++++ P +VGWVIGK G RI ++ + ++A +W+DQ+     + R +++ G K  VD A+K ++ L+  AP+
Sbjct:  400 EAILEMSPQIVGWVIGKGGQRIRDLMEESSAKIWIDQDCMTPAQYRVVYVSGLKNSVDLAVKRMQELVERAPI 472          
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: D8LI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI18_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.880e-6
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0
Query:   31 ICCAKKTTCVGCMKKPSRRRLVDATNQLKRVQQGMVA 67
            ICCAKKT CV C KKPSR RL++AT QLKRVQQG  A
Sbjct:   21 ICCAKKTPCVSCRKKPSRPRLIEATAQLKRVQQGFQA 57          
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Match: A0A061RZW2_9CHLO (Far upstream element-binding protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZW2_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.910e-5
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 0
Query:  447 QPPTIAADKEPDA-----MVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQNFPAGEMRKLHIHGNKTQVDAAIKEVEFLMNSAP 528
            Q PT  A   P A      V+ PP +VG VIG+ G  I  +Q  + A + +DQNFP G  R++HI G    VD  +K V  L+   P
Sbjct:  226 QDPTAGAPGAPSAGEVKQTVNCPPGIVGRVIGRGGETIRALQTSSGAHISIDQNFPEGVDRQVHIQGRPDAVDRGLKMVTELIAGGP 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2902.7914.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LI19_ECTSI1.480e-10663.60Circadian RNA-binding protein CHLAMY 1 subunit C1 ... [more]
A0A6H5KMM6_9PHAE1.830e-9556.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4RG89_9STRA1.190e-635.62Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1ZYU7_9STRA1.490e-635.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8LI18_ECTSI1.880e-675.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A061RZW2_9CHLO2.910e-539.08Far upstream element-binding protein n=2 Tax=Tetra... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 398..425
NoneNo IPR availableCOILSCoilCoilcoord: 112..139
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 456..520
score: 12.873
IPR004087K Homology domainSMARTSM00322kh_6coord: 455..525
e-value: 7.0E-6
score: 35.5
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 461..520
e-value: 5.1E-11
score: 42.2
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 459..524
e-value: 1.3E-12
score: 49.5
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 461..530

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2902contigH-paniculata_contig2902:12921..19421 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2902.7914.1mRNA_H-paniculata_contig2902.7914.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2902 12921..19421 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2902.7914.1 ID=prot_H-paniculata_contig2902.7914.1|Name=mRNA_H-paniculata_contig2902.7914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=536bp
QGCSKCDDEFCSACENFLVKCEYCEKEYCLICCAKKTTCVGCMKKPSRRR
LVDATNQLKRVQQGMVAVGVVGQASGSPPAAAASSQVRYMYPSVRCHDGE
NSTISFLVTAPRQAEVEAKEQAKAKLAAEEQAVAEKIAAQKSAAERAAAA
AAKQEEAYRAAAAAAESDLAVGDAPTNSAAPDRERGTNMMSKKKKKKKKK
GSGANVVATVPTSAPVAPPAAPAQAPAPAPAPEPSYPDQSLIYLTQHGLD
DDCMDHKVIKKWVENVASRKTKATASQIHRYFKGRVDPDVIDSYLEAFNN
NYRDTVIQCAEFLNIFVQPEEEVVASAEPVEDVNDDLVGGAFAAKERNRI
GDFDFAEHPLERRANEAYSNDCKDLKLLQAILDEARGQPGLAPTRKMVSK
MVKRIKASQEELKKIRQDHKRQDSKKEIPQALHPAYAGNKPAFTSFQPPT
IAADKEPDAMVDIPPNVVGWVIGKAGVRINEIQQRTNAAMWMDQNFPAGE
MRKLHIHGNKTQVDAAIKEVEFLMNSAPVNNARPGK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf