mRNA_H-paniculata_contig2902.7912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2902.7912.1
Unique NamemRNA_H-paniculata_contig2902.7912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2902.7912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2902contigH-paniculata_contig2902:310..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size523
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.4670484-UTR-H-paniculata_contig2902:309..5051622929885.4670484-UTR-H-paniculata_contig2902:309..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2902 310..505 +
1691481054.8540506-UTR-H-paniculata_contig2902:309..5051691481054.8540506-UTR-H-paniculata_contig2902:309..505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2902 310..505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929885.482274-CDS-H-paniculata_contig2902:505..8321622929885.482274-CDS-H-paniculata_contig2902:505..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 506..832 +
1691481054.8620806-CDS-H-paniculata_contig2902:505..8321691481054.8620806-CDS-H-paniculata_contig2902:505..832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2902 506..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2902.7912.1prot_H-paniculata_contig2902.7912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2902 506..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2902.7912.1

>prot_H-paniculata_contig2902.7912.1 ID=prot_H-paniculata_contig2902.7912.1|Name=mRNA_H-paniculata_contig2902.7912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MFDPQKNEGGLFPLLSHSCINAIMFCYSSTEQNCSFLYGVGTTFVRPNVV
GNVGVSPTRPLTQLSVTFSSRDHYPRWVEDFSDDLSHDISDVQHVISCIL
VEFSSMLV*
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mRNA from alignment at H-paniculata_contig2902:310..832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2902.7912.1 ID=mRNA_H-paniculata_contig2902.7912.1|Name=mRNA_H-paniculata_contig2902.7912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at H-paniculata_contig2902:310..832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCGCAAATAGTTATAGTGTAGAAAGATGCTATAATCTCTGAAGTAT
GGATTTTCATTTTCCCTCTGTGTCATGCCAAACACTTGTCTCCGATGCTT
CCATAGTCGTATTACTATCGATCTATATCACTTTCCTTGAACAGAATACT
TGGCCAAACCACGTGGGTATGGTGGGGGTGATTTCCCCTCTTCTTTATGT
TTGACCCCCAAAAAAATGAGGGAGGACTTTTTCCGCTTCTTTCACATTCA
TGTATAAACGCCATCATGTTTTGCTATTCTTCAACAGAGCAGAATTGTTC
TTTCCTCTACGGGGTAGGTACCACCTTTGTTCGGCCGAATGTAGTAGGCA
ATGTAGGAGTTTCTCCCACTCGACCTTTGACACAACTTTCCGTCACGTTC
TCTTCGCGAGATCATTATCCGCGCTGGGTGGAAGATTTTAGTGATGATTT
ATCTCACGACATATCAGATGTACAACACGTGATCAGTTGTATTTTAGTTG
AGTTTTCTTCAATGTTAGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2902:310..832+

>mRNA_H-paniculata_contig2902.7912.1 ID=mRNA_H-paniculata_contig2902.7912.1|Name=mRNA_H-paniculata_contig2902.7912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig2902:310..832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGACCCCCAAAAAAATGAGGGAGGACTTTTTCCGCTTCTTTCACA
TTCATGTATAAACGCCATCATGTTTTGCTATTCTTCAACAGAGCAGAATT
GTTCTTTCCTCTACGGGGTAGGTACCACCTTTGTTCGGCCGAATGTAGTA
GGCAATGTAGGAGTTTCTCCCACTCGACCTTTGACACAACTTTCCGTCAC
GTTCTCTTCGCGAGATCATTATCCGCGCTGGGTGGAAGATTTTAGTGATG
ATTTATCTCACGACATATCAGATGTACAACACGTGATCAGTTGTATTTTA
GTTGAGTTTTCTTCAATGTTAGTATAAATGTTTGACCCCCAAAAAAATGA
GGGAGGACTTTTTCCGCTTCTTTCACATTCATGTATAAACGCCATCATGT
TTTGCTATTCTTCAACAGAGCAGAATTGTTCTTTCCTCTACGGGGTAGGT
ACCACCTTTGTTCGGCCGAATGTAGTAGGCAATGTAGGAGTTTCTCCCAC
TCGACCTTTGACACAACTTTCCGTCACGTTCTCTTCGCGAGATCATTATC
CGCGCTGGGTGGAAGATTTTAGTGATGATTTATCTCACGACATATCAGAT
GTACAACACGTGATCAGTTGTATTTTAGTTGAGTTTTCTTCAATGTTAGT
ATAA
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